Wall clock time and date at job start Tue Mar 31 2020 10:57:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31004 * 1
3 3 C 1.50698 * 119.99821 * 2 1
4 4 H 1.08996 * 115.54958 * 25.39950 * 3 2 1
5 5 C 1.53000 * 117.49958 * 171.10331 * 3 2 1
6 6 C 1.52993 * 60.00022 * 107.49186 * 5 3 2
7 7 N 1.46507 * 117.49796 * 107.49105 * 6 5 3
8 8 C 1.38854 * 119.99970 * 105.61466 * 7 6 5
9 9 C 1.39592 * 119.84154 * 329.70076 * 8 7 6
10 10 C 1.36324 * 120.16014 * 179.97438 * 9 8 7
11 11 C 1.40903 * 119.83545 * 359.97438 * 10 9 8
12 12 C 1.41141 * 120.15487 * 180.02562 * 11 10 9
13 13 H 1.07994 * 120.00089 * 152.16759 * 12 11 10
14 14 C 1.39870 * 119.99826 * 332.16747 * 12 11 10
15 15 N 1.30898 * 119.99930 * 345.85648 * 14 12 11
16 16 Si 1.86801 * 119.99716 * 165.85292 * 14 12 11
17 17 H 1.48504 * 109.46961 * 90.00221 * 16 14 12
18 18 H 1.48499 * 109.46979 * 209.99802 * 16 14 12
19 19 H 1.48495 * 109.47188 * 330.00219 * 16 14 12
20 20 C 1.40864 * 119.69052 * 0.02562 * 11 10 9
21 21 C 1.50703 * 120.08422 * 179.97438 * 20 11 10
22 22 C 1.36356 * 119.83650 * 359.73352 * 20 11 10
23 23 C 1.50704 * 117.52073 * 252.51789 * 6 5 3
24 24 O 1.20829 * 119.99528 * 39.98007 * 23 6 5
25 25 O 1.34227 * 119.99934 * 219.97813 * 23 6 5
26 26 C 1.45205 * 116.99756 * 179.97438 * 25 23 6
27 27 C 1.52996 * 109.46943 * 179.97438 * 26 25 23
28 28 H 1.07999 * 120.00310 * 359.97438 * 1 2 3
29 29 H 1.08000 * 119.99485 * 179.97438 * 1 2 3
30 30 H 1.07998 * 119.99934 * 179.72928 * 2 1 3
31 31 H 1.08999 * 117.50186 * 214.98664 * 5 3 2
32 32 H 1.09003 * 117.49806 * 359.97438 * 5 3 2
33 33 H 0.96996 * 119.99660 * 285.61176 * 7 6 5
34 34 H 1.08002 * 119.91676 * 359.96267 * 9 8 7
35 35 H 1.07997 * 120.07971 * 180.02562 * 10 9 8
36 36 H 0.97002 * 120.00065 * 179.97438 * 15 14 12
37 37 H 1.09000 * 109.47144 * 89.99859 * 21 20 11
38 38 H 1.08993 * 109.47186 * 210.00048 * 21 20 11
39 39 H 1.09003 * 109.46974 * 329.99641 * 21 20 11
40 40 H 1.08006 * 119.92332 * 180.25056 * 22 20 11
41 41 H 1.08998 * 109.47465 * 300.00728 * 26 25 23
42 42 H 1.09006 * 109.46664 * 60.00411 * 26 25 23
43 43 H 1.08998 * 109.46870 * 60.00916 * 27 26 25
44 44 H 1.09010 * 109.46856 * 180.02562 * 27 26 25
45 45 H 1.08995 * 109.47311 * 300.00219 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 1 1.5292 2.1564 0.4218
5 6 3.5779 1.2466 0.2099
6 6 3.0093 1.5749 -1.1720
7 7 3.1278 2.9577 -1.6411
8 6 4.0581 3.2815 -2.6198
9 6 5.2468 2.5560 -2.7154
10 6 6.1644 2.8680 -3.6741
11 6 5.9103 3.9254 -4.5700
12 6 6.8554 4.2538 -5.5655
13 1 6.5302 4.7062 -6.4906
14 6 8.2132 3.9933 -5.3538
15 7 8.6454 3.7093 -4.1513
16 14 9.4097 4.0507 -6.7871
17 1 9.9503 5.4269 -6.9259
18 1 10.5258 3.1032 -6.5384
19 1 8.7043 3.6677 -8.0364
20 6 4.7086 4.6532 -4.4675
21 6 4.4280 5.7862 -5.4207
22 6 3.7976 4.3268 -3.5068
23 6 3.1156 0.5154 -2.2384
24 8 2.9273 -0.6448 -1.9583
25 8 3.4196 0.8606 -3.4994
26 6 3.5057 -0.2123 -4.4740
27 6 3.8583 0.3703 -5.8441
28 1 -0.5400 0.9353 0.0004
29 1 -0.5399 -0.9354 -0.0004
30 1 1.8500 -0.9353 0.0044
31 1 4.0402 2.0593 0.7701
32 1 4.0292 0.2641 0.3484
33 1 2.5563 3.6470 -1.2681
34 1 5.4400 1.7456 -2.0281
35 1 7.0834 2.3055 -3.7472
36 1 9.5871 3.5283 -4.0045
37 1 3.9073 5.4025 -6.2980
38 1 3.8055 6.5316 -4.9259
39 1 5.3684 6.2441 -5.7277
40 1 2.8740 4.8813 -3.4296
41 1 4.2779 -0.9188 -4.1695
42 1 2.5463 -0.7263 -4.5342
43 1 4.8175 0.8845 -5.7842
44 1 3.9225 -0.4351 -6.5758
45 1 3.0858 1.0765 -6.1484
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001170921461.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:57:09
Heat of formation + Delta-G solvation = -25.582821 kcal
Electronic energy + Delta-G solvation = -27120.187094 eV
Core-core repulsion = 23489.469498 eV
Total energy + Delta-G solvation = -3630.717596 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-41.88777 -39.77974 -39.06239 -37.36021 -35.86477 -34.58403 -33.10380 -32.52840
-32.32790 -30.07462 -27.82692 -26.20221 -25.94513 -23.92532 -23.54332 -22.70734
-21.89199 -20.77318 -20.66432 -18.95988 -18.67810 -17.76539 -17.36061 -17.20105
-16.77649 -16.39288 -15.61552 -15.37358 -15.30120 -15.08523 -14.72975 -14.33177
-14.24144 -14.08798 -13.60035 -13.50411 -13.34038 -13.29951 -13.07107 -12.87720
-12.79837 -12.72144 -12.63858 -12.39099 -12.27941 -12.22628 -11.97059 -11.84182
-11.56577 -11.42230 -11.33175 -11.08447 -10.89375 -10.11279 -9.92255 -9.05400
-8.47791 -8.12804 -5.98445 0.84832 1.16090 1.27165 1.37936 1.41959
1.52976 1.59900 1.79076 2.29524 2.60335 2.87123 2.99494 3.52825
3.66596 3.78017 3.93877 4.00390 4.07466 4.09838 4.23537 4.31330
4.52590 4.57303 4.58880 4.76006 4.81863 4.83740 4.87450 4.91649
5.03479 5.12201 5.15450 5.20930 5.26370 5.37811 5.38994 5.52410
5.60190 5.74920 5.79327 5.81279 5.98353 6.08953 6.30968 6.49278
6.65150 6.80478 6.94867 7.16493 7.18649 7.37721 8.54484
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.017975 B = 0.004115 C = 0.003941
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1557.327050 B = 6802.465497 C = 7103.319514
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.139 4.139
3 C -0.070 4.070
4 H 0.149 0.851
5 C -0.154 4.154
6 C 0.105 3.895
7 N -0.713 5.713
8 C 0.113 3.887
9 C -0.129 4.129
10 C -0.144 4.144
11 C 0.059 3.941
12 C -0.490 4.490
13 H 0.072 0.928
14 C 0.033 3.967
15 N -0.844 5.844
16 Si 0.967 3.033
17 H -0.266 1.266
18 H -0.275 1.275
19 H -0.260 1.260
20 C -0.175 4.175
21 C -0.080 4.080
22 C -0.142 4.142
23 C 0.490 3.510
24 O -0.530 6.530
25 O -0.334 6.334
26 C 0.058 3.942
27 C -0.141 4.141
28 H 0.111 0.889
29 H 0.110 0.890
30 H 0.107 0.893
31 H 0.124 0.876
32 H 0.101 0.899
33 H 0.407 0.593
34 H 0.074 0.926
35 H 0.087 0.913
36 H 0.278 0.722
37 H 0.052 0.948
38 H 0.060 0.940
39 H 0.048 0.952
40 H 0.113 0.887
41 H 0.060 0.940
42 H 0.075 0.925
43 H 0.045 0.955
44 H 0.103 0.897
45 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.083 -4.529 4.816 13.773
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.157 4.157
3 C -0.089 4.089
4 H 0.166 0.834
5 C -0.194 4.194
6 C 0.013 3.987
7 N -0.351 5.351
8 C 0.016 3.984
9 C -0.151 4.151
10 C -0.164 4.164
11 C 0.057 3.943
12 C -0.521 4.521
13 H 0.091 0.909
14 C -0.179 4.179
15 N -0.473 5.473
16 Si 0.789 3.211
17 H -0.192 1.192
18 H -0.200 1.200
19 H -0.184 1.184
20 C -0.177 4.177
21 C -0.136 4.136
22 C -0.163 4.163
23 C 0.334 3.666
24 O -0.421 6.421
25 O -0.249 6.249
26 C -0.016 4.016
27 C -0.198 4.198
28 H 0.129 0.871
29 H 0.129 0.871
30 H 0.125 0.875
31 H 0.143 0.857
32 H 0.119 0.881
33 H 0.244 0.756
34 H 0.092 0.908
35 H 0.105 0.895
36 H 0.088 0.912
37 H 0.070 0.930
38 H 0.079 0.921
39 H 0.067 0.933
40 H 0.131 0.869
41 H 0.078 0.922
42 H 0.094 0.906
43 H 0.064 0.936
44 H 0.121 0.879
45 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -11.857 -5.063 4.917 13.798
hybrid contribution 0.983 -0.142 -0.488 1.107
sum -10.873 -5.205 4.429 12.843
Atomic orbital electron populations
1.23985 0.95167 1.03087 0.98929 1.22375 0.96109 0.96045 1.01160
1.21886 0.92249 0.99249 0.95482 0.83362 1.23806 0.95924 1.04373
0.95289 1.19995 1.09679 0.82836 0.86201 1.42884 1.42734 1.04395
1.45109 1.17021 0.89336 0.99160 0.92879 1.19983 0.93915 1.01053
1.00141 1.20660 0.98336 0.98732 0.98718 1.17601 0.92358 0.90935
0.93417 1.19565 0.91731 1.37928 1.02868 0.90948 1.26533 1.00715
0.92471 0.98161 1.69928 1.16738 1.37803 1.22819 0.85430 0.77593
0.78793 0.79236 1.19150 1.20004 1.18355 1.19701 0.97264 1.00207
1.00480 1.20380 1.00471 0.95518 0.97256 1.20063 0.99096 1.00937
0.96240 1.23048 0.71774 0.88549 0.83221 1.90575 1.48283 1.20737
1.82461 1.86900 1.79205 1.40203 1.18583 1.23137 1.01714 0.88572
0.88133 1.21712 1.02162 1.02325 0.93646 0.87120 0.87146 0.87454
0.85748 0.88098 0.75617 0.90806 0.89488 0.91174 0.92975 0.92086
0.93342 0.86900 0.92162 0.90648 0.93576 0.87866 0.91909
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.26 14.35 67.78 0.97 -2.28 16
2 C -0.14 -3.18 7.79 25.64 0.20 -2.98 16
3 C -0.07 -1.57 5.88 -11.54 -0.07 -1.64 16
4 H 0.15 2.49 8.14 -2.39 -0.02 2.47 16
5 C -0.15 -3.92 9.74 30.59 0.30 -3.62 16
6 C 0.10 3.15 2.18 2.85 0.01 3.16 16
7 N -0.71 -22.80 5.63 -302.38 -1.70 -24.50 16
8 C 0.11 4.61 5.11 38.67 0.20 4.81 16
9 C -0.13 -6.03 7.23 22.15 0.16 -5.87 16
10 C -0.14 -7.62 8.61 22.48 0.19 -7.42 16
11 C 0.06 3.14 5.55 -21.27 -0.12 3.02 16
12 C -0.49 -26.15 8.06 23.38 0.19 -25.96 16
13 H 0.07 3.73 6.94 -2.91 -0.02 3.71 16
14 C 0.03 1.68 5.19 85.23 0.44 2.12 16
15 N -0.84 -45.69 10.96 21.82 0.24 -45.45 16
16 Si 0.97 39.57 29.58 68.60 2.03 41.60 16
17 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16
18 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16
19 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16
20 C -0.17 -8.12 5.90 -19.66 -0.12 -8.24 16
21 C -0.08 -3.16 9.40 71.24 0.67 -2.49 16
22 C -0.14 -5.92 9.53 22.15 0.21 -5.71 16
23 C 0.49 17.40 6.60 71.24 0.47 17.87 16
24 O -0.53 -19.15 13.86 21.95 0.30 -18.85 16
25 O -0.33 -12.70 6.73 -51.39 -0.35 -13.05 16
26 C 0.06 1.87 6.19 71.98 0.45 2.32 16
27 C -0.14 -4.32 10.29 71.98 0.74 -3.58 16
28 H 0.11 1.70 8.05 -2.91 -0.02 1.68 16
29 H 0.11 1.79 8.06 -2.91 -0.02 1.77 16
30 H 0.11 2.81 7.05 -2.91 -0.02 2.79 16
31 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16
32 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16
33 H 0.41 10.65 8.87 -92.71 -0.82 9.83 16
34 H 0.07 3.39 7.00 -2.91 -0.02 3.37 16
35 H 0.09 4.98 6.27 -2.91 -0.02 4.96 16
36 H 0.28 13.90 8.30 -92.71 -0.77 13.13 16
37 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16
38 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16
39 H 0.05 2.03 6.81 -2.39 -0.02 2.01 16
40 H 0.11 4.04 8.06 -2.91 -0.02 4.01 16
41 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16
42 H 0.08 2.16 8.13 -2.38 -0.02 2.14 16
43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16
44 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16
45 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16
Total: -1.00 -62.85 372.39 5.59 -57.26
By element:
Atomic # 1 Polarization: 39.33 SS G_CDS: 0.17 Total: 39.50 kcal
Atomic # 6 Polarization: -41.40 SS G_CDS: 4.89 Total: -36.51 kcal
Atomic # 7 Polarization: -68.49 SS G_CDS: -1.46 Total: -69.95 kcal
Atomic # 8 Polarization: -31.86 SS G_CDS: -0.04 Total: -31.90 kcal
Atomic # 14 Polarization: 39.57 SS G_CDS: 2.03 Total: 41.60 kcal
Total: -62.85 5.59 -57.26 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001170921461.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.679 kcal
(2) G-P(sol) polarization free energy of solvation -62.847 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.168 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.261 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.583 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds