Wall clock time and date at job start Tue Mar 31 2020 12:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47349 * 86.14283 * 3 2 1 5 5 N 1.46502 * 109.47291 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99636 * 269.99432 * 5 4 3 7 7 C 1.50697 * 109.47412 * 270.00073 * 6 5 4 8 8 H 1.07993 * 119.99948 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99731 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00473 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99796 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47266 * 89.99804 * 11 9 7 13 13 H 1.48499 * 109.47055 * 209.99862 * 11 9 7 14 14 H 1.48503 * 109.47031 * 329.99716 * 11 9 7 15 15 C 1.34773 * 120.00272 * 89.99914 * 5 4 3 16 16 O 1.21587 * 120.00087 * 179.97438 * 15 5 4 17 17 N 1.34773 * 119.99735 * 0.02562 * 15 5 4 18 18 C 1.46509 * 119.99780 * 180.02562 * 17 15 5 19 19 C 1.52997 * 109.47027 * 179.97438 * 18 17 15 20 20 C 1.52995 * 109.47085 * 179.97438 * 19 18 17 21 21 C 1.50707 * 109.47301 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 90.00016 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97953 * 21 20 19 27 27 H 1.09002 * 109.47126 * 326.13948 * 3 2 1 28 28 H 1.08999 * 109.47068 * 206.14179 * 3 2 1 29 29 H 1.09002 * 109.47280 * 59.99759 * 4 3 2 30 30 H 1.08999 * 109.46950 * 299.99967 * 4 3 2 31 31 H 1.08996 * 109.47137 * 30.00492 * 6 5 4 32 32 H 1.09004 * 109.46832 * 150.00189 * 6 5 4 33 33 H 0.97003 * 120.00141 * 180.02562 * 10 9 7 34 34 H 0.96998 * 120.00418 * 359.97438 * 17 15 5 35 35 H 1.08992 * 109.47597 * 59.99530 * 18 17 15 36 36 H 1.08999 * 109.46361 * 299.99232 * 18 17 15 37 37 H 1.08995 * 109.47671 * 59.99445 * 19 18 17 38 38 H 1.09004 * 109.46984 * 299.99461 * 19 18 17 39 39 H 1.09005 * 109.47610 * 59.99944 * 20 19 18 40 40 H 1.09000 * 109.47256 * 299.99285 * 20 19 18 41 41 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 42 42 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 44 44 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 45 45 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1180 -0.0961 -1.4392 5 7 4.5830 -0.0961 -1.4391 6 6 5.3154 1.1698 -1.5244 7 6 5.5666 1.5085 -2.9712 8 1 5.2155 0.8471 -3.7494 9 6 6.2448 2.6626 -3.3013 10 7 6.6720 3.4683 -2.3537 11 14 6.5556 3.0828 -5.0948 12 1 5.4257 3.8931 -5.6163 13 1 7.8162 3.8592 -5.2100 14 1 6.6719 1.8300 -5.8837 15 6 5.2570 -1.2606 -1.3608 16 8 6.4729 -1.2606 -1.3612 17 7 4.5832 -2.4252 -1.2829 18 6 5.3158 -3.6910 -1.1972 19 6 4.3216 -4.8514 -1.1193 20 6 5.0867 -6.1733 -1.0303 21 6 4.1074 -7.3163 -0.9530 22 6 3.6580 -7.9210 -2.1120 23 6 2.7602 -8.9697 -2.0409 24 6 2.3123 -9.4141 -0.8110 25 6 2.7576 -8.8059 0.3477 26 6 3.6590 -7.7602 0.2770 27 1 2.9716 -0.8526 0.5726 28 1 2.9708 0.9234 0.4528 29 1 2.7543 0.7571 -2.0118 30 1 2.7551 -1.0188 -1.8920 31 1 4.7263 1.9622 -1.0628 32 1 6.2679 1.0743 -1.0029 33 1 7.1488 4.2805 -2.5860 34 1 3.6132 -2.4253 -1.2830 35 1 5.9418 -3.6889 -0.3049 36 1 5.9430 -3.8083 -2.0809 37 1 3.6952 -4.8538 -2.0113 38 1 3.6946 -4.7339 -0.2354 39 1 5.7133 -6.1713 -0.1384 40 1 5.7133 -6.2907 -1.9144 41 1 4.0083 -7.5741 -3.0729 42 1 2.4087 -9.4419 -2.9464 43 1 1.6112 -10.2337 -0.7556 44 1 2.4043 -9.1502 1.3085 45 1 4.0107 -7.2882 1.1825 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191195164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:03 Heat of formation + Delta-G solvation = -7.822979 kcal Electronic energy + Delta-G solvation = -24808.365414 eV Core-core repulsion = 21210.710694 eV Total energy + Delta-G solvation = -3597.654720 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.07305 -40.12325 -38.04188 -37.05173 -36.46912 -34.95617 -34.20263 -32.15132 -31.70468 -31.08827 -29.00101 -26.70182 -25.32354 -24.50068 -23.39772 -22.90787 -21.78769 -20.63755 -19.07671 -18.50872 -18.28632 -17.68747 -17.28095 -16.75818 -16.44421 -16.07794 -15.99805 -15.74896 -15.31711 -15.08949 -15.02147 -14.48443 -14.29522 -14.18251 -14.16482 -13.79955 -13.63872 -13.58639 -13.25557 -13.10533 -12.92870 -12.83455 -12.71159 -12.48406 -12.43494 -12.15358 -11.97544 -11.91522 -11.69604 -11.65215 -11.54808 -10.96279 -10.54804 -10.04672 -9.76216 -9.54191 -9.31215 -8.13812 -6.25950 0.50188 0.55903 1.41234 1.43706 1.52981 1.68683 1.83206 1.95235 2.38287 2.48132 2.88920 2.98403 3.16983 3.40565 3.77703 3.97868 4.03011 4.11656 4.21224 4.21638 4.30422 4.39813 4.40591 4.50306 4.58707 4.70016 4.78787 4.81891 4.84836 4.92786 5.03506 5.10447 5.17825 5.21526 5.28787 5.33175 5.38887 5.63785 5.65252 5.68945 5.69390 5.80246 5.88852 6.18131 6.19291 6.23788 6.59904 6.83739 7.25668 7.41031 7.84690 8.92221 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013353 B = 0.002629 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.462424 B =10648.515802 C =11869.257268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.245 3.755 3 C -0.037 4.037 4 C 0.117 3.883 5 N -0.613 5.613 6 C 0.275 3.725 7 C -0.538 4.538 8 H 0.051 0.949 9 C 0.010 3.990 10 N -0.926 5.926 11 Si 0.958 3.042 12 H -0.267 1.267 13 H -0.284 1.284 14 H -0.276 1.276 15 C 0.698 3.302 16 O -0.637 6.637 17 N -0.736 5.736 18 C 0.139 3.861 19 C -0.108 4.108 20 C -0.075 4.075 21 C -0.088 4.088 22 C -0.131 4.131 23 C -0.130 4.130 24 C -0.137 4.137 25 C -0.129 4.129 26 C -0.128 4.128 27 H 0.132 0.868 28 H 0.122 0.878 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.037 0.963 32 H 0.004 0.996 33 H 0.265 0.735 34 H 0.407 0.593 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.128 0.872 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.440 -23.246 4.986 25.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.072 4.072 3 C -0.079 4.079 4 C -0.008 4.008 5 N -0.348 5.348 6 C 0.154 3.846 7 C -0.577 4.577 8 H 0.069 0.931 9 C -0.189 4.189 10 N -0.566 5.566 11 Si 0.783 3.217 12 H -0.192 1.192 13 H -0.210 1.210 14 H -0.201 1.201 15 C 0.399 3.601 16 O -0.518 6.518 17 N -0.396 5.396 18 C 0.014 3.986 19 C -0.146 4.146 20 C -0.113 4.113 21 C -0.088 4.088 22 C -0.149 4.149 23 C -0.148 4.148 24 C -0.155 4.155 25 C -0.147 4.147 26 C -0.146 4.146 27 H 0.149 0.851 28 H 0.140 0.860 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.055 0.945 32 H 0.022 0.978 33 H 0.074 0.926 34 H 0.245 0.755 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.095 0.905 41 H 0.146 0.854 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.161 -23.069 5.015 25.701 hybrid contribution 0.532 0.645 -0.926 1.248 sum -9.628 -22.424 4.089 24.744 Atomic orbital electron populations 1.81250 1.14300 1.10957 1.09964 1.29119 0.94892 0.91394 0.91786 1.19832 0.80121 1.07969 0.99947 1.21399 0.79426 1.04839 0.95100 1.47258 1.06106 1.05659 1.75740 1.18709 0.91256 0.79316 0.95331 1.21769 1.36192 1.06082 0.93644 0.93116 1.25713 0.95293 0.96298 1.01559 1.70021 1.39235 1.13385 1.33942 0.85562 0.77849 0.78019 0.80233 1.19228 1.20983 1.20061 1.16125 0.84903 0.81274 0.77798 1.90868 1.14348 1.86731 1.59866 1.45119 1.10040 1.04162 1.80229 1.21202 0.94732 0.81365 1.01252 1.21638 0.97558 0.91756 1.03666 1.20488 0.96134 0.90772 1.03931 1.20005 0.98153 0.97192 0.93469 1.21315 0.98232 0.96855 0.98521 1.21427 0.97593 0.97142 0.98614 1.21447 1.00636 1.00702 0.92679 1.21443 0.97527 0.96414 0.99292 1.21321 0.98056 0.97541 0.97718 0.85059 0.86037 0.89502 0.88558 0.94463 0.97807 0.92602 0.75539 0.92336 0.93413 0.90810 0.90046 0.89948 0.90464 0.85371 0.84770 0.84631 0.84583 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.41 18.54 20.00 0.37 -13.04 16 2 C 0.25 5.34 15.43 89.44 1.38 6.72 16 3 C -0.04 -0.70 6.03 28.79 0.17 -0.52 16 4 C 0.12 2.94 5.13 86.38 0.44 3.38 16 5 N -0.61 -22.75 2.46 -844.21 -2.07 -24.82 16 6 C 0.28 13.52 5.16 85.63 0.44 13.96 16 7 C -0.54 -29.45 9.39 25.60 0.24 -29.21 16 8 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 9 C 0.01 0.58 5.46 84.65 0.46 1.04 16 10 N -0.93 -53.98 13.29 21.45 0.28 -53.69 16 11 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 15 C 0.70 26.70 8.28 179.06 1.48 28.18 16 16 O -0.64 -31.86 15.92 -3.99 -0.06 -31.92 16 17 N -0.74 -19.03 5.42 -478.54 -2.59 -21.62 16 18 C 0.14 3.13 5.67 86.38 0.49 3.62 16 19 C -0.11 -1.61 5.31 30.59 0.16 -1.45 16 20 C -0.08 -1.06 5.34 29.85 0.16 -0.90 16 21 C -0.09 -1.35 5.13 -19.86 -0.10 -1.45 16 22 C -0.13 -2.01 9.70 22.27 0.22 -1.79 16 23 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 24 C -0.14 -1.83 10.05 22.27 0.22 -1.61 16 25 C -0.13 -1.75 10.05 22.27 0.22 -1.52 16 26 C -0.13 -1.86 9.70 22.27 0.22 -1.65 16 27 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.09 2.38 8.07 -2.39 -0.02 2.36 16 30 H 0.10 1.87 6.36 -2.39 -0.02 1.85 16 31 H 0.04 1.79 8.07 -2.39 -0.02 1.77 16 32 H 0.00 0.22 7.42 -2.38 -0.02 0.20 16 33 H 0.27 14.63 8.31 -92.71 -0.77 13.85 16 34 H 0.41 7.65 6.20 -92.71 -0.58 7.07 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 39 H 0.08 1.08 8.09 -2.38 -0.02 1.06 16 40 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 41 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 42 H 0.13 1.39 8.06 -2.91 -0.02 1.37 16 43 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 44 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 45 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -75.72 389.92 4.80 -70.92 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.41 Total: 12.91 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 6.44 Total: 15.19 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -4.01 Total: -113.18 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.06 Total: -31.92 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -75.72 4.80 -70.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191195164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.098 kcal (2) G-P(sol) polarization free energy of solvation -75.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds