Wall clock time and date at job start Tue Mar 31 2020 11:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35691 * 116.99780 * 2 1 4 4 C 1.38603 * 120.16093 * 0.02602 * 3 2 1 5 5 C 1.38127 * 120.10707 * 179.97438 * 4 3 2 6 6 C 1.38577 * 120.43669 * 0.02562 * 5 4 3 7 7 C 1.37748 * 120.31609 * 359.68342 * 6 5 4 8 8 C 1.39925 * 119.88209 * 0.59526 * 7 6 5 9 9 C 1.46944 * 120.21400 * 179.70196 * 8 7 6 10 10 C 1.34999 * 119.99784 * 359.72303 * 9 8 7 11 11 C 1.46250 * 119.99767 * 180.02562 * 10 9 8 12 12 O 1.21720 * 120.00147 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99798 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00223 * 179.97438 * 13 11 10 15 15 H 1.09006 * 109.41005 * 35.14260 * 14 13 11 16 16 C 1.52956 * 109.41569 * 154.99987 * 14 13 11 17 17 C 1.53233 * 109.40343 * 183.70554 * 16 14 13 18 18 C 1.51263 * 108.53913 * 305.37531 * 17 16 14 19 19 C 1.37881 * 120.85020 * 231.32619 * 18 17 16 20 20 N 1.31506 * 119.99877 * 348.93311 * 19 18 17 21 21 Si 1.86804 * 119.99987 * 168.93020 * 19 18 17 22 22 H 1.48506 * 109.47091 * 354.65746 * 21 19 18 23 23 H 1.48492 * 109.47232 * 114.65992 * 21 19 18 24 24 H 1.48506 * 109.46948 * 234.66162 * 21 19 18 25 25 C 1.51272 * 118.30094 * 51.34464 * 18 17 16 26 26 C 1.52963 * 109.41557 * 275.35698 * 14 13 11 27 27 H 1.08998 * 109.47571 * 59.99680 * 1 2 3 28 28 H 1.09003 * 109.47333 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46687 * 299.99856 * 1 2 3 30 30 H 1.08000 * 119.94781 * 359.94915 * 4 3 2 31 31 H 1.08001 * 119.78449 * 180.02562 * 5 4 3 32 32 H 1.07997 * 119.83975 * 180.02562 * 6 5 4 33 33 H 1.08003 * 120.05905 * 180.29827 * 7 6 5 34 34 H 1.07996 * 120.00458 * 179.72983 * 9 8 7 35 35 H 1.07996 * 120.00481 * 0.27795 * 10 9 8 36 36 H 0.97008 * 120.00071 * 0.02562 * 13 11 10 37 37 H 1.08996 * 109.48298 * 303.68467 * 16 14 13 38 38 H 1.09003 * 109.48074 * 63.71987 * 16 14 13 39 39 H 1.08999 * 109.62437 * 65.09224 * 17 16 14 40 40 H 1.08998 * 109.62191 * 185.66009 * 17 16 14 41 41 H 0.97004 * 120.00112 * 180.02562 * 20 19 18 42 42 H 1.09003 * 109.62122 * 68.37060 * 25 18 17 43 43 H 1.09001 * 109.62319 * 188.93901 * 25 18 17 44 44 H 1.08999 * 109.47950 * 296.27398 * 26 14 13 45 45 H 1.09004 * 109.47918 * 56.31465 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 1.2933 2.3735 0.0005 5 6 1.9215 3.6037 0.0011 6 6 3.3049 3.6855 0.0005 7 6 4.0692 2.5396 0.0060 8 6 3.4467 1.2864 -0.0004 9 6 4.2550 0.0592 -0.0012 10 6 5.6027 0.1387 -0.0014 11 6 6.4071 -1.0827 -0.0027 12 8 5.8616 -2.1708 -0.0033 13 7 7.7526 -1.0034 -0.0024 14 6 8.5585 -2.2268 -0.0032 15 1 8.0558 -2.9913 -0.5957 16 6 9.9301 -1.9316 -0.6123 17 6 10.7391 -3.2302 -0.6981 18 6 10.7898 -3.8570 0.6776 19 6 11.9909 -4.2386 1.2369 20 7 13.0804 -4.2640 0.5008 21 14 12.0707 -4.7192 3.0403 22 1 10.7484 -4.4843 3.6741 23 1 12.4259 -6.1565 3.1542 24 1 13.1011 -3.8988 3.7261 25 6 9.4890 -4.0550 1.4239 26 6 8.7254 -2.7266 1.4328 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2147 2.3190 0.0001 31 1 1.3307 4.5078 0.0019 32 1 3.7860 4.6524 0.0014 33 1 5.1470 2.6082 0.0105 34 1 3.7710 -0.9062 -0.0018 35 1 6.0868 1.1041 0.0036 36 1 8.1873 -0.1362 -0.0008 37 1 9.8022 -1.5163 -1.6119 38 1 10.4595 -1.2141 0.0146 39 1 10.2578 -3.9159 -1.3954 40 1 11.7511 -3.0093 -1.0373 41 1 13.9254 -4.5328 0.8942 42 1 8.8920 -4.8172 0.9230 43 1 9.6979 -4.3641 2.4480 44 1 9.2833 -1.9904 2.0114 45 1 7.7436 -2.8747 1.8826 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180530647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:19 Heat of formation + Delta-G solvation = -65.901297 kcal Electronic energy + Delta-G solvation = -25072.004484 eV Core-core repulsion = 21439.538548 eV Total energy + Delta-G solvation = -3632.465936 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.23902 -40.78110 -38.60202 -38.31215 -35.37916 -35.05935 -33.41625 -31.50700 -31.14687 -30.86822 -29.03458 -28.07836 -25.52322 -23.95043 -23.33084 -23.05345 -22.07704 -21.30933 -20.26113 -19.21064 -18.41958 -17.83982 -17.26825 -16.85072 -16.71930 -16.44972 -16.38218 -15.80616 -15.44893 -15.34109 -14.92492 -14.62728 -14.49957 -14.39199 -14.16443 -13.99676 -13.80248 -13.46479 -13.28711 -12.91917 -12.79011 -12.68914 -12.57344 -12.19160 -12.06646 -11.93211 -11.85738 -11.82281 -11.36151 -11.27218 -11.14704 -10.77683 -10.67658 -10.46849 -9.89855 -9.61645 -8.91169 -8.18299 -6.10659 -0.43230 0.45199 1.01686 1.38144 1.43108 1.51698 2.30833 2.32175 2.36283 2.42178 2.89807 3.09194 3.63029 3.79620 3.96708 4.03173 4.14293 4.21270 4.24062 4.33397 4.36906 4.41467 4.47213 4.50312 4.65046 4.71049 4.71998 4.86223 4.96471 4.97682 5.01450 5.07391 5.14749 5.24013 5.26344 5.28326 5.43643 5.53138 5.55717 5.58192 5.60089 5.71179 5.77370 5.81410 5.81776 6.35498 6.39654 6.71470 6.93417 7.36085 7.46950 8.92447 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.026361 B = 0.002302 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.937853 B =12162.221738 C =12518.350504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.338 6.338 3 C 0.132 3.868 4 C -0.217 4.217 5 C -0.065 4.065 6 C -0.162 4.162 7 C -0.066 4.066 8 C -0.133 4.133 9 C -0.009 4.009 10 C -0.216 4.216 11 C 0.536 3.464 12 O -0.600 6.600 13 N -0.707 5.707 14 C 0.165 3.835 15 H 0.050 0.950 16 C -0.100 4.100 17 C 0.009 3.991 18 C -0.500 4.500 19 C 0.025 3.975 20 N -0.926 5.926 21 Si 0.932 3.068 22 H -0.242 1.242 23 H -0.285 1.285 24 H -0.282 1.282 25 C -0.025 4.025 26 C -0.106 4.106 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.152 0.848 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.152 0.848 34 H 0.109 0.891 35 H 0.165 0.835 36 H 0.414 0.586 37 H 0.059 0.941 38 H 0.062 0.938 39 H -0.008 1.008 40 H 0.033 0.967 41 H 0.264 0.736 42 H 0.008 0.992 43 H 0.044 0.956 44 H 0.059 0.941 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.353 20.705 -0.244 31.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.252 6.252 3 C 0.086 3.914 4 C -0.236 4.236 5 C -0.083 4.083 6 C -0.180 4.180 7 C -0.084 4.084 8 C -0.134 4.134 9 C -0.029 4.029 10 C -0.236 4.236 11 C 0.327 3.673 12 O -0.483 6.483 13 N -0.356 5.356 14 C 0.060 3.940 15 H 0.069 0.931 16 C -0.138 4.138 17 C -0.029 4.029 18 C -0.519 4.519 19 C -0.173 4.173 20 N -0.565 5.565 21 Si 0.758 3.242 22 H -0.166 1.166 23 H -0.211 1.211 24 H -0.209 1.209 25 C -0.063 4.063 26 C -0.145 4.145 27 H 0.089 0.911 28 H 0.130 0.870 29 H 0.089 0.911 30 H 0.170 0.830 31 H 0.175 0.825 32 H 0.172 0.828 33 H 0.170 0.830 34 H 0.127 0.873 35 H 0.182 0.818 36 H 0.251 0.749 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.011 0.989 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.027 0.973 43 H 0.062 0.938 44 H 0.077 0.923 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -24.441 19.711 -0.251 31.400 hybrid contribution 0.498 -0.537 0.655 0.983 sum -23.942 19.174 0.404 30.677 Atomic orbital electron populations 1.23384 0.76097 1.05513 1.02668 1.86047 1.23809 1.27360 1.87950 1.19502 0.91677 0.85258 0.94964 1.21494 1.01290 0.91736 1.09073 1.21531 0.95104 0.97690 0.93975 1.21393 0.94125 0.99178 1.03304 1.21588 1.01431 0.90239 0.95137 1.18494 0.90171 0.93834 1.10913 1.22102 0.93554 0.97156 0.90089 1.22876 0.94089 0.97561 1.09114 1.18890 0.82775 0.89957 0.75641 1.90783 1.72878 1.31779 1.52860 1.46000 1.05568 1.10338 1.73726 1.20632 0.90960 0.85888 0.96502 0.93146 1.21707 0.93702 0.99321 0.99104 1.19288 0.95869 0.92640 0.95056 1.20551 0.90937 1.38722 1.01670 1.25581 0.95136 0.95200 1.01412 1.70013 1.00336 1.49003 1.37186 0.85890 0.78629 0.77732 0.81918 1.16603 1.21091 1.20857 1.19920 0.94941 0.93950 0.97463 1.21785 0.97833 0.98894 0.95947 0.91093 0.87050 0.91121 0.83017 0.82548 0.82800 0.83027 0.87274 0.81781 0.74911 0.92205 0.91904 0.98911 0.94879 0.92711 0.97344 0.93793 0.92250 0.94703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.34 -7.16 9.68 -90.10 -0.87 -8.04 16 3 C 0.13 2.64 6.70 22.88 0.15 2.79 16 4 C -0.22 -2.94 9.03 22.33 0.20 -2.74 16 5 C -0.07 -0.69 10.03 22.32 0.22 -0.46 16 6 C -0.16 -1.84 10.02 22.23 0.22 -1.62 16 7 C -0.07 -1.02 9.41 22.56 0.21 -0.81 16 8 C -0.13 -2.85 5.88 -20.07 -0.12 -2.97 16 9 C -0.01 -0.23 9.21 23.81 0.22 -0.02 16 10 C -0.22 -5.42 9.41 23.61 0.22 -5.19 16 11 C 0.54 18.37 7.70 86.32 0.66 19.03 16 12 O -0.60 -26.44 15.89 -4.41 -0.07 -26.51 16 13 N -0.71 -22.51 5.07 -447.05 -2.27 -24.77 16 14 C 0.16 6.62 2.35 44.97 0.11 6.72 16 15 H 0.05 2.33 7.58 -2.38 -0.02 2.31 16 16 C -0.10 -4.05 5.40 30.66 0.17 -3.88 16 17 C 0.01 0.48 5.93 30.10 0.18 0.66 16 18 C -0.50 -26.89 5.48 -16.17 -0.09 -26.97 16 19 C 0.03 1.41 5.44 84.66 0.46 1.87 16 20 N -0.93 -54.50 12.82 21.45 0.28 -54.22 16 21 Si 0.93 43.25 27.95 68.60 1.92 45.16 16 22 H -0.24 -10.57 5.58 99.48 0.56 -10.02 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 C -0.02 -1.21 5.65 30.10 0.17 -1.04 16 26 C -0.11 -4.54 5.50 30.66 0.17 -4.37 16 27 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 28 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 0.56 7.66 -2.38 -0.02 0.54 16 30 H 0.15 1.26 6.30 -2.91 -0.02 1.24 16 31 H 0.16 0.66 8.06 -2.91 -0.02 0.64 16 32 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 33 H 0.15 1.69 6.17 -2.91 -0.02 1.67 16 34 H 0.11 3.49 7.10 -2.91 -0.02 3.47 16 35 H 0.16 2.68 6.07 -2.91 -0.02 2.66 16 36 H 0.41 9.88 8.58 -92.70 -0.80 9.09 16 37 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 39 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 40 H 0.03 1.82 7.19 -2.39 -0.02 1.80 16 41 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.04 2.09 4.36 -2.39 -0.01 2.08 16 44 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -73.84 364.25 3.32 -70.52 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.06 Total: 15.55 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 4.27 Total: -17.69 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -1.99 Total: -79.00 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -0.94 Total: -34.55 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.92 Total: 45.16 kcal Total: -73.84 3.32 -70.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180530647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.620 kcal (2) G-P(sol) polarization free energy of solvation -73.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds