Wall clock time and date at job start Tue Mar 31 2020 11:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.50194 * 110.99121 * 2 1 4 4 H 1.09002 * 112.16322 * 44.43566 * 3 2 1 5 5 C 1.54601 * 104.44704 * 282.66203 * 3 2 1 6 6 C 1.54296 * 104.84133 * 334.86933 * 5 3 2 7 7 C 1.48723 * 110.99745 * 246.42175 * 2 1 3 8 8 H 1.08995 * 112.23453 * 315.22320 * 7 2 1 9 9 C 1.53714 * 107.23849 * 191.66049 * 7 2 1 10 10 C 1.53135 * 108.88376 * 295.90838 * 9 7 2 11 11 H 1.09003 * 109.43228 * 293.99096 * 10 9 7 12 12 O 1.42901 * 109.42610 * 174.09500 * 10 9 7 13 13 C 1.35665 * 116.99978 * 154.86062 * 12 10 9 14 14 C 1.39166 * 119.90527 * 5.41851 * 13 12 10 15 15 C 1.37586 * 120.09291 * 179.97438 * 14 13 12 16 16 C 1.39952 * 119.90915 * 0.02562 * 15 14 13 17 17 C 1.47566 * 120.09457 * 180.02562 * 16 15 14 18 18 O 1.21816 * 120.00139 * 0.27769 * 17 16 15 19 19 C 1.41769 * 119.99852 * 179.97438 * 17 16 15 20 20 H 1.08000 * 119.99789 * 0.02562 * 19 17 16 21 21 C 1.40337 * 119.99929 * 179.97438 * 19 17 16 22 22 N 1.30528 * 120.00119 * 0.02562 * 21 19 17 23 23 Si 1.86800 * 119.99876 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47123 * 60.00203 * 23 21 19 25 25 H 1.48499 * 109.47072 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47000 * 300.00197 * 23 21 19 27 27 C 1.39951 * 119.80633 * 0.27300 * 16 15 14 28 28 C 1.37597 * 119.90801 * 359.42272 * 27 16 15 29 29 C 1.53144 * 109.68842 * 54.04335 * 10 9 7 30 30 H 1.09001 * 109.47423 * 173.57533 * 1 2 3 31 31 H 1.09004 * 109.47383 * 293.57786 * 1 2 3 32 32 H 1.09006 * 109.47212 * 53.57811 * 1 2 3 33 33 H 1.09000 * 110.36789 * 216.02787 * 5 3 2 34 34 H 1.08997 * 110.46184 * 93.75500 * 5 3 2 35 35 H 1.08998 * 110.36507 * 241.15958 * 6 5 3 36 36 H 1.08998 * 110.45436 * 118.89169 * 6 5 3 37 37 H 1.09000 * 109.56643 * 176.09482 * 9 7 2 38 38 H 1.08996 * 109.66586 * 55.79228 * 9 7 2 39 39 H 1.08006 * 119.95154 * 359.97438 * 14 13 12 40 40 H 1.07999 * 120.04710 * 180.02562 * 15 14 13 41 41 H 0.97000 * 119.99823 * 179.97438 * 22 21 19 42 42 H 1.08010 * 120.04383 * 179.70241 * 27 16 15 43 43 H 1.07999 * 119.95453 * 180.29159 * 28 27 16 44 44 H 1.09008 * 109.56566 * 65.77898 * 29 10 9 45 45 H 1.08992 * 109.56995 * 186.13539 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0070 1.4023 0.0000 4 1 1.4813 2.0444 0.7067 5 6 1.8388 1.8799 -1.4607 6 6 1.8354 0.5863 -2.3017 7 6 2.0019 -0.5554 -1.2726 8 1 1.4811 -1.4634 -1.5764 9 6 3.5074 -0.7914 -1.0715 10 6 4.1937 0.5575 -0.8378 11 1 4.1252 1.1608 -1.7430 12 8 5.5685 0.3415 -0.5134 13 6 6.4312 1.3533 -0.7825 14 6 5.9469 2.5739 -1.2434 15 6 6.8183 3.6029 -1.5170 16 6 8.1935 3.4206 -1.3317 17 6 9.1317 4.5217 -1.6233 18 8 8.7092 5.5927 -2.0212 19 6 10.5243 4.3350 -1.4343 20 1 10.8985 3.3869 -1.0773 21 6 11.4167 5.3819 -1.7122 22 7 10.9644 6.5277 -2.1441 23 14 13.2516 5.1358 -1.4639 24 1 13.7233 4.0236 -2.3277 25 1 13.9719 6.3829 -1.8262 26 1 13.5186 4.8049 -0.0410 27 6 8.6767 2.1895 -0.8739 28 6 7.7978 1.1677 -0.5967 29 6 3.5072 1.2924 0.3172 30 1 -0.3634 -1.0212 -0.1150 31 1 -0.3634 0.4111 0.9419 32 1 -0.3634 0.6102 -0.8270 33 1 2.6739 2.5181 -1.7497 34 1 0.8957 2.4130 -1.5811 35 1 2.6689 0.5883 -3.0041 36 1 0.8908 0.4813 -2.8353 37 1 3.9248 -1.2641 -1.9605 38 1 3.6654 -1.4360 -0.2069 39 1 4.8856 2.7135 -1.3866 40 1 6.4417 4.5499 -1.8743 41 1 11.5812 7.2514 -2.3358 42 1 9.7376 2.0431 -0.7341 43 1 8.1694 0.2189 -0.2390 44 1 3.6635 0.7415 1.2447 45 1 3.9244 2.2949 0.4113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233517210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:17 Heat of formation + Delta-G solvation = -45.332968 kcal Electronic energy + Delta-G solvation = -26198.090996 eV Core-core repulsion = 22566.516969 eV Total energy + Delta-G solvation = -3631.574027 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.29884 -39.32398 -37.44803 -35.68126 -33.00096 -32.66687 -31.66234 -30.97099 -30.44536 -29.27543 -26.63700 -26.28584 -24.54154 -23.29458 -22.40594 -21.43955 -20.69356 -19.60893 -18.98231 -18.11175 -16.99896 -16.40247 -15.89374 -15.43960 -15.03711 -14.87376 -14.48238 -14.32092 -14.26850 -13.81503 -13.37647 -13.14581 -13.09253 -12.93470 -12.80234 -12.59255 -12.49993 -12.33695 -11.98815 -11.82714 -11.72715 -11.36271 -11.21800 -11.20597 -11.16319 -10.82904 -10.70326 -10.62112 -10.42459 -10.35115 -10.10139 -9.90478 -8.96458 -8.90012 -8.40068 -7.47786 -7.42845 -6.30051 -4.90280 1.87897 2.02628 3.07360 3.12635 3.14682 3.36039 3.59687 4.00845 4.04495 4.28619 4.34952 4.51487 4.65706 4.78567 4.84356 4.90010 4.96827 4.98835 4.99437 5.12202 5.27070 5.33860 5.39935 5.44858 5.48507 5.55430 5.60462 5.66996 5.75026 5.81818 5.82431 5.87249 5.90718 6.01518 6.03905 6.15236 6.17795 6.37103 6.45763 6.66378 6.72606 6.88673 7.06091 7.25148 7.38232 7.41673 7.89394 8.03679 8.79388 8.84912 10.31648 10.53775 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.033953 B = 0.002645 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.480678 B =10582.964038 C =11041.894111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.504 5.504 3 C 0.064 3.936 4 H 0.096 0.904 5 C -0.154 4.154 6 C -0.155 4.155 7 C 0.065 3.935 8 H 0.098 0.902 9 C -0.103 4.103 10 C 0.086 3.914 11 H 0.075 0.925 12 O -0.313 6.313 13 C 0.115 3.885 14 C -0.222 4.222 15 C -0.056 4.056 16 C -0.138 4.138 17 C 0.389 3.611 18 O -0.545 6.545 19 C -0.518 4.518 20 H 0.074 0.926 21 C 0.080 3.920 22 N -0.736 5.736 23 Si 0.906 3.094 24 H -0.264 1.264 25 H -0.278 1.278 26 H -0.264 1.264 27 C -0.056 4.056 28 C -0.166 4.166 29 C -0.133 4.133 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.126 0.874 41 H 0.274 0.726 42 H 0.136 0.864 43 H 0.122 0.878 44 H 0.085 0.915 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.503 -13.412 2.352 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.226 5.226 3 C -0.044 4.044 4 H 0.114 0.886 5 C -0.192 4.192 6 C -0.194 4.194 7 C -0.044 4.044 8 H 0.116 0.884 9 C -0.141 4.141 10 C 0.030 3.970 11 H 0.093 0.907 12 O -0.228 6.228 13 C 0.070 3.930 14 C -0.240 4.240 15 C -0.075 4.075 16 C -0.139 4.139 17 C 0.286 3.714 18 O -0.435 6.435 19 C -0.549 4.549 20 H 0.092 0.908 21 C -0.144 4.144 22 N -0.365 5.365 23 Si 0.730 3.270 24 H -0.189 1.189 25 H -0.203 1.203 26 H -0.189 1.189 27 C -0.075 4.075 28 C -0.185 4.185 29 C -0.171 4.171 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.136 0.864 40 H 0.144 0.856 41 H 0.085 0.915 42 H 0.153 0.847 43 H 0.140 0.860 44 H 0.103 0.897 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.536 -13.247 2.687 22.140 hybrid contribution 0.395 0.447 -0.656 0.887 sum -17.140 -12.800 2.031 21.489 Atomic orbital electron populations 1.22483 0.88430 1.01765 1.01161 1.66158 1.07952 1.15546 1.32952 1.23318 0.95593 0.89579 0.95957 0.88562 1.22936 1.02684 0.97969 0.95654 1.23001 1.02556 0.94915 0.98887 1.23016 0.95226 0.97671 0.88477 0.88369 1.21708 0.92863 0.96272 1.03207 1.22506 0.79420 0.97325 0.97742 0.90720 1.85990 1.17483 1.39315 1.79989 1.19121 0.89744 0.87014 0.97075 1.21107 0.99610 0.94036 1.09265 1.21174 0.92903 0.97862 0.95518 1.21797 0.95034 0.97347 0.99725 1.18062 0.88051 0.85301 0.80024 1.90496 1.80090 1.27159 1.45764 1.20909 0.93063 0.99364 1.41541 0.90803 1.26007 1.00999 0.94455 0.92904 1.69951 1.36481 1.02206 1.27855 0.86439 0.82054 0.78646 0.79866 1.18874 1.20293 1.18856 1.21394 0.99658 0.91539 0.94873 1.20354 0.89844 1.00569 1.07713 1.22267 0.93474 1.01498 0.99820 0.91431 0.91314 0.95095 0.90419 0.91348 0.90465 0.91481 0.90774 0.89845 0.86420 0.85645 0.91461 0.84676 0.86041 0.89680 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.48 60.06 0.57 0.64 16 2 N -0.50 -4.57 5.34 -219.87 -1.17 -5.74 16 3 C 0.06 0.60 3.67 -64.64 -0.24 0.36 16 4 H 0.10 0.83 8.11 -51.93 -0.42 0.41 16 5 C -0.15 -1.34 5.30 -25.21 -0.13 -1.48 16 6 C -0.15 -1.27 5.34 -25.21 -0.13 -1.40 16 7 C 0.07 0.55 3.63 -65.49 -0.24 0.32 16 8 H 0.10 0.71 8.11 -51.93 -0.42 0.29 16 9 C -0.10 -1.04 5.26 -26.29 -0.14 -1.18 16 10 C 0.09 1.05 1.76 -26.59 -0.05 1.00 16 11 H 0.08 0.92 3.67 -51.93 -0.19 0.73 16 12 O -0.31 -4.84 9.79 -18.70 -0.18 -5.02 16 13 C 0.12 2.01 6.62 -38.90 -0.26 1.75 16 14 C -0.22 -3.93 8.28 -39.47 -0.33 -4.25 16 15 C -0.06 -1.20 9.59 -39.18 -0.38 -1.57 16 16 C -0.14 -3.26 5.89 -104.81 -0.62 -3.88 16 17 C 0.39 11.09 6.91 -34.43 -0.24 10.86 16 18 O -0.54 -17.42 14.89 5.08 0.08 -17.34 16 19 C -0.52 -14.23 8.86 -37.44 -0.33 -14.56 16 20 H 0.07 1.83 6.01 -52.49 -0.32 1.51 16 21 C 0.08 2.14 5.50 -17.32 -0.10 2.05 16 22 N -0.74 -21.25 11.73 55.57 0.65 -20.60 16 23 Si 0.91 19.24 29.56 -169.99 -5.03 14.22 16 24 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 25 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 27 C -0.06 -1.15 9.43 -39.17 -0.37 -1.52 16 28 C -0.17 -2.99 9.97 -39.47 -0.39 -3.39 16 29 C -0.13 -1.51 4.97 -26.28 -0.13 -1.64 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.03 0.21 6.92 -51.93 -0.36 -0.15 16 33 H 0.08 0.75 6.53 -51.93 -0.34 0.41 16 34 H 0.07 0.54 8.03 -51.93 -0.42 0.12 16 35 H 0.08 0.67 7.07 -51.93 -0.37 0.30 16 36 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.12 1.76 4.79 -52.48 -0.25 1.51 16 40 H 0.13 2.73 7.65 -52.49 -0.40 2.33 16 41 H 0.27 7.10 8.29 -40.82 -0.34 6.77 16 42 H 0.14 2.63 6.19 -52.48 -0.33 2.30 16 43 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 44 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 45 H 0.07 0.92 6.85 -51.93 -0.36 0.56 16 LS Contribution 348.21 15.07 5.25 5.25 Total: -1.00 -32.40 348.21 -10.16 -42.56 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.26 Total: 4.59 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -3.49 Total: -17.90 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: -0.52 Total: -26.34 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.11 Total: -22.37 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.40 -10.16 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233517210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.774 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds