Wall clock time and date at job start Tue Mar 31 2020 11:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.43202 * 119.99883 * 27.32279 * 3 2 1 5 5 N 3.51039 * 140.68302 * 27.32148 * 2 1 3 6 6 C 1.41147 * 119.99954 * 207.32300 * 3 2 1 7 7 C 1.38996 * 119.99830 * 352.73802 * 6 3 2 8 8 H 1.07998 * 119.99931 * 135.43268 * 7 6 3 9 9 C 1.40816 * 119.99753 * 315.42817 * 7 6 3 10 10 N 1.30339 * 119.99782 * 155.56632 * 9 7 6 11 11 Si 1.86794 * 120.00266 * 335.56369 * 9 7 6 12 12 H 1.48506 * 109.47228 * 95.35031 * 11 9 7 13 13 H 1.48498 * 109.47601 * 215.34861 * 11 9 7 14 14 H 1.48495 * 109.47264 * 335.35133 * 11 9 7 15 15 N 1.38224 * 119.99935 * 172.73289 * 6 3 2 16 16 C 1.46501 * 120.00020 * 185.29263 * 15 6 3 17 17 C 1.53005 * 109.47155 * 275.46199 * 16 15 6 18 18 C 1.53012 * 109.47407 * 179.97438 * 17 16 15 19 19 C 1.52923 * 109.49422 * 59.89233 * 18 17 16 20 20 C 1.53106 * 109.55271 * 60.34393 * 19 18 17 21 21 C 1.53107 * 109.15446 * 176.84803 * 20 19 18 22 22 O 1.42895 * 109.41558 * 302.47901 * 21 20 19 23 23 C 1.42905 * 114.12851 * 61.14868 * 22 21 20 24 24 C 1.53111 * 109.40192 * 298.83149 * 23 22 21 25 25 C 1.52942 * 109.60106 * 300.16838 * 19 18 17 26 26 C 1.53000 * 109.49221 * 59.85869 * 25 19 18 27 27 H 0.97002 * 120.00011 * 180.02562 * 10 9 7 28 28 H 0.96995 * 120.00172 * 5.29085 * 15 6 3 29 29 H 1.09004 * 109.47339 * 35.46146 * 16 15 6 30 30 H 1.09001 * 109.46982 * 299.95976 * 17 16 15 31 31 H 1.09002 * 109.47584 * 59.95698 * 17 16 15 32 32 H 1.08996 * 109.46595 * 299.88217 * 18 17 16 33 33 H 1.08999 * 109.46856 * 179.89677 * 18 17 16 34 34 H 1.09004 * 109.52707 * 296.75530 * 20 19 18 35 35 H 1.09007 * 109.52626 * 56.94497 * 20 19 18 36 36 H 1.09000 * 109.47755 * 182.49908 * 21 20 19 37 37 H 1.08998 * 109.47960 * 62.46200 * 21 20 19 38 38 H 1.09009 * 109.48047 * 178.85501 * 23 22 21 39 39 H 1.08996 * 109.48733 * 58.81601 * 23 22 21 40 40 H 1.08996 * 109.52267 * 297.65775 * 24 23 22 41 41 H 1.08996 * 109.52330 * 177.45862 * 24 23 22 42 42 H 1.09001 * 109.46530 * 299.84938 * 25 19 18 43 43 H 1.08998 * 109.46307 * 179.86509 * 25 19 18 44 44 H 1.09000 * 109.47820 * 180.02562 * 26 25 19 45 45 H 1.09005 * 109.47657 * 60.06121 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2845 -1.1009 -0.5692 5 7 3.8519 -1.9761 -1.0209 6 6 3.2733 1.0870 0.5611 7 6 2.5861 2.2216 0.9762 8 1 2.8220 2.6785 1.9259 9 6 1.5824 2.7754 0.1584 10 7 0.6352 3.4975 0.6877 11 14 1.6085 2.4752 -1.6851 12 1 0.7319 1.3217 -2.0113 13 1 1.1166 3.6857 -2.3909 14 1 2.9975 2.1795 -2.1189 15 7 4.6472 1.0223 0.6978 16 6 5.3664 2.0982 1.3845 17 6 5.6549 3.2304 0.3967 18 6 6.4055 4.3544 1.1140 19 6 7.7229 3.8136 1.6714 20 6 8.5871 3.2861 0.5229 21 6 9.9343 2.8198 1.0811 22 8 10.5672 3.9045 1.7627 23 6 9.8258 4.4069 2.8764 24 6 8.4745 4.9376 2.3900 25 6 7.4360 2.6799 2.6571 26 6 6.6856 1.5566 1.9389 27 1 -0.0564 3.8787 0.1244 28 1 5.1352 0.2647 0.3391 29 1 4.7562 2.4778 2.2041 30 1 6.2657 2.8510 -0.4225 31 1 4.7152 3.6157 0.0009 32 1 5.7940 4.7352 1.9320 33 1 6.6126 5.1601 0.4097 34 1 8.0822 2.4482 0.0421 35 1 8.7499 4.0808 -0.2053 36 1 10.5706 2.4843 0.2622 37 1 9.7739 1.9968 1.7777 38 1 10.3842 5.2142 3.3504 39 1 9.6636 3.6051 3.5967 40 1 8.6354 5.7668 1.7012 41 1 7.8891 5.2798 3.2433 42 1 6.8260 3.0577 3.4776 43 1 8.3765 2.2946 3.0511 44 1 6.4809 0.7489 2.6417 45 1 7.2961 1.1779 1.1190 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173042109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:14 Heat of formation + Delta-G solvation = -7.825016 kcal Electronic energy + Delta-G solvation = -26978.191296 eV Core-core repulsion = 23380.536487 eV Total energy + Delta-G solvation = -3597.654809 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.76207 -38.21962 -36.77030 -35.04230 -34.83696 -33.64925 -32.27678 -31.23027 -30.84762 -29.49023 -26.93896 -26.49225 -23.82478 -23.58522 -22.26877 -21.04062 -20.49406 -18.54332 -18.39389 -17.55924 -16.58499 -16.17166 -16.05337 -15.57308 -15.19739 -14.72367 -14.55618 -14.40157 -14.02285 -13.62958 -13.13704 -13.03229 -12.83070 -12.70849 -12.39334 -12.26944 -12.11703 -12.03572 -11.86870 -11.84701 -11.72394 -11.58956 -11.43537 -11.31447 -11.05981 -10.96831 -10.76030 -10.61302 -10.53671 -10.31137 -10.24320 -10.14091 -9.95081 -9.57990 -9.40043 -9.15164 -7.33517 -6.72567 -5.27425 2.52028 3.05382 3.12765 3.22561 3.73222 3.77487 3.84876 3.90424 4.05184 4.32462 4.44533 4.50232 4.56338 4.65959 4.86755 4.95665 5.02924 5.08023 5.15042 5.25084 5.29570 5.31141 5.48180 5.53057 5.56142 5.58182 5.62099 5.64182 5.68950 5.78165 5.81420 5.85560 5.99948 6.11528 6.16011 6.19721 6.21930 6.29435 6.38875 6.53911 6.62668 6.71154 7.04466 7.12928 7.31489 7.79990 7.99204 8.38334 8.52602 8.87542 9.20957 9.63742 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018931 B = 0.004019 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.677719 B = 6966.058266 C = 7680.965652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C 0.320 3.680 3 C -0.323 4.323 4 C 0.305 3.695 5 N -0.534 5.534 6 C 0.409 3.591 7 C -0.458 4.458 8 H 0.111 0.889 9 C 0.112 3.888 10 N -0.753 5.753 11 Si 0.890 3.110 12 H -0.246 1.246 13 H -0.282 1.282 14 H -0.245 1.245 15 N -0.731 5.731 16 C 0.161 3.839 17 C -0.133 4.133 18 C -0.103 4.103 19 C -0.058 4.058 20 C -0.148 4.148 21 C 0.058 3.942 22 O -0.386 6.386 23 C 0.059 3.941 24 C -0.145 4.145 25 C -0.107 4.107 26 C -0.131 4.131 27 H 0.296 0.704 28 H 0.387 0.613 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.710 7.804 4.235 18.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.198 5.198 2 C 0.011 3.989 3 C -0.343 4.343 4 C -0.001 4.001 5 N -0.217 5.217 6 C 0.294 3.706 7 C -0.490 4.490 8 H 0.129 0.871 9 C -0.118 4.118 10 N -0.373 5.373 11 Si 0.713 3.287 12 H -0.169 1.169 13 H -0.208 1.208 14 H -0.168 1.168 15 N -0.356 5.356 16 C 0.055 3.945 17 C -0.172 4.172 18 C -0.141 4.141 19 C -0.058 4.058 20 C -0.185 4.185 21 C -0.018 4.018 22 O -0.305 6.305 23 C -0.018 4.018 24 C -0.183 4.183 25 C -0.145 4.145 26 C -0.169 4.169 27 H 0.107 0.893 28 H 0.221 0.779 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.861 6.847 3.635 17.654 hybrid contribution -0.122 -0.039 -0.561 0.575 sum 15.738 6.809 3.074 17.421 Atomic orbital electron populations 1.81040 1.12138 1.10529 1.16125 1.24383 0.91329 0.92098 0.91062 1.12685 0.83495 0.98169 1.39972 1.25368 0.92627 0.91730 0.90407 1.81110 1.10073 1.12364 1.18164 1.17077 0.81375 0.89793 0.82312 1.18911 1.14406 1.09025 1.06624 0.87141 1.26076 0.91350 0.92163 1.02189 1.69436 1.06460 1.21491 1.39887 0.86562 0.82178 0.79371 0.80623 1.16949 1.20823 1.16766 1.45134 1.04650 1.24204 1.61598 1.20771 0.91569 0.87462 0.94664 1.21991 1.01119 0.95640 0.98423 1.21526 0.94611 0.97852 1.00120 1.20551 0.95272 0.94886 0.95108 1.22329 0.95739 1.02254 0.98213 1.22632 0.94060 0.88881 0.96239 1.87903 1.46238 1.51317 1.45045 1.22608 0.92483 0.98322 0.88364 1.22239 0.96454 0.98492 1.01076 1.21613 0.99929 0.95167 0.97806 1.21883 0.96400 0.98202 1.00401 0.89298 0.77889 0.89653 0.92182 0.90043 0.91503 0.92063 0.89981 0.91231 0.89292 0.92994 0.89333 0.93043 0.91111 0.90798 0.91379 0.91873 0.91442 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -13.36 18.02 41.84 0.75 -12.60 16 2 C 0.32 7.86 10.43 -22.47 -0.23 7.62 16 3 C -0.32 -7.18 4.49 -104.94 -0.47 -7.65 16 4 C 0.31 6.74 14.11 -22.45 -0.32 6.42 16 5 N -0.53 -12.03 18.54 41.86 0.78 -11.25 16 6 C 0.41 8.25 5.49 -83.60 -0.46 7.79 16 7 C -0.46 -9.79 7.36 -38.33 -0.28 -10.08 16 8 H 0.11 2.38 6.93 -52.49 -0.36 2.02 16 9 C 0.11 2.53 4.42 -17.21 -0.08 2.45 16 10 N -0.75 -17.65 13.90 55.59 0.77 -16.88 16 11 Si 0.89 19.17 24.93 -169.99 -4.24 14.93 16 12 H -0.25 -5.78 5.99 56.52 0.34 -5.44 16 13 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 14 H -0.24 -5.10 7.11 56.52 0.40 -4.70 16 15 N -0.73 -12.04 5.13 -51.91 -0.27 -12.31 16 16 C 0.16 2.16 2.27 -67.93 -0.15 2.01 16 17 C -0.13 -1.72 5.17 -26.72 -0.14 -1.86 16 18 C -0.10 -1.10 4.74 -26.76 -0.13 -1.22 16 19 C -0.06 -0.54 0.51 -154.46 -0.08 -0.62 16 20 C -0.15 -1.38 4.22 -26.62 -0.11 -1.50 16 21 C 0.06 0.53 6.57 37.21 0.24 0.78 16 22 O -0.39 -4.07 10.76 -35.23 -0.38 -4.45 16 23 C 0.06 0.50 6.57 37.21 0.24 0.74 16 24 C -0.14 -1.22 4.92 -26.61 -0.13 -1.35 16 25 C -0.11 -0.99 4.17 -26.76 -0.11 -1.10 16 26 C -0.13 -1.41 5.12 -26.73 -0.14 -1.54 16 27 H 0.30 6.50 8.29 -40.82 -0.34 6.16 16 28 H 0.39 6.22 7.44 -40.82 -0.30 5.92 16 29 H 0.09 1.25 6.66 -51.93 -0.35 0.90 16 30 H 0.06 0.76 6.52 -51.93 -0.34 0.42 16 31 H 0.08 1.25 7.46 -51.93 -0.39 0.86 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.79 4.86 -51.93 -0.25 0.54 16 35 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.45 6.60 -51.93 -0.34 0.10 16 38 H 0.09 0.64 8.14 -51.92 -0.42 0.21 16 39 H 0.05 0.40 6.60 -51.93 -0.34 0.06 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.54 5.00 -51.93 -0.26 0.28 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.68 6.38 -51.93 -0.33 0.35 16 LS Contribution 348.07 15.07 5.25 5.25 Total: -1.00 -26.26 348.07 -5.95 -32.21 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.27 Total: 4.21 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.34 Total: 0.90 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 2.04 Total: -53.04 kcal Atomic # 8 Polarization: -4.07 SS G_CDS: -0.38 Total: -4.45 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.24 Total: 14.93 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -26.26 -5.95 -32.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173042109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.382 kcal (2) G-P(sol) polarization free energy of solvation -26.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds