Wall clock time and date at job start Tue Mar 31 2020 12:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47349 * 86.14283 * 3 2 1 5 5 N 1.46502 * 109.47291 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99636 * 269.99432 * 5 4 3 7 7 C 1.50697 * 109.47412 * 270.00073 * 6 5 4 8 8 H 1.07993 * 119.99948 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99731 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00473 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99796 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47266 * 89.99804 * 11 9 7 13 13 H 1.48499 * 109.47055 * 209.99862 * 11 9 7 14 14 H 1.48503 * 109.47031 * 329.99716 * 11 9 7 15 15 C 1.34773 * 120.00272 * 89.99914 * 5 4 3 16 16 O 1.21587 * 120.00087 * 179.97438 * 15 5 4 17 17 N 1.34773 * 119.99735 * 0.02562 * 15 5 4 18 18 C 1.46509 * 119.99780 * 180.02562 * 17 15 5 19 19 C 1.52997 * 109.47027 * 179.97438 * 18 17 15 20 20 C 1.52995 * 109.47085 * 179.97438 * 19 18 17 21 21 C 1.50707 * 109.47301 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 19 27 27 H 1.09002 * 109.47126 * 326.13948 * 3 2 1 28 28 H 1.08999 * 109.47068 * 206.14179 * 3 2 1 29 29 H 1.09002 * 109.47280 * 59.99759 * 4 3 2 30 30 H 1.08999 * 109.46950 * 299.99967 * 4 3 2 31 31 H 1.08996 * 109.47137 * 30.00492 * 6 5 4 32 32 H 1.09004 * 109.46832 * 150.00189 * 6 5 4 33 33 H 0.97003 * 120.00141 * 180.02562 * 10 9 7 34 34 H 0.96998 * 120.00418 * 359.97438 * 17 15 5 35 35 H 1.08992 * 109.47597 * 59.99530 * 18 17 15 36 36 H 1.08999 * 109.46361 * 299.99232 * 18 17 15 37 37 H 1.08995 * 109.47671 * 59.99445 * 19 18 17 38 38 H 1.09004 * 109.46984 * 299.99461 * 19 18 17 39 39 H 1.09005 * 109.47610 * 59.99944 * 20 19 18 40 40 H 1.09000 * 109.47256 * 299.99285 * 20 19 18 41 41 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 42 42 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 45 45 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1180 -0.0961 -1.4392 5 7 4.5830 -0.0961 -1.4391 6 6 5.3154 1.1698 -1.5244 7 6 5.5666 1.5085 -2.9712 8 1 5.2155 0.8471 -3.7494 9 6 6.2448 2.6626 -3.3013 10 7 6.6720 3.4683 -2.3537 11 14 6.5556 3.0828 -5.0948 12 1 5.4257 3.8931 -5.6163 13 1 7.8162 3.8592 -5.2100 14 1 6.6719 1.8300 -5.8837 15 6 5.2570 -1.2606 -1.3608 16 8 6.4729 -1.2606 -1.3612 17 7 4.5832 -2.4252 -1.2829 18 6 5.3158 -3.6910 -1.1972 19 6 4.3216 -4.8514 -1.1193 20 6 5.0867 -6.1733 -1.0303 21 6 4.1074 -7.3163 -0.9530 22 6 3.6580 -7.9210 -2.1120 23 6 2.7602 -8.9697 -2.0409 24 6 2.3123 -9.4141 -0.8110 25 6 2.7576 -8.8059 0.3477 26 6 3.6590 -7.7602 0.2770 27 1 2.9716 -0.8526 0.5726 28 1 2.9708 0.9234 0.4528 29 1 2.7543 0.7571 -2.0118 30 1 2.7551 -1.0188 -1.8920 31 1 4.7263 1.9622 -1.0628 32 1 6.2679 1.0743 -1.0029 33 1 7.1488 4.2805 -2.5860 34 1 3.6132 -2.4253 -1.2830 35 1 5.9418 -3.6889 -0.3049 36 1 5.9430 -3.8083 -2.0809 37 1 3.6952 -4.8538 -2.0113 38 1 3.6946 -4.7339 -0.2354 39 1 5.7133 -6.1713 -0.1384 40 1 5.7133 -6.2907 -1.9144 41 1 4.0083 -7.5741 -3.0729 42 1 2.4087 -9.4419 -2.9464 43 1 1.6112 -10.2337 -0.7556 44 1 2.4043 -9.1502 1.3085 45 1 4.0107 -7.2882 1.1825 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191195164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:04 Heat of formation + Delta-G solvation = 11.271941 kcal Electronic energy + Delta-G solvation = -24807.537396 eV Core-core repulsion = 21210.710694 eV Total energy + Delta-G solvation = -3596.826702 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.71940 -39.44725 -36.91581 -35.97874 -35.07536 -33.54890 -32.68040 -31.15220 -30.82625 -30.19623 -27.32720 -25.68364 -23.98828 -22.96786 -22.83945 -21.89668 -21.11524 -19.25976 -17.81225 -17.21516 -17.02825 -16.44289 -15.97367 -15.90847 -15.40154 -15.02455 -14.78485 -14.56778 -14.24491 -13.89204 -13.70014 -13.65608 -13.52645 -13.13820 -13.08402 -12.59284 -12.43700 -12.39626 -12.14598 -12.04172 -11.76560 -11.70105 -11.35062 -11.23200 -11.05645 -10.97740 -10.89651 -10.84238 -10.57328 -10.14926 -9.67746 -9.31630 -9.19083 -8.94681 -8.68665 -8.43175 -7.73661 -6.04492 -4.08491 1.08263 1.13115 2.73782 2.81307 3.24897 3.30839 3.37947 3.42814 3.53366 3.88272 4.01988 4.43028 4.45748 4.55510 4.61908 4.73343 4.84887 4.87233 5.02055 5.08541 5.14768 5.17382 5.24218 5.26050 5.30344 5.43407 5.49647 5.50954 5.71868 5.78263 5.81799 5.83924 6.03044 6.07287 6.10258 6.20052 6.24690 6.39240 6.73489 6.75197 6.87723 7.34413 7.49201 7.57694 7.71385 7.94422 8.23300 8.63525 8.93077 9.31908 9.57534 11.03407 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013353 B = 0.002629 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.462424 B =10648.515802 C =11869.257268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.217 3.783 3 C -0.052 4.052 4 C 0.122 3.878 5 N -0.612 5.612 6 C 0.259 3.741 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.702 3.298 16 O -0.579 6.579 17 N -0.760 5.760 18 C 0.140 3.860 19 C -0.124 4.124 20 C -0.079 4.079 21 C -0.078 4.078 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.128 4.128 25 C -0.120 4.120 26 C -0.117 4.117 27 H 0.106 0.894 28 H 0.118 0.882 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.263 0.737 34 H 0.389 0.611 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.907 -21.862 5.176 23.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.101 4.101 3 C -0.094 4.094 4 C -0.005 4.005 5 N -0.347 5.347 6 C 0.140 3.860 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.403 3.597 16 O -0.456 6.456 17 N -0.419 5.419 18 C 0.015 3.985 19 C -0.162 4.162 20 C -0.117 4.117 21 C -0.078 4.078 22 C -0.135 4.135 23 C -0.137 4.137 24 C -0.146 4.146 25 C -0.138 4.138 26 C -0.135 4.135 27 H 0.124 0.876 28 H 0.136 0.864 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.224 0.776 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.543 -21.643 5.200 23.842 hybrid contribution 0.059 0.288 -1.007 1.049 sum -8.484 -21.356 4.193 23.359 Atomic orbital electron populations 1.81205 1.13057 1.09392 1.08704 1.29149 0.95139 0.92785 0.93060 1.19949 0.81206 1.06521 1.01689 1.21185 0.82760 1.03592 0.93008 1.47523 1.04144 1.07276 1.75765 1.19250 0.92399 0.76984 0.97356 1.21457 1.36398 1.06248 0.92389 0.92460 1.24910 0.95394 0.96197 0.97552 1.69918 1.38474 1.12928 1.32066 0.86527 0.77646 0.78360 0.85053 1.20724 1.21146 1.19941 1.15921 0.85499 0.80142 0.78140 1.90908 1.11569 1.85767 1.57325 1.45342 1.09237 1.05290 1.82022 1.21075 0.93975 0.81299 1.02175 1.21766 0.98438 0.93098 1.02912 1.20532 0.96211 0.91312 1.03629 1.19931 0.97835 0.96856 0.93172 1.21113 0.97849 0.96427 0.98140 1.21161 0.97675 0.97158 0.97748 1.21146 1.00449 1.00278 0.92746 1.21156 0.97683 0.96546 0.98384 1.21098 0.97863 0.97208 0.97377 0.87632 0.86406 0.88695 0.91413 0.94748 0.93520 0.92733 0.77608 0.91855 0.91852 0.91245 0.91256 0.90447 0.90427 0.85974 0.86188 0.86326 0.86200 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.55 18.54 42.15 0.78 -5.77 16 2 C 0.22 2.62 15.43 -20.76 -0.32 2.30 16 3 C -0.05 -0.55 6.03 -29.52 -0.18 -0.73 16 4 C 0.12 1.64 5.13 -4.04 -0.02 1.62 16 5 N -0.61 -11.48 2.46 -180.80 -0.44 -11.92 16 6 C 0.26 6.23 5.16 -5.19 -0.03 6.21 16 7 C -0.53 -14.22 9.39 -34.44 -0.32 -14.55 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 11 Si 0.90 21.44 29.54 -169.99 -5.02 16.41 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.70 13.51 8.28 -86.92 -0.72 12.79 16 16 O -0.58 -14.10 15.92 5.29 0.08 -14.01 16 17 N -0.76 -10.44 5.42 -65.23 -0.35 -10.79 16 18 C 0.14 1.65 5.67 -4.04 -0.02 1.63 16 19 C -0.12 -1.06 5.31 -26.74 -0.14 -1.20 16 20 C -0.08 -0.62 5.34 -27.88 -0.15 -0.77 16 21 C -0.08 -0.66 5.13 -104.62 -0.54 -1.20 16 22 C -0.12 -0.98 9.70 -39.58 -0.38 -1.36 16 23 C -0.12 -0.94 10.05 -39.58 -0.40 -1.33 16 24 C -0.13 -0.97 10.05 -39.58 -0.40 -1.37 16 25 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 26 C -0.12 -0.96 9.70 -39.58 -0.38 -1.34 16 27 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 30 H 0.07 0.76 6.36 -51.93 -0.33 0.43 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.39 4.25 6.20 -40.82 -0.25 4.00 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 40 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 41 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 42 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 389.92 15.07 5.88 5.88 Total: -1.00 -34.14 389.92 -9.68 -43.82 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.84 Total: 0.38 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -4.50 Total: 0.99 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.72 Total: -53.47 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.08 Total: -14.01 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.14 -9.68 -43.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191195164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.095 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds