Wall clock time and date at job start Tue Mar 31 2020 10:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 119.99943 * 2 1 4 4 H 1.08998 * 115.56545 * 334.30514 * 3 2 1 5 5 C 1.53001 * 117.49638 * 188.62057 * 3 2 1 6 6 C 1.53001 * 117.49835 * 119.99818 * 3 2 1 7 7 N 1.46499 * 117.51699 * 214.97196 * 6 3 2 8 8 C 1.38847 * 120.00408 * 78.34156 * 7 6 3 9 9 C 1.39594 * 119.84104 * 352.36673 * 8 7 6 10 10 C 1.36324 * 120.15950 * 179.72020 * 9 8 7 11 11 C 1.40895 * 119.83484 * 0.55156 * 10 9 8 12 12 C 1.41137 * 120.15329 * 179.69980 * 11 10 9 13 13 H 1.08006 * 119.99891 * 209.84330 * 12 11 10 14 14 C 1.39865 * 120.00007 * 29.84245 * 12 11 10 15 15 N 1.30900 * 120.00075 * 29.64328 * 14 12 11 16 16 Si 1.86806 * 119.99922 * 209.63904 * 14 12 11 17 17 H 1.48501 * 109.47102 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46831 * 119.99902 * 16 14 12 19 19 H 1.48499 * 109.47120 * 240.00210 * 16 14 12 20 20 C 1.40872 * 119.69209 * 359.72480 * 11 10 9 21 21 C 1.36354 * 119.83570 * 359.97438 * 20 11 10 22 22 C 1.50699 * 119.91931 * 179.97438 * 21 20 11 23 23 C 1.50705 * 117.49760 * 359.97438 * 6 3 2 24 24 O 1.20822 * 120.00086 * 40.96465 * 23 6 3 25 25 O 1.34234 * 119.99625 * 220.96779 * 23 6 3 26 26 C 1.45202 * 116.99639 * 179.97438 * 25 23 6 27 27 C 1.52997 * 109.46670 * 179.97438 * 26 25 23 28 28 H 1.07999 * 119.99826 * 0.02562 * 1 2 3 29 29 H 1.08002 * 119.99892 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99765 * 179.97438 * 2 1 3 31 31 H 1.08998 * 117.49845 * 145.02471 * 5 3 2 32 32 H 1.08994 * 117.52123 * 359.97438 * 5 3 2 33 33 H 0.97003 * 119.99480 * 258.34159 * 7 6 3 34 34 H 1.08003 * 119.91826 * 359.97438 * 9 8 7 35 35 H 1.08002 * 120.07757 * 180.25064 * 10 9 8 36 36 H 0.97002 * 119.99828 * 179.97438 * 15 14 12 37 37 H 1.08001 * 120.08038 * 180.02562 * 20 11 10 38 38 H 1.09001 * 109.46890 * 270.02578 * 22 21 20 39 39 H 1.08994 * 109.47353 * 30.02608 * 22 21 20 40 40 H 1.09002 * 109.47075 * 150.02987 * 22 21 20 41 41 H 1.08995 * 109.46967 * 60.00182 * 26 25 23 42 42 H 1.09005 * 109.47095 * 300.00102 * 26 25 23 43 43 H 1.08995 * 109.47253 * 60.00387 * 27 26 25 44 44 H 1.09010 * 109.47085 * 180.02562 * 27 26 25 45 45 H 1.08998 * 109.47454 * 300.00278 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.5313 2.1555 -0.4263 5 6 3.5788 1.2459 -0.2034 6 6 3.0043 1.5776 1.1754 7 7 3.1213 2.9614 1.6419 8 6 2.1303 3.5094 2.4452 9 6 0.9510 2.7989 2.6756 10 6 -0.0239 3.3283 3.4679 11 6 0.1561 4.6009 4.0453 12 6 -0.8515 5.1581 4.8614 13 1 -0.9747 6.2300 4.9114 14 6 -1.6905 4.3223 5.6055 15 7 -1.2524 3.1634 6.0280 16 14 -3.4363 4.8599 5.9965 17 1 -3.6847 6.2008 5.4087 18 1 -4.3955 3.8827 5.4220 19 1 -3.6166 4.9234 7.4692 20 6 1.3463 5.3147 3.8037 21 6 2.3156 4.7701 3.0141 22 6 3.5893 5.5323 2.7539 23 6 3.1061 0.5206 2.2447 24 8 3.1414 -0.6475 1.9381 25 8 3.1576 0.8770 3.5379 26 6 3.2546 -0.1941 4.5134 27 6 3.3022 0.4018 5.9218 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 4.0434 2.0574 -0.7635 32 1 4.0310 0.2633 -0.3369 33 1 3.8913 3.4948 1.3896 34 1 0.8124 1.8256 2.2285 35 1 -0.9341 2.7757 3.6485 36 1 -1.8342 2.5839 6.5444 37 1 1.4911 6.2904 4.2434 38 1 3.4672 6.1512 1.8650 39 1 3.8142 6.1674 3.6107 40 1 4.4078 4.8295 2.5978 41 1 4.1622 -0.7697 4.3319 42 1 2.3862 -0.8469 4.4238 43 1 2.3948 0.9776 6.1036 44 1 3.3755 -0.4023 6.6542 45 1 4.1707 1.0543 6.0111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170924146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:17 Heat of formation + Delta-G solvation = -31.129122 kcal Electronic energy + Delta-G solvation = -27174.293929 eV Core-core repulsion = 23543.335827 eV Total energy + Delta-G solvation = -3630.958102 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.90562 -40.03245 -38.94965 -37.35489 -35.98896 -34.48983 -33.12777 -32.70787 -32.54933 -30.28408 -27.50082 -26.58352 -25.91167 -23.93529 -23.68074 -22.65658 -21.80593 -21.09003 -20.74103 -18.79047 -18.66195 -17.92754 -17.54672 -17.36577 -16.81712 -16.69757 -15.53327 -15.36855 -15.21362 -15.01799 -14.73367 -14.48361 -14.26834 -14.12759 -13.73124 -13.64161 -13.58179 -13.20947 -13.17608 -12.96882 -12.82375 -12.78368 -12.53338 -12.47665 -12.33714 -12.29196 -11.97535 -11.86337 -11.57297 -11.50447 -11.31969 -11.17983 -10.97063 -10.56408 -9.93591 -9.17263 -8.65359 -8.12127 -5.97871 0.85141 1.12459 1.17972 1.34497 1.38829 1.51087 1.54959 1.74515 2.26832 2.49319 2.79704 2.88523 3.56068 3.65292 3.72113 3.85497 3.95558 4.03134 4.10664 4.23092 4.27176 4.38037 4.45124 4.57434 4.69357 4.72581 4.78175 4.84733 4.86044 4.97520 5.00947 5.11768 5.12633 5.16749 5.17650 5.33689 5.48230 5.51852 5.66189 5.68049 5.78571 5.89134 5.96695 6.23207 6.40136 6.59383 6.74930 6.88462 7.09982 7.13206 7.31008 8.44062 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.012008 B = 0.004726 C = 0.004626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.238262 B = 5923.431261 C = 6050.820214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.135 4.135 3 C -0.100 4.100 4 H 0.125 0.875 5 C -0.097 4.097 6 C 0.092 3.908 7 N -0.700 5.700 8 C 0.118 3.882 9 C -0.140 4.140 10 C -0.157 4.157 11 C 0.057 3.943 12 C -0.520 4.520 13 H 0.067 0.933 14 C 0.048 3.952 15 N -0.827 5.827 16 Si 0.959 3.041 17 H -0.259 1.259 18 H -0.269 1.269 19 H -0.268 1.268 20 C -0.198 4.198 21 C -0.125 4.125 22 C -0.091 4.091 23 C 0.487 3.513 24 O -0.531 6.531 25 O -0.348 6.348 26 C 0.059 3.941 27 C -0.144 4.144 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.146 0.854 32 H 0.123 0.877 33 H 0.408 0.592 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.282 0.718 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.041 0.959 44 H 0.105 0.895 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.802 -5.227 -9.078 14.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.153 4.153 3 C -0.120 4.120 4 H 0.143 0.857 5 C -0.134 4.134 6 C -0.001 4.001 7 N -0.337 5.337 8 C 0.021 3.979 9 C -0.162 4.162 10 C -0.177 4.177 11 C 0.054 3.946 12 C -0.551 4.551 13 H 0.085 0.915 14 C -0.166 4.166 15 N -0.454 5.454 16 Si 0.780 3.220 17 H -0.183 1.183 18 H -0.194 1.194 19 H -0.193 1.193 20 C -0.218 4.218 21 C -0.128 4.128 22 C -0.148 4.148 23 C 0.331 3.669 24 O -0.421 6.421 25 O -0.264 6.264 26 C -0.015 4.015 27 C -0.201 4.201 28 H 0.110 0.890 29 H 0.130 0.870 30 H 0.138 0.862 31 H 0.163 0.837 32 H 0.141 0.859 33 H 0.247 0.753 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.124 0.876 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.717 -5.903 -8.964 14.478 hybrid contribution -1.081 0.006 0.850 1.375 sum 8.636 -5.896 -8.114 13.236 Atomic orbital electron populations 1.23967 0.96052 1.02433 0.99849 1.22462 0.95707 0.96612 1.00526 1.21950 0.93586 0.98287 0.98157 0.85750 1.23668 0.94442 1.05704 0.89621 1.19894 1.11170 0.82516 0.86498 1.42990 1.24475 1.08948 1.57240 1.16957 0.89541 0.93236 0.98214 1.19937 0.94446 0.98694 1.03101 1.20422 0.98437 0.97964 1.00855 1.17680 0.92275 0.92300 0.92334 1.19441 1.15725 0.94149 1.25761 0.91485 1.26469 1.02832 0.94235 0.93078 1.69998 1.37286 1.11509 1.26574 0.85539 0.78291 0.79685 0.78448 1.18292 1.19409 1.19287 1.20638 0.94508 1.00976 1.05630 1.19091 0.97853 0.94893 1.01006 1.20534 0.93420 0.99005 1.01834 1.23476 0.71170 0.88944 0.83349 1.90566 1.47993 1.20304 1.83247 1.86705 1.82492 1.40622 1.16583 1.23160 1.02011 0.88469 0.87824 1.21749 1.02636 1.02503 0.93197 0.89003 0.86954 0.86203 0.83650 0.85890 0.75306 0.89561 0.91089 0.90827 0.88821 0.90916 0.92303 0.91301 0.90007 0.92454 0.93958 0.87623 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.05 14.35 67.78 0.97 -4.07 16 2 C -0.13 -3.68 8.04 25.65 0.21 -3.47 16 3 C -0.10 -2.61 5.05 -11.54 -0.06 -2.67 16 4 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 5 C -0.10 -1.93 9.69 30.60 0.30 -1.64 16 6 C 0.09 2.67 1.76 2.86 0.01 2.68 16 7 N -0.70 -21.75 5.28 -302.38 -1.60 -23.35 16 8 C 0.12 4.82 6.05 38.67 0.23 5.06 16 9 C -0.14 -6.56 8.35 22.15 0.18 -6.38 16 10 C -0.16 -8.47 8.72 22.47 0.20 -8.28 16 11 C 0.06 3.15 5.48 -21.27 -0.12 3.03 16 12 C -0.52 -29.38 8.92 23.38 0.21 -29.17 16 13 H 0.07 3.72 7.99 -2.91 -0.02 3.69 16 14 C 0.05 2.58 4.78 85.23 0.41 2.99 16 15 N -0.83 -45.80 12.14 21.82 0.26 -45.53 16 16 Si 0.96 40.49 29.65 68.60 2.03 42.52 16 17 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 18 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 19 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 20 C -0.20 -9.73 9.37 22.47 0.21 -9.52 16 21 C -0.12 -5.19 5.86 -19.99 -0.12 -5.30 16 22 C -0.09 -2.76 9.50 71.24 0.68 -2.08 16 23 C 0.49 16.79 6.45 71.24 0.46 17.25 16 24 O -0.53 -18.57 14.21 21.97 0.31 -18.25 16 25 O -0.35 -13.06 8.83 -51.45 -0.45 -13.52 16 26 C 0.06 1.85 6.19 71.98 0.45 2.29 16 27 C -0.14 -4.18 10.29 71.98 0.74 -3.44 16 28 H 0.09 2.62 8.05 -2.91 -0.02 2.59 16 29 H 0.11 2.66 8.06 -2.91 -0.02 2.64 16 30 H 0.12 3.25 7.17 -2.91 -0.02 3.23 16 31 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.12 2.27 7.94 -2.39 -0.02 2.25 16 33 H 0.41 10.31 6.90 -92.71 -0.64 9.67 16 34 H 0.09 3.93 5.92 -2.91 -0.02 3.91 16 35 H 0.07 4.09 6.98 -2.91 -0.02 4.07 16 36 H 0.28 14.20 8.30 -92.71 -0.77 13.43 16 37 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.06 1.75 8.08 -2.39 -0.02 1.73 16 40 H 0.07 1.77 6.65 -2.39 -0.02 1.76 16 41 H 0.08 2.19 8.13 -2.39 -0.02 2.17 16 42 H 0.06 1.85 8.13 -2.38 -0.02 1.83 16 43 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 45 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -66.97 375.47 5.86 -61.11 By element: Atomic # 1 Polarization: 39.39 SS G_CDS: 0.35 Total: 39.74 kcal Atomic # 6 Polarization: -47.68 SS G_CDS: 4.95 Total: -42.73 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -1.33 Total: -68.88 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.14 Total: -31.77 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -66.97 5.86 -61.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170924146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.984 kcal (2) G-P(sol) polarization free energy of solvation -66.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds