Wall clock time and date at job start Tue Mar 31 2020 12:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86811 * 119.99542 * 2 1 4 4 H 1.48503 * 109.46602 * 269.99905 * 3 2 1 5 5 H 1.48492 * 109.47338 * 29.99847 * 3 2 1 6 6 H 1.48497 * 109.46874 * 150.00069 * 3 2 1 7 7 C 1.37875 * 120.00602 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00112 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99697 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47258 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00420 * 84.99469 * 10 9 7 12 12 C 1.54270 * 110.03162 * 302.09679 * 11 10 9 13 13 C 1.54961 * 104.16191 * 95.75208 * 12 11 10 14 14 C 1.54895 * 102.77671 * 37.88526 * 13 12 11 15 15 C 1.53869 * 110.03042 * 59.31208 * 11 10 9 16 16 S 1.65597 * 119.99850 * 264.99853 * 10 9 7 17 17 O 1.42104 * 104.27822 * 26.07080 * 16 10 9 18 18 O 1.42101 * 104.28051 * 153.92311 * 16 10 9 19 19 C 1.81403 * 104.45106 * 269.99611 * 16 10 9 20 20 C 1.52999 * 109.47376 * 179.97438 * 19 16 10 21 21 C 1.54270 * 110.03173 * 292.91063 * 20 19 16 22 22 C 1.54966 * 104.15765 * 217.13598 * 21 20 19 23 23 C 1.54885 * 102.77936 * 37.88853 * 22 21 20 24 24 C 1.53873 * 110.03290 * 175.69383 * 20 19 16 25 25 H 0.96992 * 120.00144 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47575 * 59.99543 * 9 7 2 27 27 H 1.09003 * 109.47005 * 299.99557 * 9 7 2 28 28 H 1.09002 * 110.01794 * 180.70323 * 11 10 9 29 29 H 1.08997 * 110.48585 * 214.40010 * 12 11 10 30 30 H 1.09002 * 110.48442 * 337.03893 * 12 11 10 31 31 H 1.09001 * 110.71970 * 279.57802 * 13 12 11 32 32 H 1.08991 * 110.92569 * 156.29385 * 13 12 11 33 33 H 1.08997 * 110.48689 * 203.40743 * 14 13 12 34 34 H 1.09000 * 110.59637 * 80.82119 * 14 13 12 35 35 H 1.08999 * 110.03405 * 359.95371 * 15 11 10 36 36 H 1.09001 * 110.03705 * 121.33517 * 15 11 10 37 37 H 1.08995 * 109.47108 * 300.00351 * 19 16 10 38 38 H 1.08997 * 109.46623 * 60.00033 * 19 16 10 39 39 H 1.09001 * 110.01438 * 54.29942 * 20 19 16 40 40 H 1.09002 * 110.48577 * 335.78087 * 21 20 19 41 41 H 1.08999 * 110.49036 * 98.42635 * 21 20 19 42 42 H 1.08999 * 110.72018 * 279.56944 * 22 21 20 43 43 H 1.09001 * 110.92448 * 156.29773 * 22 21 20 44 44 H 1.09000 * 110.48533 * 203.40646 * 23 22 21 45 45 H 1.08995 * 110.60310 * 80.81303 * 23 22 21 46 46 H 1.08999 * 110.02607 * 238.57037 * 24 20 19 47 47 H 1.09001 * 110.03045 * 359.94883 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2513 -2.4991 0.0005 10 7 2.2033 -3.6125 0.0005 11 6 2.7635 -4.0974 1.2644 12 6 3.4874 -2.9487 1.9968 13 6 2.4286 -2.4051 2.9892 14 6 1.7090 -3.6928 3.4617 15 6 1.6330 -4.5701 2.1950 16 16 2.6463 -4.3231 -1.4281 17 8 2.4611 -3.3024 -2.3994 18 8 3.9355 -4.8608 -1.1672 19 6 1.4374 -5.6546 -1.6655 20 6 1.7433 -6.3949 -2.9690 21 6 1.4918 -5.4668 -4.1754 22 6 0.8959 -6.4035 -5.2565 23 6 -0.0048 -7.3532 -4.4284 24 6 0.7926 -7.5940 -3.1299 25 1 -0.4850 0.8400 0.0004 26 1 0.6249 -2.5571 -0.8896 27 1 0.6243 -2.5567 0.8904 28 1 3.4580 -4.9159 1.0750 29 1 4.3560 -3.3273 2.5354 30 1 3.7835 -2.1729 1.2907 31 1 1.7321 -1.7372 2.4824 32 1 2.9054 -1.8990 3.8285 33 1 0.7081 -3.4591 3.8245 34 1 2.2881 -4.1928 4.2380 35 1 0.6675 -4.4380 1.7067 36 1 1.7784 -5.6182 2.4567 37 1 1.4954 -6.3513 -0.8293 38 1 0.4347 -5.2302 -1.7158 39 1 2.7785 -6.7363 -2.9701 40 1 0.7788 -4.6851 -3.9132 41 1 2.4281 -5.0297 -4.5223 42 1 1.6849 -6.9614 -5.7608 43 1 0.3032 -5.8393 -5.9767 44 1 -0.1601 -8.2918 -4.9603 45 1 -0.9606 -6.8787 -4.2066 46 1 1.3664 -8.5173 -3.2098 47 1 0.1138 -7.6491 -2.2788 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191514876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:35 Heat of formation + Delta-G solvation = -95.728172 kcal Electronic energy + Delta-G solvation = -26489.473673 eV Core-core repulsion = 22991.158297 eV Total energy + Delta-G solvation = -3498.315375 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -38.40607 -38.22615 -36.43276 -35.20733 -33.72177 -32.20548 -31.50766 -28.74837 -28.25949 -27.86143 -25.93852 -25.30045 -22.51953 -20.78537 -20.11219 -19.95866 -19.44901 -18.00476 -17.11731 -16.69689 -16.27178 -15.49351 -15.29259 -14.94339 -14.57587 -14.56745 -14.32748 -13.70291 -13.37422 -13.10576 -12.88251 -12.45224 -12.28401 -11.90998 -11.84751 -11.63020 -11.47219 -11.41158 -11.21311 -11.16864 -11.03761 -10.95392 -10.86217 -10.71475 -10.66645 -10.59418 -10.56493 -10.47803 -10.32838 -10.21870 -9.99978 -9.82910 -9.66094 -9.34620 -8.38415 -7.94739 -6.01465 -4.02201 0.88931 3.35129 3.38728 3.41437 3.46298 4.35874 4.42796 4.47603 4.50407 4.66539 4.74410 5.07841 5.14018 5.23952 5.28400 5.33470 5.35084 5.40072 5.42316 5.56121 5.60917 5.66831 5.77937 5.82490 5.84396 5.89231 6.01793 6.04549 6.13516 6.14500 6.17091 6.18527 6.27013 6.30830 6.36142 6.38621 6.50367 6.74809 6.85084 7.06360 7.18400 7.41163 7.48769 7.69991 7.98160 8.27837 8.98478 9.60677 11.07147 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014006 B = 0.005239 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.597420 B = 5342.906436 C = 6421.701135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.256 3.744 10 N -0.980 5.980 11 C 0.151 3.849 12 C -0.127 4.127 13 C -0.124 4.124 14 C -0.120 4.120 15 C -0.136 4.136 16 S 2.599 3.401 17 O -0.934 6.934 18 O -0.977 6.977 19 C -0.636 4.636 20 C -0.080 4.080 21 C -0.143 4.143 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.113 4.113 25 H 0.262 0.738 26 H 0.034 0.966 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.065 0.935 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.147 -14.319 -1.295 14.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.134 3.866 10 N -0.818 5.818 11 C 0.044 3.956 12 C -0.166 4.166 13 C -0.162 4.162 14 C -0.157 4.157 15 C -0.176 4.176 16 S 2.692 3.308 17 O -0.924 6.924 18 O -0.968 6.968 19 C -0.763 4.763 20 C -0.100 4.100 21 C -0.180 4.180 22 C -0.160 4.160 23 C -0.164 4.164 24 C -0.151 4.151 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.142 0.858 38 H 0.149 0.851 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.689 -13.950 -1.842 14.088 hybrid contribution -0.253 0.571 0.340 0.711 sum 0.436 -13.379 -1.502 13.470 Atomic orbital electron populations 1.69909 1.05880 1.26837 1.51135 1.24879 0.94785 0.98946 0.95346 0.86630 0.79895 0.83500 0.78253 1.20617 1.21362 1.19793 1.21462 0.93469 0.90301 1.49731 0.91890 1.19065 0.87152 0.82301 0.98096 1.57579 1.59730 1.45115 1.19406 1.21310 0.93826 0.96288 0.84178 1.22706 0.96792 0.98506 0.98623 1.22596 0.98736 0.97045 0.97776 1.22288 1.00129 0.96818 0.96501 1.22601 1.00089 0.98358 0.96532 1.05281 0.75624 0.75458 0.74449 1.93628 1.86334 1.52506 1.59943 1.93508 1.36480 1.81896 1.84879 1.30966 1.20366 1.19651 1.05278 1.21479 1.00541 0.96042 0.91892 1.22796 1.02660 0.97922 0.94643 1.22477 0.98874 0.97243 0.97366 1.22380 0.98797 0.99375 0.95818 1.22183 0.97709 0.96998 0.98253 0.92885 0.94843 0.94191 0.89810 0.92858 0.88918 0.88338 0.93140 0.92308 0.92752 0.90702 0.92459 0.85832 0.85125 0.90122 0.89738 0.90682 0.91502 0.91237 0.91767 0.91429 0.91626 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.33 13.29 55.43 0.74 -24.59 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -13.48 6.89 -34.44 -0.24 -13.71 16 8 H 0.06 1.70 6.06 -52.48 -0.32 1.38 16 9 C 0.26 6.01 4.02 -5.20 -0.02 5.99 16 10 N -0.98 -19.44 2.60 -107.39 -0.28 -19.72 16 11 C 0.15 2.65 3.29 -66.81 -0.22 2.43 16 12 C -0.13 -2.32 5.84 -25.03 -0.15 -2.47 16 13 C -0.12 -2.19 6.35 -24.70 -0.16 -2.35 16 14 C -0.12 -1.79 6.83 -25.07 -0.17 -1.96 16 15 C -0.14 -2.06 6.03 -25.62 -0.15 -2.21 16 16 S 2.60 49.15 5.16 -107.50 -0.55 48.59 16 17 O -0.93 -21.17 15.87 -57.54 -0.91 -22.08 16 18 O -0.98 -19.95 16.58 -57.54 -0.95 -20.90 16 19 C -0.64 -8.86 5.28 37.16 0.20 -8.66 16 20 C -0.08 -1.03 2.93 -89.50 -0.26 -1.29 16 21 C -0.14 -1.93 5.11 -25.03 -0.13 -2.06 16 22 C -0.12 -1.31 6.91 -24.70 -0.17 -1.48 16 23 C -0.13 -1.24 6.83 -25.07 -0.17 -1.41 16 24 C -0.11 -1.19 6.46 -25.61 -0.17 -1.35 16 25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.03 0.84 7.61 -51.93 -0.39 0.45 16 27 H 0.04 0.95 5.87 -51.93 -0.30 0.65 16 28 H 0.08 1.38 6.90 -51.93 -0.36 1.02 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.96 5.43 -51.93 -0.28 1.68 16 31 H 0.10 2.08 5.76 -51.93 -0.30 1.79 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.18 6.88 -51.93 -0.36 0.82 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.13 1.75 8.02 -51.93 -0.42 1.33 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.24 7.63 -51.93 -0.40 0.85 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.69 7.67 -51.93 -0.40 0.29 16 LS Contribution 364.57 15.07 5.49 5.49 Total: -1.00 -31.05 364.57 -11.55 -42.60 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -8.16 Total: 3.08 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: -1.91 Total: -28.94 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.46 Total: -44.31 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -1.87 Total: -42.98 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 49.15 SS G_CDS: -0.55 Total: 48.59 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.05 -11.55 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191514876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.124 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds