Wall clock time and date at job start Tue Mar 31 2020 11:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.43202 * 119.99883 * 27.32279 * 3 2 1 5 5 N 3.51039 * 140.68302 * 27.32148 * 2 1 3 6 6 C 1.41147 * 119.99954 * 207.32300 * 3 2 1 7 7 C 1.38996 * 119.99830 * 352.73802 * 6 3 2 8 8 H 1.07998 * 119.99931 * 135.43268 * 7 6 3 9 9 C 1.40816 * 119.99753 * 315.42817 * 7 6 3 10 10 N 1.30339 * 119.99782 * 155.56632 * 9 7 6 11 11 Si 1.86794 * 120.00266 * 335.56369 * 9 7 6 12 12 H 1.48506 * 109.47228 * 95.35031 * 11 9 7 13 13 H 1.48498 * 109.47601 * 215.34861 * 11 9 7 14 14 H 1.48495 * 109.47264 * 335.35133 * 11 9 7 15 15 N 1.38224 * 119.99935 * 172.73289 * 6 3 2 16 16 C 1.46501 * 120.00020 * 185.29263 * 15 6 3 17 17 C 1.53005 * 109.47155 * 275.46199 * 16 15 6 18 18 C 1.53012 * 109.47407 * 179.97438 * 17 16 15 19 19 C 1.52923 * 109.49422 * 59.89233 * 18 17 16 20 20 C 1.53106 * 109.55271 * 60.34393 * 19 18 17 21 21 C 1.53107 * 109.15446 * 176.84803 * 20 19 18 22 22 O 1.42895 * 109.41558 * 302.47901 * 21 20 19 23 23 C 1.42905 * 114.12851 * 61.14868 * 22 21 20 24 24 C 1.53111 * 109.40192 * 298.83149 * 23 22 21 25 25 C 1.52942 * 109.60106 * 300.16838 * 19 18 17 26 26 C 1.53000 * 109.49221 * 59.85869 * 25 19 18 27 27 H 0.97002 * 120.00011 * 180.02562 * 10 9 7 28 28 H 0.96995 * 120.00172 * 5.29085 * 15 6 3 29 29 H 1.09004 * 109.47339 * 35.46146 * 16 15 6 30 30 H 1.09001 * 109.46982 * 299.95976 * 17 16 15 31 31 H 1.09002 * 109.47584 * 59.95698 * 17 16 15 32 32 H 1.08996 * 109.46595 * 299.88217 * 18 17 16 33 33 H 1.08999 * 109.46856 * 179.89677 * 18 17 16 34 34 H 1.09004 * 109.52707 * 296.75530 * 20 19 18 35 35 H 1.09007 * 109.52626 * 56.94497 * 20 19 18 36 36 H 1.09000 * 109.47755 * 182.49908 * 21 20 19 37 37 H 1.08998 * 109.47960 * 62.46200 * 21 20 19 38 38 H 1.09009 * 109.48047 * 178.85501 * 23 22 21 39 39 H 1.08996 * 109.48733 * 58.81601 * 23 22 21 40 40 H 1.08996 * 109.52267 * 297.65775 * 24 23 22 41 41 H 1.08996 * 109.52330 * 177.45862 * 24 23 22 42 42 H 1.09001 * 109.46530 * 299.84938 * 25 19 18 43 43 H 1.08998 * 109.46307 * 179.86509 * 25 19 18 44 44 H 1.09000 * 109.47820 * 180.02562 * 26 25 19 45 45 H 1.09005 * 109.47657 * 60.06121 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2845 -1.1009 -0.5692 5 7 3.8519 -1.9761 -1.0209 6 6 3.2733 1.0870 0.5611 7 6 2.5861 2.2216 0.9762 8 1 2.8220 2.6785 1.9259 9 6 1.5824 2.7754 0.1584 10 7 0.6352 3.4975 0.6877 11 14 1.6085 2.4752 -1.6851 12 1 0.7319 1.3217 -2.0113 13 1 1.1166 3.6857 -2.3909 14 1 2.9975 2.1795 -2.1189 15 7 4.6472 1.0223 0.6978 16 6 5.3664 2.0982 1.3845 17 6 5.6549 3.2304 0.3967 18 6 6.4055 4.3544 1.1140 19 6 7.7229 3.8136 1.6714 20 6 8.5871 3.2861 0.5229 21 6 9.9343 2.8198 1.0811 22 8 10.5672 3.9045 1.7627 23 6 9.8258 4.4069 2.8764 24 6 8.4745 4.9376 2.3900 25 6 7.4360 2.6799 2.6571 26 6 6.6856 1.5566 1.9389 27 1 -0.0564 3.8787 0.1244 28 1 5.1352 0.2647 0.3391 29 1 4.7562 2.4778 2.2041 30 1 6.2657 2.8510 -0.4225 31 1 4.7152 3.6157 0.0009 32 1 5.7940 4.7352 1.9320 33 1 6.6126 5.1601 0.4097 34 1 8.0822 2.4482 0.0421 35 1 8.7499 4.0808 -0.2053 36 1 10.5706 2.4843 0.2622 37 1 9.7739 1.9968 1.7777 38 1 10.3842 5.2142 3.3504 39 1 9.6636 3.6051 3.5967 40 1 8.6354 5.7668 1.7012 41 1 7.8891 5.2798 3.2433 42 1 6.8260 3.0577 3.4776 43 1 8.3765 2.2946 3.0511 44 1 6.4809 0.7489 2.6417 45 1 7.2961 1.1779 1.1190 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173042109.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:14 Heat of formation + Delta-G solvation = -22.536492 kcal Electronic energy + Delta-G solvation = -26978.829233 eV Core-core repulsion = 23380.536487 eV Total energy + Delta-G solvation = -3598.292746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.57557 -39.48276 -38.06282 -36.69487 -36.57027 -35.27960 -33.51274 -31.96966 -31.74651 -30.80381 -28.66917 -27.48087 -24.57444 -24.43293 -23.18419 -22.57075 -21.57766 -20.32413 -19.39004 -19.01403 -17.70522 -17.19930 -17.15157 -16.84910 -16.33149 -15.59990 -15.48394 -15.19208 -15.11290 -14.94173 -14.82685 -14.56148 -14.35127 -13.99667 -13.76019 -13.68531 -13.51405 -13.42858 -13.10341 -12.98896 -12.86314 -12.79525 -12.62882 -12.57365 -12.46916 -12.23542 -12.12565 -11.93779 -11.82102 -11.54767 -11.20203 -11.16490 -10.95758 -10.84911 -10.63949 -10.13691 -9.09691 -8.36131 -7.02871 0.80216 1.33128 1.36864 1.49193 1.95763 2.10404 2.19370 2.31055 2.56750 2.82318 3.08557 3.33294 3.72567 3.72949 3.79071 3.89070 4.08470 4.19988 4.26146 4.37796 4.40975 4.46046 4.49371 4.53151 4.63226 4.69613 4.73134 4.83810 4.87081 4.90136 4.93427 4.99757 5.04871 5.13143 5.20258 5.27596 5.30193 5.35699 5.40001 5.43670 5.51374 5.65631 5.66797 5.75200 6.12036 6.30935 6.38334 6.76174 7.00083 7.10418 7.32415 7.91066 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018931 B = 0.004019 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.677719 B = 6966.058266 C = 7680.965652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C 0.322 3.678 3 C -0.333 4.333 4 C 0.313 3.687 5 N -0.539 5.539 6 C 0.424 3.576 7 C -0.463 4.463 8 H 0.109 0.891 9 C 0.099 3.901 10 N -0.779 5.779 11 Si 0.910 3.090 12 H -0.274 1.274 13 H -0.269 1.269 14 H -0.234 1.234 15 N -0.717 5.717 16 C 0.157 3.843 17 C -0.129 4.129 18 C -0.098 4.098 19 C -0.054 4.054 20 C -0.145 4.145 21 C 0.058 3.942 22 O -0.405 6.405 23 C 0.056 3.944 24 C -0.141 4.141 25 C -0.102 4.102 26 C -0.124 4.124 27 H 0.299 0.701 28 H 0.393 0.607 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.974 8.074 4.809 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.231 5.231 2 C 0.014 3.986 3 C -0.354 4.354 4 C 0.006 3.994 5 N -0.223 5.223 6 C 0.306 3.694 7 C -0.495 4.495 8 H 0.126 0.874 9 C -0.129 4.129 10 N -0.401 5.401 11 Si 0.732 3.268 12 H -0.199 1.199 13 H -0.195 1.195 14 H -0.156 1.156 15 N -0.340 5.340 16 C 0.053 3.947 17 C -0.168 4.168 18 C -0.136 4.136 19 C -0.054 4.054 20 C -0.183 4.183 21 C -0.019 4.019 22 O -0.324 6.324 23 C -0.021 4.021 24 C -0.179 4.179 25 C -0.140 4.140 26 C -0.162 4.162 27 H 0.111 0.889 28 H 0.227 0.773 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 18.177 7.133 4.212 19.975 hybrid contribution -0.766 -0.133 -0.726 1.064 sum 17.411 7.000 3.485 19.086 Atomic orbital electron populations 1.81022 1.13101 1.11509 1.17516 1.24780 0.91872 0.91426 0.90473 1.12794 0.82679 0.99066 1.40864 1.25240 0.92458 0.91506 0.90187 1.81118 1.10353 1.12364 1.18416 1.16942 0.82709 0.88694 0.81069 1.18899 1.14564 1.09366 1.06701 0.87363 1.26354 0.91259 0.92030 1.03246 1.69453 1.07202 1.22907 1.40492 0.86277 0.82064 0.78676 0.79778 1.19932 1.19474 1.15629 1.45232 1.03398 1.24920 1.60458 1.20992 0.92530 0.86868 0.94304 1.21914 1.00247 0.96060 0.98575 1.21473 0.95108 0.97059 0.99936 1.20505 0.94458 0.95267 0.95202 1.22292 0.96000 1.01940 0.98051 1.22693 0.93814 0.88775 0.96600 1.87886 1.47055 1.51767 1.45736 1.22742 0.92321 0.98993 0.88006 1.22201 0.96581 0.97880 1.01213 1.21592 1.00358 0.94467 0.97591 1.21834 0.94829 0.98768 1.00742 0.88939 0.77265 0.90594 0.91752 0.92646 0.91687 0.91747 0.90229 0.91838 0.88695 0.92233 0.88196 0.92167 0.91591 0.89814 0.91085 0.90442 0.91228 0.90792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -28.62 18.02 19.00 0.34 -28.28 16 2 C 0.32 15.80 10.43 88.33 0.92 16.73 16 3 C -0.33 -14.56 4.49 -20.07 -0.09 -14.65 16 4 C 0.31 13.39 14.11 88.33 1.25 14.64 16 5 N -0.54 -23.44 18.54 19.01 0.35 -23.09 16 6 C 0.42 16.68 5.49 39.03 0.21 16.89 16 7 C -0.46 -19.59 7.36 23.08 0.17 -19.42 16 8 H 0.11 4.63 6.93 -2.91 -0.02 4.61 16 9 C 0.10 4.45 4.42 85.54 0.38 4.83 16 10 N -0.78 -36.66 13.90 21.97 0.31 -36.35 16 11 Si 0.91 38.66 24.93 68.60 1.71 40.37 16 12 H -0.27 -12.99 5.99 99.48 0.60 -12.39 16 13 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 14 H -0.23 -9.41 7.11 99.48 0.71 -8.70 16 15 N -0.72 -22.44 5.13 -318.15 -1.63 -24.07 16 16 C 0.16 3.96 2.27 44.99 0.10 4.06 16 17 C -0.13 -3.16 5.17 30.60 0.16 -3.00 16 18 C -0.10 -1.91 4.74 30.57 0.14 -1.77 16 19 C -0.05 -0.87 0.51 -52.15 -0.03 -0.90 16 20 C -0.15 -2.38 4.22 30.67 0.13 -2.25 16 21 C 0.06 0.90 6.57 72.02 0.47 1.37 16 22 O -0.41 -7.57 10.76 -148.98 -1.60 -9.18 16 23 C 0.06 0.78 6.57 72.02 0.47 1.26 16 24 C -0.14 -2.02 4.92 30.67 0.15 -1.87 16 25 C -0.10 -1.58 4.17 30.58 0.13 -1.46 16 26 C -0.12 -2.33 5.12 30.60 0.16 -2.17 16 27 H 0.30 13.25 8.29 -92.71 -0.77 12.48 16 28 H 0.39 11.77 7.44 -92.71 -0.69 11.08 16 29 H 0.08 2.11 6.66 -2.39 -0.02 2.10 16 30 H 0.06 1.51 6.52 -2.39 -0.02 1.50 16 31 H 0.05 1.66 7.46 -2.39 -0.02 1.64 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.34 4.86 -2.38 -0.01 1.33 16 35 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.06 0.84 6.60 -2.39 -0.02 0.82 16 38 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.06 0.74 6.60 -2.39 -0.02 0.73 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 1.04 5.00 -2.39 -0.01 1.02 16 44 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.07 1.31 6.38 -2.38 -0.02 1.29 16 Total: -1.00 -54.85 348.07 4.44 -50.41 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.24 Total: 17.90 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 4.73 Total: 12.30 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -0.63 Total: -111.79 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -1.60 Total: -9.18 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 1.71 Total: 40.37 kcal Total: -54.85 4.44 -50.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173042109.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.871 kcal (2) G-P(sol) polarization free energy of solvation -54.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds