Wall clock time and date at job start Tue Mar 31 2020 11:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35691 * 116.99780 * 2 1 4 4 C 1.38603 * 120.16093 * 0.02602 * 3 2 1 5 5 C 1.38127 * 120.10707 * 179.97438 * 4 3 2 6 6 C 1.38577 * 120.43669 * 0.02562 * 5 4 3 7 7 C 1.37748 * 120.31609 * 359.68342 * 6 5 4 8 8 C 1.39925 * 119.88209 * 0.59526 * 7 6 5 9 9 C 1.46944 * 120.21400 * 179.70196 * 8 7 6 10 10 C 1.34999 * 119.99784 * 359.72303 * 9 8 7 11 11 C 1.46250 * 119.99767 * 180.02562 * 10 9 8 12 12 O 1.21720 * 120.00147 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99798 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00223 * 179.97438 * 13 11 10 15 15 H 1.09006 * 109.41005 * 35.14260 * 14 13 11 16 16 C 1.52956 * 109.41569 * 154.99987 * 14 13 11 17 17 C 1.53233 * 109.40343 * 183.70554 * 16 14 13 18 18 C 1.51263 * 108.53913 * 305.37531 * 17 16 14 19 19 C 1.37881 * 120.85020 * 231.32619 * 18 17 16 20 20 N 1.31506 * 119.99877 * 348.93311 * 19 18 17 21 21 Si 1.86804 * 119.99987 * 168.93020 * 19 18 17 22 22 H 1.48506 * 109.47091 * 354.65746 * 21 19 18 23 23 H 1.48492 * 109.47232 * 114.65992 * 21 19 18 24 24 H 1.48506 * 109.46948 * 234.66162 * 21 19 18 25 25 C 1.51272 * 118.30094 * 51.34464 * 18 17 16 26 26 C 1.52963 * 109.41557 * 275.35698 * 14 13 11 27 27 H 1.08998 * 109.47571 * 59.99680 * 1 2 3 28 28 H 1.09003 * 109.47333 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46687 * 299.99856 * 1 2 3 30 30 H 1.08000 * 119.94781 * 359.94915 * 4 3 2 31 31 H 1.08001 * 119.78449 * 180.02562 * 5 4 3 32 32 H 1.07997 * 119.83975 * 180.02562 * 6 5 4 33 33 H 1.08003 * 120.05905 * 180.29827 * 7 6 5 34 34 H 1.07996 * 120.00458 * 179.72983 * 9 8 7 35 35 H 1.07996 * 120.00481 * 0.27795 * 10 9 8 36 36 H 0.97008 * 120.00071 * 0.02562 * 13 11 10 37 37 H 1.08996 * 109.48298 * 303.68467 * 16 14 13 38 38 H 1.09003 * 109.48074 * 63.71987 * 16 14 13 39 39 H 1.08999 * 109.62437 * 65.09224 * 17 16 14 40 40 H 1.08998 * 109.62191 * 185.66009 * 17 16 14 41 41 H 0.97004 * 120.00112 * 180.02562 * 20 19 18 42 42 H 1.09003 * 109.62122 * 68.37060 * 25 18 17 43 43 H 1.09001 * 109.62319 * 188.93901 * 25 18 17 44 44 H 1.08999 * 109.47950 * 296.27398 * 26 14 13 45 45 H 1.09004 * 109.47918 * 56.31465 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2933 2.3735 0.0005 5 6 1.9215 3.6037 0.0011 6 6 3.3049 3.6855 0.0005 7 6 4.0692 2.5396 0.0060 8 6 3.4467 1.2864 -0.0004 9 6 4.2550 0.0592 -0.0012 10 6 5.6027 0.1387 -0.0014 11 6 6.4071 -1.0827 -0.0027 12 8 5.8616 -2.1708 -0.0033 13 7 7.7526 -1.0034 -0.0024 14 6 8.5585 -2.2268 -0.0032 15 1 8.0558 -2.9913 -0.5957 16 6 9.9301 -1.9316 -0.6123 17 6 10.7391 -3.2302 -0.6981 18 6 10.7898 -3.8570 0.6776 19 6 11.9909 -4.2386 1.2369 20 7 13.0804 -4.2640 0.5008 21 14 12.0707 -4.7192 3.0403 22 1 10.7484 -4.4843 3.6741 23 1 12.4259 -6.1565 3.1542 24 1 13.1011 -3.8988 3.7261 25 6 9.4890 -4.0550 1.4239 26 6 8.7254 -2.7266 1.4328 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2147 2.3190 0.0001 31 1 1.3307 4.5078 0.0019 32 1 3.7860 4.6524 0.0014 33 1 5.1470 2.6082 0.0105 34 1 3.7710 -0.9062 -0.0018 35 1 6.0868 1.1041 0.0036 36 1 8.1873 -0.1362 -0.0008 37 1 9.8022 -1.5163 -1.6119 38 1 10.4595 -1.2141 0.0146 39 1 10.2578 -3.9159 -1.3954 40 1 11.7511 -3.0093 -1.0373 41 1 13.9254 -4.5328 0.8942 42 1 8.8920 -4.8172 0.9230 43 1 9.6979 -4.3641 2.4480 44 1 9.2833 -1.9904 2.0114 45 1 7.7436 -2.8747 1.8826 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180530647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:21 Heat of formation + Delta-G solvation = -45.883980 kcal Electronic energy + Delta-G solvation = -25071.136468 eV Core-core repulsion = 21439.538548 eV Total energy + Delta-G solvation = -3631.597920 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.54181 -39.38625 -37.81028 -36.72678 -34.18102 -33.60265 -31.57398 -30.54819 -29.98442 -29.60886 -27.67076 -27.15989 -24.44859 -22.61279 -22.20476 -21.48560 -20.82958 -19.63039 -18.98878 -18.52018 -17.25482 -16.28067 -16.22382 -16.11575 -15.71991 -15.35069 -14.83952 -14.47897 -14.29229 -14.12489 -13.89230 -13.47356 -13.22678 -13.08953 -12.66987 -12.48087 -12.42478 -12.27435 -12.08568 -11.63640 -11.52321 -11.43808 -11.26299 -10.95470 -10.79539 -10.71245 -10.48226 -10.11411 -9.96426 -9.58038 -9.36235 -9.00397 -8.96899 -8.79438 -8.39635 -8.27528 -8.08211 -6.09004 -3.97050 0.38652 1.06184 1.91853 2.87670 3.28850 3.38916 3.39959 3.40842 3.66440 3.76240 4.37577 4.40343 4.41841 4.64818 4.69930 4.76859 4.92761 4.96476 5.11486 5.12386 5.17180 5.19592 5.36952 5.64903 5.73236 5.79636 5.91709 5.95601 6.12398 6.25838 6.29204 6.37213 6.48662 6.53034 6.56377 6.77637 6.84435 6.95291 7.00656 7.01970 7.20378 7.33118 7.50559 7.66324 7.77403 7.81245 8.03645 8.41723 8.67735 8.98870 9.57821 11.00572 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.026361 B = 0.002302 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.937853 B =12162.221738 C =12518.350504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.148 3.852 4 C -0.213 4.213 5 C -0.073 4.073 6 C -0.159 4.159 7 C -0.066 4.066 8 C -0.100 4.100 9 C -0.021 4.021 10 C -0.208 4.208 11 C 0.540 3.460 12 O -0.549 6.549 13 N -0.719 5.719 14 C 0.154 3.846 15 H 0.078 0.922 16 C -0.115 4.115 17 C 0.014 3.986 18 C -0.487 4.487 19 C 0.076 3.924 20 N -0.888 5.888 21 Si 0.878 3.122 22 H -0.255 1.255 23 H -0.283 1.283 24 H -0.286 1.286 25 C -0.023 4.023 26 C -0.113 4.113 27 H 0.056 0.944 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.125 0.875 36 H 0.394 0.606 37 H 0.036 0.964 38 H 0.053 0.947 39 H 0.007 0.993 40 H 0.057 0.943 41 H 0.263 0.737 42 H 0.019 0.981 43 H 0.041 0.959 44 H 0.049 0.951 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.575 17.271 -1.087 28.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.102 3.898 4 C -0.232 4.232 5 C -0.091 4.091 6 C -0.177 4.177 7 C -0.084 4.084 8 C -0.100 4.100 9 C -0.041 4.041 10 C -0.229 4.229 11 C 0.328 3.672 12 O -0.429 6.429 13 N -0.368 5.368 14 C 0.051 3.949 15 H 0.096 0.904 16 C -0.153 4.153 17 C -0.024 4.024 18 C -0.506 4.506 19 C -0.126 4.126 20 N -0.525 5.525 21 Si 0.706 3.294 22 H -0.180 1.180 23 H -0.209 1.209 24 H -0.213 1.213 25 C -0.061 4.061 26 C -0.152 4.152 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.148 0.852 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.143 0.857 36 H 0.227 0.773 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.025 0.975 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -22.653 16.233 -1.096 27.890 hybrid contribution 0.117 0.502 0.993 1.119 sum -22.536 16.735 -0.103 28.070 Atomic orbital electron populations 1.23125 0.78051 1.04388 1.01331 1.86085 1.21571 1.26554 1.87810 1.19205 0.91489 0.84488 0.94590 1.21190 1.00144 0.92215 1.09622 1.21065 0.94762 0.96955 0.96304 1.21013 0.93807 0.98566 1.04344 1.21333 1.00359 0.90722 0.95958 1.18424 0.89744 0.93956 1.07925 1.22137 0.93211 0.97104 0.91636 1.23002 0.94707 0.98062 1.07106 1.18237 0.82701 0.89251 0.77030 1.90806 1.72051 1.29505 1.50492 1.46314 1.05822 1.10664 1.73972 1.21051 0.91019 0.84904 0.97955 0.90396 1.21943 0.94327 1.01635 0.97414 1.19319 0.96567 0.90621 0.95859 1.20049 0.90109 1.39485 1.00982 1.24840 0.95272 0.94834 0.97699 1.69900 0.99771 1.47289 1.35554 0.86760 0.78089 0.78261 0.86309 1.18027 1.20934 1.21281 1.19932 0.95717 0.92671 0.97826 1.21904 0.98341 1.00117 0.94827 0.92514 0.87875 0.92507 0.85193 0.85645 0.85493 0.84631 0.84337 0.85722 0.77303 0.94569 0.92810 0.97468 0.92461 0.92712 0.96248 0.94061 0.93217 0.94538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.31 -3.25 9.68 -18.77 -0.18 -3.43 16 3 C 0.15 1.55 6.70 -38.64 -0.26 1.30 16 4 C -0.21 -1.72 9.03 -39.49 -0.36 -2.08 16 5 C -0.07 -0.52 10.03 -39.50 -0.40 -0.92 16 6 C -0.16 -1.21 10.02 -39.64 -0.40 -1.61 16 7 C -0.07 -0.60 9.41 -39.13 -0.37 -0.96 16 8 C -0.10 -1.12 5.88 -104.93 -0.62 -1.73 16 9 C -0.02 -0.28 9.21 -37.21 -0.34 -0.62 16 10 C -0.21 -2.72 9.41 -37.52 -0.35 -3.07 16 11 C 0.54 9.31 7.70 -13.04 -0.10 9.21 16 12 O -0.55 -11.74 15.89 5.17 0.08 -11.65 16 13 N -0.72 -11.94 5.07 -55.29 -0.28 -12.22 16 14 C 0.15 3.12 2.35 -67.97 -0.16 2.96 16 15 H 0.08 1.76 7.58 -51.93 -0.39 1.37 16 16 C -0.11 -2.37 5.40 -26.63 -0.14 -2.51 16 17 C 0.01 0.36 5.93 -27.49 -0.16 0.19 16 18 C -0.49 -12.97 5.48 -98.92 -0.54 -13.52 16 19 C 0.08 2.09 5.44 -17.82 -0.10 2.00 16 20 N -0.89 -25.61 12.82 55.43 0.71 -24.90 16 21 Si 0.88 21.05 27.95 -169.99 -4.75 16.29 16 22 H -0.26 -5.91 5.58 56.52 0.32 -5.60 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 C -0.02 -0.57 5.65 -27.49 -0.16 -0.73 16 26 C -0.11 -2.46 5.50 -26.63 -0.15 -2.61 16 27 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 30 H 0.13 0.74 6.30 -52.49 -0.33 0.41 16 31 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 32 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.14 0.99 6.17 -52.48 -0.32 0.67 16 34 H 0.14 2.07 7.10 -52.49 -0.37 1.70 16 35 H 0.13 1.21 6.07 -52.49 -0.32 0.89 16 36 H 0.39 5.24 8.58 -40.82 -0.35 4.89 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 40 H 0.06 1.54 7.19 -51.93 -0.37 1.17 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.04 1.00 4.36 -51.93 -0.23 0.77 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -32.72 364.25 -9.05 -41.77 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.51 Total: 2.21 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -3.61 Total: -13.56 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.43 Total: -37.12 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.10 Total: -15.08 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.75 Total: 16.29 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.72 -9.05 -41.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180530647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.115 kcal (2) G-P(sol) polarization free energy of solvation -32.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds