Wall clock time and date at job start Tue Mar 31 2020 10:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 119.99943 * 2 1 4 4 H 1.08998 * 115.56545 * 334.30514 * 3 2 1 5 5 C 1.53001 * 117.49638 * 188.62057 * 3 2 1 6 6 C 1.53001 * 117.49835 * 119.99818 * 3 2 1 7 7 N 1.46499 * 117.51699 * 214.97196 * 6 3 2 8 8 C 1.38847 * 120.00408 * 78.34156 * 7 6 3 9 9 C 1.39594 * 119.84104 * 352.36673 * 8 7 6 10 10 C 1.36324 * 120.15950 * 179.72020 * 9 8 7 11 11 C 1.40895 * 119.83484 * 0.55156 * 10 9 8 12 12 C 1.41137 * 120.15329 * 179.69980 * 11 10 9 13 13 H 1.08006 * 119.99891 * 209.84330 * 12 11 10 14 14 C 1.39865 * 120.00007 * 29.84245 * 12 11 10 15 15 N 1.30900 * 120.00075 * 29.64328 * 14 12 11 16 16 Si 1.86806 * 119.99922 * 209.63904 * 14 12 11 17 17 H 1.48501 * 109.47102 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46831 * 119.99902 * 16 14 12 19 19 H 1.48499 * 109.47120 * 240.00210 * 16 14 12 20 20 C 1.40872 * 119.69209 * 359.72480 * 11 10 9 21 21 C 1.36354 * 119.83570 * 359.97438 * 20 11 10 22 22 C 1.50699 * 119.91931 * 179.97438 * 21 20 11 23 23 C 1.50705 * 117.49760 * 359.97438 * 6 3 2 24 24 O 1.20822 * 120.00086 * 40.96465 * 23 6 3 25 25 O 1.34234 * 119.99625 * 220.96779 * 23 6 3 26 26 C 1.45202 * 116.99639 * 179.97438 * 25 23 6 27 27 C 1.52997 * 109.46670 * 179.97438 * 26 25 23 28 28 H 1.07999 * 119.99826 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99892 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99765 * 179.97438 * 2 1 3 31 31 H 1.08998 * 117.49845 * 145.02471 * 5 3 2 32 32 H 1.08994 * 117.52123 * 359.97438 * 5 3 2 33 33 H 0.97003 * 119.99480 * 258.34159 * 7 6 3 34 34 H 1.08003 * 119.91826 * 359.97438 * 9 8 7 35 35 H 1.08002 * 120.07757 * 180.25064 * 10 9 8 36 36 H 0.97002 * 119.99828 * 179.97438 * 15 14 12 37 37 H 1.08001 * 120.08038 * 180.02562 * 20 11 10 38 38 H 1.09001 * 109.46890 * 270.02578 * 22 21 20 39 39 H 1.08994 * 109.47353 * 30.02608 * 22 21 20 40 40 H 1.09002 * 109.47075 * 150.02987 * 22 21 20 41 41 H 1.08995 * 109.46967 * 60.00182 * 26 25 23 42 42 H 1.09005 * 109.47095 * 300.00102 * 26 25 23 43 43 H 1.08995 * 109.47253 * 60.00387 * 27 26 25 44 44 H 1.09010 * 109.47085 * 180.02562 * 27 26 25 45 45 H 1.08998 * 109.47454 * 300.00278 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.5313 2.1555 -0.4263 5 6 3.5788 1.2459 -0.2034 6 6 3.0043 1.5776 1.1754 7 7 3.1213 2.9614 1.6419 8 6 2.1303 3.5094 2.4452 9 6 0.9510 2.7989 2.6756 10 6 -0.0239 3.3283 3.4679 11 6 0.1561 4.6009 4.0453 12 6 -0.8515 5.1581 4.8614 13 1 -0.9747 6.2300 4.9114 14 6 -1.6905 4.3223 5.6055 15 7 -1.2524 3.1634 6.0280 16 14 -3.4363 4.8599 5.9965 17 1 -3.6847 6.2008 5.4087 18 1 -4.3955 3.8827 5.4220 19 1 -3.6166 4.9234 7.4692 20 6 1.3463 5.3147 3.8037 21 6 2.3156 4.7701 3.0141 22 6 3.5893 5.5323 2.7539 23 6 3.1061 0.5206 2.2447 24 8 3.1414 -0.6475 1.9381 25 8 3.1576 0.8770 3.5379 26 6 3.2546 -0.1941 4.5134 27 6 3.3022 0.4018 5.9218 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 4.0434 2.0574 -0.7635 32 1 4.0310 0.2633 -0.3369 33 1 3.8913 3.4948 1.3896 34 1 0.8124 1.8256 2.2285 35 1 -0.9341 2.7757 3.6485 36 1 -1.8342 2.5839 6.5444 37 1 1.4911 6.2904 4.2434 38 1 3.4672 6.1512 1.8650 39 1 3.8142 6.1674 3.6107 40 1 4.4078 4.8295 2.5978 41 1 4.1622 -0.7697 4.3319 42 1 2.3862 -0.8469 4.4238 43 1 2.3948 0.9776 6.1036 44 1 3.3755 -0.4023 6.6542 45 1 4.1707 1.0543 6.0111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170924146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:18 Heat of formation + Delta-G solvation = -17.043835 kcal Electronic energy + Delta-G solvation = -27173.683145 eV Core-core repulsion = 23543.335827 eV Total energy + Delta-G solvation = -3630.347318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.57861 -38.48433 -37.49512 -35.95092 -34.30389 -32.99817 -31.54029 -31.38114 -31.11064 -28.53261 -25.83881 -25.19158 -24.23489 -22.84045 -22.38415 -21.04916 -20.02812 -19.73995 -19.47803 -17.34557 -16.82529 -16.36719 -16.22278 -15.92809 -15.50257 -14.94019 -14.20345 -13.91985 -13.83676 -13.51464 -13.34050 -12.96362 -12.70322 -12.56047 -12.48300 -12.19354 -11.95559 -11.86361 -11.65792 -11.54536 -11.42197 -11.28082 -11.18189 -11.07957 -10.92875 -10.68143 -10.52410 -10.40683 -10.18381 -10.12334 -9.70078 -9.47036 -9.26570 -8.90860 -8.47545 -7.33864 -6.76314 -6.38250 -4.02171 2.08118 2.55701 2.83880 2.96526 3.07337 3.16544 3.22033 3.35001 3.80007 4.05648 4.06874 4.64581 4.71555 4.83086 4.92176 5.19570 5.23498 5.27479 5.37714 5.49416 5.58540 5.63827 5.71315 5.90877 5.92801 5.93725 6.04866 6.09282 6.21838 6.30410 6.32977 6.39914 6.55034 6.74455 6.80156 6.83609 6.89830 6.94505 7.22049 7.34913 7.47742 7.66226 7.79266 8.07419 8.16725 8.26327 8.43678 8.61650 8.76965 9.04805 9.15038 10.31866 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.012008 B = 0.004726 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.238262 B = 5923.431261 C = 6050.820214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.128 4.128 3 C -0.094 4.094 4 H 0.125 0.875 5 C -0.138 4.138 6 C 0.122 3.878 7 N -0.714 5.714 8 C 0.094 3.906 9 C -0.135 4.135 10 C -0.137 4.137 11 C 0.092 3.908 12 C -0.482 4.482 13 H 0.075 0.925 14 C 0.089 3.911 15 N -0.790 5.790 16 Si 0.887 3.113 17 H -0.261 1.261 18 H -0.274 1.274 19 H -0.278 1.278 20 C -0.186 4.186 21 C -0.118 4.118 22 C -0.097 4.097 23 C 0.494 3.506 24 O -0.522 6.522 25 O -0.322 6.322 26 C 0.064 3.936 27 C -0.152 4.152 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.393 0.607 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.276 0.724 37 H 0.092 0.908 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.883 -5.108 -7.489 12.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.147 4.147 3 C -0.114 4.114 4 H 0.143 0.857 5 C -0.176 4.176 6 C 0.029 3.971 7 N -0.350 5.350 8 C -0.001 4.001 9 C -0.157 4.157 10 C -0.157 4.157 11 C 0.090 3.910 12 C -0.512 4.512 13 H 0.093 0.907 14 C -0.129 4.129 15 N -0.415 5.415 16 Si 0.711 3.289 17 H -0.185 1.185 18 H -0.199 1.199 19 H -0.204 1.204 20 C -0.206 4.206 21 C -0.122 4.122 22 C -0.154 4.154 23 C 0.336 3.664 24 O -0.412 6.412 25 O -0.237 6.237 26 C -0.010 4.010 27 C -0.209 4.209 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.137 0.863 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.229 0.771 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.760 -5.780 -7.350 12.151 hybrid contribution -0.642 0.060 0.454 0.788 sum 7.118 -5.721 -6.896 11.443 Atomic orbital electron populations 1.23829 0.95850 1.02048 1.00176 1.22390 0.95580 0.96394 1.00298 1.21900 0.91868 0.98423 0.99224 0.85693 1.23445 0.96450 1.04040 0.93640 1.19626 1.07817 0.83882 0.85799 1.43119 1.25238 1.08218 1.58413 1.16918 0.89738 0.93837 0.99600 1.19945 0.94010 0.98422 1.03315 1.20571 0.98300 0.97752 0.99057 1.17404 0.91020 0.91402 0.91212 1.19261 1.13609 0.94246 1.24084 0.90722 1.25723 0.99289 0.94269 0.93645 1.69955 1.35838 1.10219 1.25496 0.86629 0.83649 0.80254 0.78331 1.18463 1.19903 1.20353 1.20439 0.94365 1.00865 1.04927 1.18637 0.96625 0.94526 1.02394 1.20512 0.95571 0.98701 1.00592 1.23078 0.71503 0.88439 0.83348 1.90584 1.47433 1.19938 1.83218 1.86723 1.82278 1.39114 1.15605 1.22972 1.01379 0.88786 0.87856 1.21772 1.04443 1.01790 0.92898 0.88232 0.88330 0.86286 0.87037 0.86995 0.77081 0.89824 0.88495 0.91345 0.88989 0.93220 0.92761 0.93543 0.92130 0.91656 0.90292 0.90862 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.52 14.35 29.01 0.42 -2.10 16 2 C -0.13 -1.84 8.04 -36.03 -0.29 -2.13 16 3 C -0.09 -1.34 5.05 -91.77 -0.46 -1.80 16 4 H 0.13 1.78 8.14 -51.93 -0.42 1.36 16 5 C -0.14 -1.66 9.69 -26.73 -0.26 -1.92 16 6 C 0.12 1.92 1.76 -132.97 -0.23 1.69 16 7 N -0.71 -12.05 5.28 -46.93 -0.25 -12.30 16 8 C 0.09 1.97 6.05 -83.69 -0.51 1.47 16 9 C -0.14 -3.11 8.35 -39.76 -0.33 -3.44 16 10 C -0.14 -3.52 8.72 -39.27 -0.34 -3.86 16 11 C 0.09 2.44 5.48 -106.80 -0.58 1.86 16 12 C -0.48 -12.93 8.92 -37.87 -0.34 -13.27 16 13 H 0.07 1.96 7.99 -52.48 -0.42 1.54 16 14 C 0.09 2.27 4.78 -17.34 -0.08 2.19 16 15 N -0.79 -20.81 12.14 55.54 0.67 -20.14 16 16 Si 0.89 19.02 29.65 -169.99 -5.04 13.98 16 17 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 C -0.19 -4.49 9.37 -39.26 -0.37 -4.85 16 21 C -0.12 -2.52 5.86 -104.81 -0.61 -3.14 16 22 C -0.10 -1.62 9.50 36.01 0.34 -1.27 16 23 C 0.49 8.84 6.45 36.01 0.23 9.08 16 24 O -0.52 -9.50 14.21 -18.75 -0.27 -9.77 16 25 O -0.32 -6.12 8.83 -39.27 -0.35 -6.47 16 26 C 0.06 1.02 6.19 37.16 0.23 1.25 16 27 C -0.15 -2.22 10.29 37.16 0.38 -1.84 16 28 H 0.10 1.41 8.05 -52.49 -0.42 0.99 16 29 H 0.10 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.12 1.71 7.17 -52.48 -0.38 1.33 16 31 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.11 1.28 7.94 -51.93 -0.41 0.87 16 33 H 0.39 5.79 6.90 -40.82 -0.28 5.50 16 34 H 0.08 1.86 5.92 -52.48 -0.31 1.55 16 35 H 0.10 2.60 6.98 -52.49 -0.37 2.24 16 36 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 37 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 40 H 0.05 0.69 6.65 -51.93 -0.35 0.35 16 41 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 42 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 43 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 375.47 15.07 5.66 5.66 Total: -1.00 -29.17 375.47 -9.09 -38.26 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -6.72 Total: 12.86 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -2.81 Total: -22.09 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.43 Total: -32.44 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.61 Total: -16.23 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.04 Total: 13.98 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.17 -9.09 -38.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170924146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.220 kcal (2) G-P(sol) polarization free energy of solvation -29.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds