Wall clock time and date at job start Tue Mar 31 2020 10:57:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31004 * 1
3 3 C 1.50698 * 119.99821 * 2 1
4 4 H 1.08996 * 115.54958 * 25.39950 * 3 2 1
5 5 C 1.53000 * 117.49958 * 171.10331 * 3 2 1
6 6 C 1.52993 * 60.00022 * 107.49186 * 5 3 2
7 7 N 1.46507 * 117.49796 * 107.49105 * 6 5 3
8 8 C 1.38854 * 119.99970 * 105.61466 * 7 6 5
9 9 C 1.39592 * 119.84154 * 329.70076 * 8 7 6
10 10 C 1.36324 * 120.16014 * 179.97438 * 9 8 7
11 11 C 1.40903 * 119.83545 * 359.97438 * 10 9 8
12 12 C 1.41141 * 120.15487 * 180.02562 * 11 10 9
13 13 H 1.07994 * 120.00089 * 152.16759 * 12 11 10
14 14 C 1.39870 * 119.99826 * 332.16747 * 12 11 10
15 15 N 1.30898 * 119.99930 * 345.85648 * 14 12 11
16 16 Si 1.86801 * 119.99716 * 165.85292 * 14 12 11
17 17 H 1.48504 * 109.46961 * 90.00221 * 16 14 12
18 18 H 1.48499 * 109.46979 * 209.99802 * 16 14 12
19 19 H 1.48495 * 109.47188 * 330.00219 * 16 14 12
20 20 C 1.40864 * 119.69052 * 0.02562 * 11 10 9
21 21 C 1.50703 * 120.08422 * 179.97438 * 20 11 10
22 22 C 1.36356 * 119.83650 * 359.73352 * 20 11 10
23 23 C 1.50704 * 117.52073 * 252.51789 * 6 5 3
24 24 O 1.20829 * 119.99528 * 39.98007 * 23 6 5
25 25 O 1.34227 * 119.99934 * 219.97813 * 23 6 5
26 26 C 1.45205 * 116.99756 * 179.97438 * 25 23 6
27 27 C 1.52996 * 109.46943 * 179.97438 * 26 25 23
28 28 H 1.07999 * 120.00310 * 359.97438 * 1 2 3
29 29 H 1.08000 * 119.99485 * 179.97438 * 1 2 3
30 30 H 1.07998 * 119.99934 * 179.72928 * 2 1 3
31 31 H 1.08999 * 117.50186 * 214.98664 * 5 3 2
32 32 H 1.09003 * 117.49806 * 359.97438 * 5 3 2
33 33 H 0.96996 * 119.99660 * 285.61176 * 7 6 5
34 34 H 1.08002 * 119.91676 * 359.96267 * 9 8 7
35 35 H 1.07997 * 120.07971 * 180.02562 * 10 9 8
36 36 H 0.97002 * 120.00065 * 179.97438 * 15 14 12
37 37 H 1.09000 * 109.47144 * 89.99859 * 21 20 11
38 38 H 1.08993 * 109.47186 * 210.00048 * 21 20 11
39 39 H 1.09003 * 109.46974 * 329.99641 * 21 20 11
40 40 H 1.08006 * 119.92332 * 180.25056 * 22 20 11
41 41 H 1.08998 * 109.47465 * 300.00728 * 26 25 23
42 42 H 1.09006 * 109.46664 * 60.00411 * 26 25 23
43 43 H 1.08998 * 109.46870 * 60.00916 * 27 26 25
44 44 H 1.09010 * 109.46856 * 180.02562 * 27 26 25
45 45 H 1.08995 * 109.47311 * 300.00219 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 1 1.5292 2.1564 0.4218
5 6 3.5779 1.2466 0.2099
6 6 3.0093 1.5749 -1.1720
7 7 3.1278 2.9577 -1.6411
8 6 4.0581 3.2815 -2.6198
9 6 5.2468 2.5560 -2.7154
10 6 6.1644 2.8680 -3.6741
11 6 5.9103 3.9254 -4.5700
12 6 6.8554 4.2538 -5.5655
13 1 6.5302 4.7062 -6.4906
14 6 8.2132 3.9933 -5.3538
15 7 8.6454 3.7093 -4.1513
16 14 9.4097 4.0507 -6.7871
17 1 9.9503 5.4269 -6.9259
18 1 10.5258 3.1032 -6.5384
19 1 8.7043 3.6677 -8.0364
20 6 4.7086 4.6532 -4.4675
21 6 4.4280 5.7862 -5.4207
22 6 3.7976 4.3268 -3.5068
23 6 3.1156 0.5154 -2.2384
24 8 2.9273 -0.6448 -1.9583
25 8 3.4196 0.8606 -3.4994
26 6 3.5057 -0.2123 -4.4740
27 6 3.8583 0.3703 -5.8441
28 1 -0.5400 0.9353 0.0004
29 1 -0.5399 -0.9354 -0.0004
30 1 1.8500 -0.9353 0.0044
31 1 4.0402 2.0593 0.7701
32 1 4.0292 0.2641 0.3484
33 1 2.5563 3.6470 -1.2681
34 1 5.4400 1.7456 -2.0281
35 1 7.0834 2.3055 -3.7472
36 1 9.5871 3.5283 -4.0045
37 1 3.9073 5.4025 -6.2980
38 1 3.8055 6.5316 -4.9259
39 1 5.3684 6.2441 -5.7277
40 1 2.8740 4.8813 -3.4296
41 1 4.2779 -0.9188 -4.1695
42 1 2.5463 -0.7263 -4.5342
43 1 4.8175 0.8845 -5.7842
44 1 3.9225 -0.4351 -6.5758
45 1 3.0858 1.0765 -6.1484
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001170921461.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:57:10
Heat of formation + Delta-G solvation = -12.803469 kcal
Electronic energy + Delta-G solvation = -27119.632939 eV
Core-core repulsion = 23489.469498 eV
Total energy + Delta-G solvation = -3630.163442 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-40.55867 -38.23331 -37.63710 -35.94237 -34.32535 -33.03040 -31.79342 -31.23308
-30.66164 -28.37259 -26.15562 -24.85568 -24.17728 -22.90924 -22.24876 -21.00567
-20.38494 -19.65906 -19.16992 -17.28304 -17.10655 -16.35379 -16.00843 -15.77695
-15.23174 -14.91341 -14.30485 -13.98676 -13.74772 -13.66065 -13.47420 -12.83410
-12.57303 -12.54554 -12.38697 -12.24546 -11.77127 -11.71215 -11.56933 -11.39474
-11.31147 -11.17870 -11.10808 -11.04228 -10.92709 -10.84190 -10.62040 -10.43922
-10.19271 -10.02175 -9.55928 -9.29623 -9.07910 -9.06558 -8.36846 -7.26161
-6.65493 -6.42719 -4.10078 1.98759 2.53308 2.86241 2.94025 3.12907
3.16511 3.18818 3.32552 3.91705 4.03048 4.06332 4.64566 4.75263
4.82493 4.96630 5.09712 5.23493 5.28645 5.36583 5.53891 5.58736
5.76149 5.80850 5.82645 6.01922 6.13208 6.20397 6.27801 6.30736
6.46782 6.50049 6.63224 6.72445 6.73996 6.75688 6.87395 6.97317
7.02927 7.22452 7.38202 7.58625 7.76218 7.84339 8.09939 8.16851
8.31133 8.46514 8.64312 8.78126 9.04972 9.15404 10.36076
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.017975 B = 0.004115 C = 0.003941
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1557.327050 B = 6802.465497 C = 7103.319514
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.109 4.109
3 C -0.103 4.103
4 H 0.120 0.880
5 C -0.159 4.159
6 C 0.137 3.863
7 N -0.722 5.722
8 C 0.086 3.914
9 C -0.122 4.122
10 C -0.129 4.129
11 C 0.095 3.905
12 C -0.461 4.461
13 H 0.074 0.926
14 C 0.075 3.925
15 N -0.807 5.807
16 Si 0.900 3.100
17 H -0.272 1.272
18 H -0.279 1.279
19 H -0.263 1.263
20 C -0.168 4.168
21 C -0.084 4.084
22 C -0.131 4.131
23 C 0.499 3.501
24 O -0.520 6.520
25 O -0.310 6.310
26 C 0.062 3.938
27 C -0.151 4.151
28 H 0.093 0.907
29 H 0.098 0.902
30 H 0.123 0.877
31 H 0.112 0.888
32 H 0.105 0.895
33 H 0.392 0.608
34 H 0.076 0.924
35 H 0.114 0.886
36 H 0.276 0.724
37 H 0.040 0.960
38 H 0.035 0.965
39 H 0.061 0.939
40 H 0.085 0.915
41 H 0.063 0.937
42 H 0.059 0.941
43 H 0.079 0.921
44 H 0.070 0.930
45 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.666 -4.893 4.211 11.623
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C -0.127 4.127
3 C -0.123 4.123
4 H 0.138 0.862
5 C -0.199 4.199
6 C 0.044 3.956
7 N -0.359 5.359
8 C -0.009 4.009
9 C -0.144 4.144
10 C -0.149 4.149
11 C 0.092 3.908
12 C -0.492 4.492
13 H 0.092 0.908
14 C -0.140 4.140
15 N -0.434 5.434
16 Si 0.725 3.275
17 H -0.198 1.198
18 H -0.204 1.204
19 H -0.187 1.187
20 C -0.170 4.170
21 C -0.141 4.141
22 C -0.153 4.153
23 C 0.342 3.658
24 O -0.410 6.410
25 O -0.225 6.225
26 C -0.012 4.012
27 C -0.208 4.208
28 H 0.112 0.888
29 H 0.117 0.883
30 H 0.141 0.859
31 H 0.131 0.869
32 H 0.123 0.877
33 H 0.226 0.774
34 H 0.094 0.906
35 H 0.132 0.868
36 H 0.086 0.914
37 H 0.058 0.942
38 H 0.054 0.946
39 H 0.080 0.920
40 H 0.103 0.897
41 H 0.082 0.918
42 H 0.077 0.923
43 H 0.098 0.902
44 H 0.089 0.911
45 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -9.403 -5.424 4.286 11.670
hybrid contribution 0.456 0.077 -0.430 0.631
sum -8.946 -5.347 3.856 11.113
Atomic orbital electron populations
1.23713 0.95756 1.01639 1.02332 1.22429 0.95419 0.96615 0.98282
1.21759 0.92811 0.98368 0.99333 0.86231 1.23745 0.94484 1.04166
0.97499 1.19787 1.05717 0.84172 0.85917 1.43015 1.43620 1.03194
1.46066 1.17004 0.89799 1.00891 0.93221 1.20043 0.93337 1.00522
1.00456 1.20814 0.98553 0.98264 0.97304 1.17340 0.90923 0.89973
0.92567 1.19385 0.90809 1.36459 1.02576 0.90757 1.25796 0.99348
0.93009 0.95895 1.69842 1.16350 1.36156 1.21033 0.86451 0.79872
0.78687 0.82469 1.19779 1.20407 1.18712 1.19278 0.97929 0.99992
0.99826 1.20400 1.00516 0.95972 0.97201 1.19780 0.98323 1.00485
0.96662 1.22614 0.72089 0.87981 0.83160 1.90591 1.47730 1.20306
1.82395 1.86934 1.78984 1.38846 1.17692 1.22983 1.00953 0.88923
0.88342 1.21755 1.04304 1.01574 0.93140 0.88822 0.88330 0.85896
0.86936 0.87707 0.77365 0.90569 0.86793 0.91354 0.94155 0.94618
0.92048 0.89727 0.91821 0.92307 0.90198 0.91114 0.91708
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -2.19 14.35 29.01 0.42 -1.77 16
2 C -0.11 -1.39 7.79 -36.03 -0.28 -1.67 16
3 C -0.10 -1.32 5.88 -91.77 -0.54 -1.86 16
4 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16
5 C -0.16 -2.16 9.74 -26.73 -0.26 -2.42 16
6 C 0.14 2.18 2.18 -132.97 -0.29 1.89 16
7 N -0.72 -12.32 5.63 -46.93 -0.26 -12.59 16
8 C 0.09 1.79 5.11 -83.69 -0.43 1.36 16
9 C -0.12 -2.78 7.23 -39.77 -0.29 -3.07 16
10 C -0.13 -3.25 8.61 -39.26 -0.34 -3.59 16
11 C 0.09 2.41 5.55 -106.79 -0.59 1.82 16
12 C -0.46 -11.86 8.06 -37.87 -0.31 -12.16 16
13 H 0.07 1.85 6.94 -52.49 -0.36 1.48 16
14 C 0.07 1.86 5.19 -17.34 -0.09 1.77 16
15 N -0.81 -20.83 10.96 55.54 0.61 -20.22 16
16 Si 0.90 18.72 29.58 -169.99 -5.03 13.70 16
17 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16
18 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16
19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16
20 C -0.17 -3.92 5.90 -104.31 -0.62 -4.53 16
21 C -0.08 -1.71 9.40 36.01 0.34 -1.37 16
22 C -0.13 -2.83 9.53 -39.77 -0.38 -3.21 16
23 C 0.50 8.99 6.60 36.01 0.24 9.23 16
24 O -0.52 -9.51 13.86 -18.75 -0.26 -9.77 16
25 O -0.31 -5.89 6.73 -39.25 -0.26 -6.15 16
26 C 0.06 1.00 6.19 37.16 0.23 1.23 16
27 C -0.15 -2.28 10.29 37.16 0.38 -1.90 16
28 H 0.09 0.94 8.05 -52.49 -0.42 0.52 16
29 H 0.10 0.97 8.06 -52.49 -0.42 0.55 16
30 H 0.12 1.68 7.05 -52.49 -0.37 1.31 16
31 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16
32 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16
33 H 0.39 5.80 8.87 -40.82 -0.36 5.44 16
34 H 0.08 1.70 7.00 -52.49 -0.37 1.33 16
35 H 0.11 3.03 6.27 -52.49 -0.33 2.70 16
36 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16
37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16
38 H 0.03 0.64 8.08 -51.93 -0.42 0.22 16
39 H 0.06 1.29 6.81 -51.93 -0.35 0.93 16
40 H 0.08 1.65 8.06 -52.48 -0.42 1.22 16
41 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16
42 H 0.06 0.87 8.13 -51.93 -0.42 0.44 16
43 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16
44 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16
45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16
LS Contribution 372.39 15.07 5.61 5.61
Total: -1.00 -27.91 372.39 -9.17 -37.08
By element:
Atomic # 1 Polarization: 19.39 SS G_CDS: -6.77 Total: 12.61 kcal
Atomic # 6 Polarization: -17.47 SS G_CDS: -2.80 Total: -20.27 kcal
Atomic # 7 Polarization: -33.15 SS G_CDS: 0.34 Total: -32.81 kcal
Atomic # 8 Polarization: -15.39 SS G_CDS: -0.52 Total: -15.92 kcal
Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.70 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -27.91 -9.17 -37.08 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001170921461.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.276 kcal
(2) G-P(sol) polarization free energy of solvation -27.910 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.633 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.080 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.803 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds