Wall clock time and date at job start Tue Mar 31 2020 12:08:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86811 * 119.99542 * 2 1
4 4 H 1.48503 * 109.46602 * 269.99905 * 3 2 1
5 5 H 1.48492 * 109.47338 * 29.99847 * 3 2 1
6 6 H 1.48497 * 109.46874 * 150.00069 * 3 2 1
7 7 C 1.37875 * 120.00602 * 179.97438 * 2 1 3
8 8 H 1.08003 * 120.00112 * 179.97438 * 7 2 1
9 9 C 1.50698 * 119.99697 * 0.02562 * 7 2 1
10 10 N 1.46496 * 109.47258 * 179.97438 * 9 7 2
11 11 C 1.46501 * 120.00420 * 84.99469 * 10 9 7
12 12 C 1.54270 * 110.03162 * 302.09679 * 11 10 9
13 13 C 1.54961 * 104.16191 * 95.75208 * 12 11 10
14 14 C 1.54895 * 102.77671 * 37.88526 * 13 12 11
15 15 C 1.53869 * 110.03042 * 59.31208 * 11 10 9
16 16 S 1.65597 * 119.99850 * 264.99853 * 10 9 7
17 17 O 1.42104 * 104.27822 * 26.07080 * 16 10 9
18 18 O 1.42101 * 104.28051 * 153.92311 * 16 10 9
19 19 C 1.81403 * 104.45106 * 269.99611 * 16 10 9
20 20 C 1.52999 * 109.47376 * 179.97438 * 19 16 10
21 21 C 1.54270 * 110.03173 * 292.91063 * 20 19 16
22 22 C 1.54966 * 104.15765 * 217.13598 * 21 20 19
23 23 C 1.54885 * 102.77936 * 37.88853 * 22 21 20
24 24 C 1.53873 * 110.03290 * 175.69383 * 20 19 16
25 25 H 0.96992 * 120.00144 * 359.97438 * 1 2 3
26 26 H 1.09000 * 109.47575 * 59.99543 * 9 7 2
27 27 H 1.09003 * 109.47005 * 299.99557 * 9 7 2
28 28 H 1.09002 * 110.01794 * 180.70323 * 11 10 9
29 29 H 1.08997 * 110.48585 * 214.40010 * 12 11 10
30 30 H 1.09002 * 110.48442 * 337.03893 * 12 11 10
31 31 H 1.09001 * 110.71970 * 279.57802 * 13 12 11
32 32 H 1.08991 * 110.92569 * 156.29385 * 13 12 11
33 33 H 1.08997 * 110.48689 * 203.40743 * 14 13 12
34 34 H 1.09000 * 110.59637 * 80.82119 * 14 13 12
35 35 H 1.08999 * 110.03405 * 359.95371 * 15 11 10
36 36 H 1.09001 * 110.03705 * 121.33517 * 15 11 10
37 37 H 1.08995 * 109.47108 * 300.00351 * 19 16 10
38 38 H 1.08997 * 109.46623 * 60.00033 * 19 16 10
39 39 H 1.09001 * 110.01438 * 54.29942 * 20 19 16
40 40 H 1.09002 * 110.48577 * 335.78087 * 21 20 19
41 41 H 1.08999 * 110.49036 * 98.42635 * 21 20 19
42 42 H 1.08999 * 110.72018 * 279.56944 * 22 21 20
43 43 H 1.09001 * 110.92448 * 156.29773 * 22 21 20
44 44 H 1.09000 * 110.48533 * 203.40646 * 23 22 21
45 45 H 1.08995 * 110.60310 * 80.81303 * 23 22 21
46 46 H 1.08999 * 110.02607 * 238.57037 * 24 20 19
47 47 H 1.09001 * 110.03045 * 359.94883 * 24 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6179 0.0000
4 1 2.4965 2.0465 -1.4001
5 1 1.4465 2.6528 0.7000
6 1 3.5466 1.4404 0.7000
7 6 2.0047 -1.1940 0.0005
8 1 3.0847 -1.1939 0.0001
9 6 1.2513 -2.4991 0.0005
10 7 2.2033 -3.6125 0.0005
11 6 2.7635 -4.0974 1.2644
12 6 3.4874 -2.9487 1.9968
13 6 2.4286 -2.4051 2.9892
14 6 1.7090 -3.6928 3.4617
15 6 1.6330 -4.5701 2.1950
16 16 2.6463 -4.3231 -1.4281
17 8 2.4611 -3.3024 -2.3994
18 8 3.9355 -4.8608 -1.1672
19 6 1.4374 -5.6546 -1.6655
20 6 1.7433 -6.3949 -2.9690
21 6 1.4918 -5.4668 -4.1754
22 6 0.8959 -6.4035 -5.2565
23 6 -0.0048 -7.3532 -4.4284
24 6 0.7926 -7.5940 -3.1299
25 1 -0.4850 0.8400 0.0004
26 1 0.6249 -2.5571 -0.8896
27 1 0.6243 -2.5567 0.8904
28 1 3.4580 -4.9159 1.0750
29 1 4.3560 -3.3273 2.5354
30 1 3.7835 -2.1729 1.2907
31 1 1.7321 -1.7372 2.4824
32 1 2.9054 -1.8990 3.8285
33 1 0.7081 -3.4591 3.8245
34 1 2.2881 -4.1928 4.2380
35 1 0.6675 -4.4380 1.7067
36 1 1.7784 -5.6182 2.4567
37 1 1.4954 -6.3513 -0.8293
38 1 0.4347 -5.2302 -1.7158
39 1 2.7785 -6.7363 -2.9701
40 1 0.7788 -4.6851 -3.9132
41 1 2.4281 -5.0297 -4.5223
42 1 1.6849 -6.9614 -5.7608
43 1 0.3032 -5.8393 -5.9767
44 1 -0.1601 -8.2918 -4.9603
45 1 -0.9606 -6.8787 -4.2066
46 1 1.3664 -8.5173 -3.2098
47 1 0.1138 -7.6491 -2.2788
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001191514876.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:08:35
Heat of formation + Delta-G solvation = -95.728172 kcal
Electronic energy + Delta-G solvation = -26489.473673 eV
Core-core repulsion = 22991.158297 eV
Total energy + Delta-G solvation = -3498.315375 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.166 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-38.40607 -38.22615 -36.43276 -35.20733 -33.72177 -32.20548 -31.50766 -28.74837
-28.25949 -27.86143 -25.93852 -25.30045 -22.51953 -20.78537 -20.11219 -19.95866
-19.44901 -18.00476 -17.11731 -16.69689 -16.27178 -15.49351 -15.29259 -14.94339
-14.57587 -14.56745 -14.32748 -13.70291 -13.37422 -13.10576 -12.88251 -12.45224
-12.28401 -11.90998 -11.84751 -11.63020 -11.47219 -11.41158 -11.21311 -11.16864
-11.03761 -10.95392 -10.86217 -10.71475 -10.66645 -10.59418 -10.56493 -10.47803
-10.32838 -10.21870 -9.99978 -9.82910 -9.66094 -9.34620 -8.38415 -7.94739
-6.01465 -4.02201 0.88931 3.35129 3.38728 3.41437 3.46298 4.35874
4.42796 4.47603 4.50407 4.66539 4.74410 5.07841 5.14018 5.23952
5.28400 5.33470 5.35084 5.40072 5.42316 5.56121 5.60917 5.66831
5.77937 5.82490 5.84396 5.89231 6.01793 6.04549 6.13516 6.14500
6.17091 6.18527 6.27013 6.30830 6.36142 6.38621 6.50367 6.74809
6.85084 7.06360 7.18400 7.41163 7.48769 7.69991 7.98160 8.27837
8.98478 9.60677 11.07147
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.014006 B = 0.005239 C = 0.004359
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1998.597420 B = 5342.906436 C = 6421.701135
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.062 3.938
3 Si 0.889 3.111
4 H -0.280 1.280
5 H -0.288 1.288
6 H -0.273 1.273
7 C -0.510 4.510
8 H 0.063 0.937
9 C 0.256 3.744
10 N -0.980 5.980
11 C 0.151 3.849
12 C -0.127 4.127
13 C -0.124 4.124
14 C -0.120 4.120
15 C -0.136 4.136
16 S 2.599 3.401
17 O -0.934 6.934
18 O -0.977 6.977
19 C -0.636 4.636
20 C -0.080 4.080
21 C -0.143 4.143
22 C -0.122 4.122
23 C -0.126 4.126
24 C -0.113 4.113
25 H 0.262 0.738
26 H 0.034 0.966
27 H 0.040 0.960
28 H 0.084 0.916
29 H 0.053 0.947
30 H 0.092 0.908
31 H 0.098 0.902
32 H 0.050 0.950
33 H 0.058 0.942
34 H 0.054 0.946
35 H 0.074 0.926
36 H 0.057 0.943
37 H 0.123 0.877
38 H 0.130 0.870
39 H 0.080 0.920
40 H 0.084 0.916
41 H 0.074 0.926
42 H 0.066 0.934
43 H 0.069 0.931
44 H 0.064 0.936
45 H 0.067 0.933
46 H 0.065 0.935
47 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.147 -14.319 -1.295 14.378
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.538 5.538
2 C -0.140 4.140
3 Si 0.717 3.283
4 H -0.206 1.206
5 H -0.214 1.214
6 H -0.198 1.198
7 C -0.550 4.550
8 H 0.081 0.919
9 C 0.134 3.866
10 N -0.818 5.818
11 C 0.044 3.956
12 C -0.166 4.166
13 C -0.162 4.162
14 C -0.157 4.157
15 C -0.176 4.176
16 S 2.692 3.308
17 O -0.924 6.924
18 O -0.968 6.968
19 C -0.763 4.763
20 C -0.100 4.100
21 C -0.180 4.180
22 C -0.160 4.160
23 C -0.164 4.164
24 C -0.151 4.151
25 H 0.071 0.929
26 H 0.052 0.948
27 H 0.058 0.942
28 H 0.102 0.898
29 H 0.071 0.929
30 H 0.111 0.889
31 H 0.117 0.883
32 H 0.069 0.931
33 H 0.077 0.923
34 H 0.072 0.928
35 H 0.093 0.907
36 H 0.075 0.925
37 H 0.142 0.858
38 H 0.149 0.851
39 H 0.099 0.901
40 H 0.103 0.897
41 H 0.093 0.907
42 H 0.085 0.915
43 H 0.088 0.912
44 H 0.082 0.918
45 H 0.086 0.914
46 H 0.084 0.916
47 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 0.689 -13.950 -1.842 14.088
hybrid contribution -0.253 0.571 0.340 0.711
sum 0.436 -13.379 -1.502 13.470
Atomic orbital electron populations
1.69909 1.05880 1.26837 1.51135 1.24879 0.94785 0.98946 0.95346
0.86630 0.79895 0.83500 0.78253 1.20617 1.21362 1.19793 1.21462
0.93469 0.90301 1.49731 0.91890 1.19065 0.87152 0.82301 0.98096
1.57579 1.59730 1.45115 1.19406 1.21310 0.93826 0.96288 0.84178
1.22706 0.96792 0.98506 0.98623 1.22596 0.98736 0.97045 0.97776
1.22288 1.00129 0.96818 0.96501 1.22601 1.00089 0.98358 0.96532
1.05281 0.75624 0.75458 0.74449 1.93628 1.86334 1.52506 1.59943
1.93508 1.36480 1.81896 1.84879 1.30966 1.20366 1.19651 1.05278
1.21479 1.00541 0.96042 0.91892 1.22796 1.02660 0.97922 0.94643
1.22477 0.98874 0.97243 0.97366 1.22380 0.98797 0.99375 0.95818
1.22183 0.97709 0.96998 0.98253 0.92885 0.94843 0.94191 0.89810
0.92858 0.88918 0.88338 0.93140 0.92308 0.92752 0.90702 0.92459
0.85832 0.85125 0.90122 0.89738 0.90682 0.91502 0.91237 0.91767
0.91429 0.91626 0.91275
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -25.33 13.29 55.43 0.74 -24.59 16
2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16
3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16
4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16
5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16
7 C -0.51 -13.48 6.89 -34.44 -0.24 -13.71 16
8 H 0.06 1.70 6.06 -52.48 -0.32 1.38 16
9 C 0.26 6.01 4.02 -5.20 -0.02 5.99 16
10 N -0.98 -19.44 2.60 -107.39 -0.28 -19.72 16
11 C 0.15 2.65 3.29 -66.81 -0.22 2.43 16
12 C -0.13 -2.32 5.84 -25.03 -0.15 -2.47 16
13 C -0.12 -2.19 6.35 -24.70 -0.16 -2.35 16
14 C -0.12 -1.79 6.83 -25.07 -0.17 -1.96 16
15 C -0.14 -2.06 6.03 -25.62 -0.15 -2.21 16
16 S 2.60 49.15 5.16 -107.50 -0.55 48.59 16
17 O -0.93 -21.17 15.87 -57.54 -0.91 -22.08 16
18 O -0.98 -19.95 16.58 -57.54 -0.95 -20.90 16
19 C -0.64 -8.86 5.28 37.16 0.20 -8.66 16
20 C -0.08 -1.03 2.93 -89.50 -0.26 -1.29 16
21 C -0.14 -1.93 5.11 -25.03 -0.13 -2.06 16
22 C -0.12 -1.31 6.91 -24.70 -0.17 -1.48 16
23 C -0.13 -1.24 6.83 -25.07 -0.17 -1.41 16
24 C -0.11 -1.19 6.46 -25.61 -0.17 -1.35 16
25 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16
26 H 0.03 0.84 7.61 -51.93 -0.39 0.45 16
27 H 0.04 0.95 5.87 -51.93 -0.30 0.65 16
28 H 0.08 1.38 6.90 -51.93 -0.36 1.02 16
29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16
30 H 0.09 1.96 5.43 -51.93 -0.28 1.68 16
31 H 0.10 2.08 5.76 -51.93 -0.30 1.79 16
32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16
34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
35 H 0.07 1.18 6.88 -51.93 -0.36 0.82 16
36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16
37 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16
38 H 0.13 1.75 8.02 -51.93 -0.42 1.33 16
39 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16
40 H 0.08 1.24 7.63 -51.93 -0.40 0.85 16
41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16
42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
47 H 0.07 0.69 7.67 -51.93 -0.40 0.29 16
LS Contribution 364.57 15.07 5.49 5.49
Total: -1.00 -31.05 364.57 -11.55 -42.60
By element:
Atomic # 1 Polarization: 11.24 SS G_CDS: -8.16 Total: 3.08 kcal
Atomic # 6 Polarization: -27.04 SS G_CDS: -1.91 Total: -28.94 kcal
Atomic # 7 Polarization: -44.77 SS G_CDS: 0.46 Total: -44.31 kcal
Atomic # 8 Polarization: -41.11 SS G_CDS: -1.87 Total: -42.98 kcal
Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal
Atomic # 16 Polarization: 49.15 SS G_CDS: -0.55 Total: 48.59 kcal
Total LS contribution 5.49 Total: 5.49 kcal
Total: -31.05 -11.55 -42.60 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001191514876.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.124 kcal
(2) G-P(sol) polarization free energy of solvation -31.050 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.174 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.554 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.728 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds