Wall clock time and date at job start Tue Mar 31 2020 12:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86811 * 119.99542 * 2 1 4 4 H 1.48503 * 109.46602 * 269.99905 * 3 2 1 5 5 H 1.48492 * 109.47338 * 29.99847 * 3 2 1 6 6 H 1.48497 * 109.46874 * 150.00069 * 3 2 1 7 7 C 1.37875 * 120.00602 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00112 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99697 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47258 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00420 * 84.99469 * 10 9 7 12 12 C 1.54270 * 110.03162 * 302.09679 * 11 10 9 13 13 C 1.54961 * 104.16191 * 95.75208 * 12 11 10 14 14 C 1.54895 * 102.77671 * 37.88526 * 13 12 11 15 15 C 1.53869 * 110.03042 * 59.31208 * 11 10 9 16 16 S 1.65597 * 119.99850 * 264.99853 * 10 9 7 17 17 O 1.42104 * 104.27822 * 26.07080 * 16 10 9 18 18 O 1.42101 * 104.28051 * 153.92311 * 16 10 9 19 19 C 1.81403 * 104.45106 * 269.99611 * 16 10 9 20 20 C 1.52999 * 109.47376 * 179.97438 * 19 16 10 21 21 C 1.54270 * 110.03173 * 292.91063 * 20 19 16 22 22 C 1.54966 * 104.15765 * 217.13598 * 21 20 19 23 23 C 1.54885 * 102.77936 * 37.88853 * 22 21 20 24 24 C 1.53873 * 110.03290 * 175.69383 * 20 19 16 25 25 H 0.96992 * 120.00144 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47575 * 59.99543 * 9 7 2 27 27 H 1.09003 * 109.47005 * 299.99557 * 9 7 2 28 28 H 1.09002 * 110.01794 * 180.70323 * 11 10 9 29 29 H 1.08997 * 110.48585 * 214.40010 * 12 11 10 30 30 H 1.09002 * 110.48442 * 337.03893 * 12 11 10 31 31 H 1.09001 * 110.71970 * 279.57802 * 13 12 11 32 32 H 1.08991 * 110.92569 * 156.29385 * 13 12 11 33 33 H 1.08997 * 110.48689 * 203.40743 * 14 13 12 34 34 H 1.09000 * 110.59637 * 80.82119 * 14 13 12 35 35 H 1.08999 * 110.03405 * 359.95371 * 15 11 10 36 36 H 1.09001 * 110.03705 * 121.33517 * 15 11 10 37 37 H 1.08995 * 109.47108 * 300.00351 * 19 16 10 38 38 H 1.08997 * 109.46623 * 60.00033 * 19 16 10 39 39 H 1.09001 * 110.01438 * 54.29942 * 20 19 16 40 40 H 1.09002 * 110.48577 * 335.78087 * 21 20 19 41 41 H 1.08999 * 110.49036 * 98.42635 * 21 20 19 42 42 H 1.08999 * 110.72018 * 279.56944 * 22 21 20 43 43 H 1.09001 * 110.92448 * 156.29773 * 22 21 20 44 44 H 1.09000 * 110.48533 * 203.40646 * 23 22 21 45 45 H 1.08995 * 110.60310 * 80.81303 * 23 22 21 46 46 H 1.08999 * 110.02607 * 238.57037 * 24 20 19 47 47 H 1.09001 * 110.03045 * 359.94883 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2513 -2.4991 0.0005 10 7 2.2033 -3.6125 0.0005 11 6 2.7635 -4.0974 1.2644 12 6 3.4874 -2.9487 1.9968 13 6 2.4286 -2.4051 2.9892 14 6 1.7090 -3.6928 3.4617 15 6 1.6330 -4.5701 2.1950 16 16 2.6463 -4.3231 -1.4281 17 8 2.4611 -3.3024 -2.3994 18 8 3.9355 -4.8608 -1.1672 19 6 1.4374 -5.6546 -1.6655 20 6 1.7433 -6.3949 -2.9690 21 6 1.4918 -5.4668 -4.1754 22 6 0.8959 -6.4035 -5.2565 23 6 -0.0048 -7.3532 -4.4284 24 6 0.7926 -7.5940 -3.1299 25 1 -0.4850 0.8400 0.0004 26 1 0.6249 -2.5571 -0.8896 27 1 0.6243 -2.5567 0.8904 28 1 3.4580 -4.9159 1.0750 29 1 4.3560 -3.3273 2.5354 30 1 3.7835 -2.1729 1.2907 31 1 1.7321 -1.7372 2.4824 32 1 2.9054 -1.8990 3.8285 33 1 0.7081 -3.4591 3.8245 34 1 2.2881 -4.1928 4.2380 35 1 0.6675 -4.4380 1.7067 36 1 1.7784 -5.6182 2.4567 37 1 1.4954 -6.3513 -0.8293 38 1 0.4347 -5.2302 -1.7158 39 1 2.7785 -6.7363 -2.9701 40 1 0.7788 -4.6851 -3.9132 41 1 2.4281 -5.0297 -4.5223 42 1 1.6849 -6.9614 -5.7608 43 1 0.3032 -5.8393 -5.9767 44 1 -0.1601 -8.2918 -4.9603 45 1 -0.9606 -6.8787 -4.2066 46 1 1.3664 -8.5173 -3.2098 47 1 0.1138 -7.6491 -2.2788 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191514876.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:34 Heat of formation + Delta-G solvation = -114.360970 kcal Electronic energy + Delta-G solvation = -26490.281651 eV Core-core repulsion = 22991.158297 eV Total energy + Delta-G solvation = -3499.123354 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.67168 -39.32132 -38.03916 -36.81908 -35.44089 -34.07586 -32.53562 -29.86612 -29.63320 -29.30754 -27.52936 -26.42814 -24.40942 -21.66425 -21.51286 -21.09420 -20.60754 -19.53674 -18.62943 -18.59876 -17.63272 -17.07900 -16.47557 -16.31467 -16.09172 -15.88177 -15.72002 -14.82363 -14.70762 -14.52973 -14.23536 -13.91256 -13.54624 -13.51631 -13.34331 -13.13127 -13.02222 -12.92460 -12.89591 -12.70303 -12.54765 -12.16202 -12.08341 -11.96296 -11.91575 -11.83355 -11.75782 -11.69948 -11.62789 -11.50829 -11.40879 -11.25322 -11.11224 -11.07965 -10.49449 -9.59109 -8.11646 -6.16742 -0.58019 1.37434 1.40547 1.48311 1.88550 2.44626 3.03167 3.19701 3.28066 3.42736 3.56648 3.66049 3.78638 3.93323 4.12729 4.16805 4.22897 4.37175 4.41065 4.52875 4.59678 4.69120 4.71294 4.74241 4.78508 4.82392 4.83395 4.88514 4.95730 4.99490 5.07661 5.15090 5.20244 5.22701 5.26572 5.29941 5.32949 5.37888 5.47665 5.48587 5.55725 5.72806 5.83608 5.86350 6.11783 6.25357 6.88511 7.48026 8.95892 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014006 B = 0.005239 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.597420 B = 5342.906436 C = 6421.701135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.016 3.984 3 Si 0.937 3.063 4 H -0.285 1.285 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.512 4.512 8 H 0.049 0.951 9 C 0.275 3.725 10 N -0.987 5.987 11 C 0.141 3.859 12 C -0.133 4.133 13 C -0.125 4.125 14 C -0.112 4.112 15 C -0.132 4.132 16 S 2.589 3.411 17 O -0.986 6.986 18 O -0.998 6.998 19 C -0.602 4.602 20 C -0.088 4.088 21 C -0.156 4.156 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.109 4.109 25 H 0.262 0.738 26 H 0.011 0.989 27 H 0.037 0.963 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.160 0.840 38 H 0.140 0.860 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.177 -17.352 -0.408 17.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.183 4.183 3 Si 0.764 3.236 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.552 4.552 8 H 0.067 0.933 9 C 0.152 3.848 10 N -0.824 5.824 11 C 0.035 3.965 12 C -0.172 4.172 13 C -0.163 4.163 14 C -0.150 4.150 15 C -0.171 4.171 16 S 2.688 3.312 17 O -0.977 6.977 18 O -0.989 6.989 19 C -0.734 4.734 20 C -0.108 4.108 21 C -0.194 4.194 22 C -0.157 4.157 23 C -0.162 4.162 24 C -0.147 4.147 25 H 0.071 0.929 26 H 0.029 0.971 27 H 0.055 0.945 28 H 0.117 0.883 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.178 0.822 38 H 0.158 0.842 39 H 0.104 0.896 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.084 0.916 46 H 0.104 0.896 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.422 -16.938 -0.927 16.969 hybrid contribution -0.099 1.448 0.017 1.452 sum 0.322 -15.489 -0.910 15.520 Atomic orbital electron populations 1.69984 1.06803 1.27405 1.52460 1.25510 0.95531 1.01662 0.95562 0.85870 0.79195 0.80668 0.77889 1.21137 1.20305 1.19322 1.21711 0.93001 0.91952 1.48496 0.93267 1.18570 0.87108 0.82535 0.96622 1.57420 1.59187 1.45094 1.20693 1.21608 0.95071 0.96212 0.83643 1.22723 0.98091 0.98016 0.98370 1.22500 0.98076 0.98017 0.97691 1.22273 1.00336 0.95203 0.97168 1.22594 0.98382 1.00466 0.95643 1.05313 0.76285 0.76182 0.73423 1.93563 1.87171 1.55700 1.61261 1.93468 1.38560 1.82013 1.84842 1.30650 1.17761 1.17308 1.07690 1.21667 1.01866 0.96828 0.90408 1.22865 1.01612 0.98360 0.96521 1.22505 0.99458 0.96992 0.96788 1.22407 0.98254 1.00025 0.95533 1.22208 0.97442 0.96158 0.98942 0.92857 0.97103 0.94515 0.88331 0.90353 0.92828 0.92593 0.91955 0.92073 0.89824 0.91619 0.88657 0.82228 0.84221 0.89605 0.91793 0.92332 0.90181 0.90938 0.89517 0.91606 0.89577 0.90226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.82 13.29 21.45 0.28 -53.54 16 2 C 0.02 0.89 5.46 84.65 0.46 1.35 16 3 Si 0.94 45.34 29.54 68.60 2.03 47.37 16 4 H -0.28 -13.93 7.11 99.48 0.71 -13.23 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.51 -28.27 6.89 25.60 0.18 -28.09 16 8 H 0.05 2.80 6.06 -2.91 -0.02 2.78 16 9 C 0.27 13.42 4.02 85.63 0.34 13.77 16 10 N -0.99 -39.66 2.60 -493.66 -1.29 -40.94 16 11 C 0.14 4.78 3.29 45.72 0.15 4.93 16 12 C -0.13 -4.84 5.84 31.70 0.19 -4.66 16 13 C -0.13 -4.39 6.35 31.91 0.20 -4.19 16 14 C -0.11 -3.07 6.83 31.67 0.22 -2.86 16 15 C -0.13 -3.62 6.03 31.32 0.19 -3.43 16 16 S 2.59 99.18 5.16 -56.49 -0.29 98.89 16 17 O -0.99 -47.14 15.87 -127.65 -2.03 -49.16 16 18 O -1.00 -40.81 16.58 -127.65 -2.12 -42.92 16 19 C -0.60 -15.56 5.28 71.98 0.38 -15.18 16 20 C -0.09 -2.07 2.93 -10.07 -0.03 -2.10 16 21 C -0.16 -4.20 5.11 31.70 0.16 -4.03 16 22 C -0.12 -2.36 6.91 31.91 0.22 -2.14 16 23 C -0.12 -2.05 6.83 31.67 0.22 -1.83 16 24 C -0.11 -1.86 6.46 31.32 0.20 -1.66 16 25 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.01 0.58 7.61 -2.39 -0.02 0.56 16 27 H 0.04 1.81 5.87 -2.39 -0.01 1.80 16 28 H 0.10 3.04 6.90 -2.39 -0.02 3.02 16 29 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.05 2.36 5.43 -2.39 -0.01 2.35 16 31 H 0.06 2.44 5.76 -2.39 -0.01 2.43 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 1.94 6.88 -2.39 -0.02 1.92 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.16 3.06 8.14 -2.39 -0.02 3.04 16 38 H 0.14 3.51 8.02 -2.39 -0.02 3.49 16 39 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.06 1.95 7.63 -2.39 -0.02 1.93 16 41 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 44 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.08 1.23 7.67 -2.39 -0.02 1.21 16 Total: -1.00 -70.76 364.57 0.60 -70.16 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.93 Total: 20.27 kcal Atomic # 6 Polarization: -53.20 SS G_CDS: 3.08 Total: -50.12 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -1.00 Total: -94.48 kcal Atomic # 8 Polarization: -87.95 SS G_CDS: -4.14 Total: -92.09 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 99.18 SS G_CDS: -0.29 Total: 98.89 kcal Total: -70.76 0.60 -70.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191514876.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.200 kcal (2) G-P(sol) polarization free energy of solvation -70.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds