Wall clock time and date at job start Tue Mar 31 2020 11:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.50194 * 110.99121 * 2 1 4 4 H 1.09002 * 112.16322 * 44.43566 * 3 2 1 5 5 C 1.54601 * 104.44704 * 282.66203 * 3 2 1 6 6 C 1.54296 * 104.84133 * 334.86933 * 5 3 2 7 7 C 1.48723 * 110.99745 * 246.42175 * 2 1 3 8 8 H 1.08995 * 112.23453 * 315.22320 * 7 2 1 9 9 C 1.53714 * 107.23849 * 191.66049 * 7 2 1 10 10 C 1.53135 * 108.88376 * 295.90838 * 9 7 2 11 11 H 1.09003 * 109.43228 * 293.99096 * 10 9 7 12 12 O 1.42901 * 109.42610 * 174.09500 * 10 9 7 13 13 C 1.35665 * 116.99978 * 154.86062 * 12 10 9 14 14 C 1.39166 * 119.90527 * 5.41851 * 13 12 10 15 15 C 1.37586 * 120.09291 * 179.97438 * 14 13 12 16 16 C 1.39952 * 119.90915 * 0.02562 * 15 14 13 17 17 C 1.47566 * 120.09457 * 180.02562 * 16 15 14 18 18 O 1.21816 * 120.00139 * 0.27769 * 17 16 15 19 19 C 1.41769 * 119.99852 * 179.97438 * 17 16 15 20 20 H 1.08000 * 119.99789 * 0.02562 * 19 17 16 21 21 C 1.40337 * 119.99929 * 179.97438 * 19 17 16 22 22 N 1.30528 * 120.00119 * 0.02562 * 21 19 17 23 23 Si 1.86800 * 119.99876 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47123 * 60.00203 * 23 21 19 25 25 H 1.48499 * 109.47072 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47000 * 300.00197 * 23 21 19 27 27 C 1.39951 * 119.80633 * 0.27300 * 16 15 14 28 28 C 1.37597 * 119.90801 * 359.42272 * 27 16 15 29 29 C 1.53144 * 109.68842 * 54.04335 * 10 9 7 30 30 H 1.09001 * 109.47423 * 173.57533 * 1 2 3 31 31 H 1.09004 * 109.47383 * 293.57786 * 1 2 3 32 32 H 1.09006 * 109.47212 * 53.57811 * 1 2 3 33 33 H 1.09000 * 110.36789 * 216.02787 * 5 3 2 34 34 H 1.08997 * 110.46184 * 93.75500 * 5 3 2 35 35 H 1.08998 * 110.36507 * 241.15958 * 6 5 3 36 36 H 1.08998 * 110.45436 * 118.89169 * 6 5 3 37 37 H 1.09000 * 109.56643 * 176.09482 * 9 7 2 38 38 H 1.08996 * 109.66586 * 55.79228 * 9 7 2 39 39 H 1.08006 * 119.95154 * 359.97438 * 14 13 12 40 40 H 1.07999 * 120.04710 * 180.02562 * 15 14 13 41 41 H 0.97000 * 119.99823 * 179.97438 * 22 21 19 42 42 H 1.08010 * 120.04383 * 179.70241 * 27 16 15 43 43 H 1.07999 * 119.95453 * 180.29159 * 28 27 16 44 44 H 1.09008 * 109.56566 * 65.77898 * 29 10 9 45 45 H 1.08992 * 109.56995 * 186.13539 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0070 1.4023 0.0000 4 1 1.4813 2.0444 0.7067 5 6 1.8388 1.8799 -1.4607 6 6 1.8354 0.5863 -2.3017 7 6 2.0019 -0.5554 -1.2726 8 1 1.4811 -1.4634 -1.5764 9 6 3.5074 -0.7914 -1.0715 10 6 4.1937 0.5575 -0.8378 11 1 4.1252 1.1608 -1.7430 12 8 5.5685 0.3415 -0.5134 13 6 6.4312 1.3533 -0.7825 14 6 5.9469 2.5739 -1.2434 15 6 6.8183 3.6029 -1.5170 16 6 8.1935 3.4206 -1.3317 17 6 9.1317 4.5217 -1.6233 18 8 8.7092 5.5927 -2.0212 19 6 10.5243 4.3350 -1.4343 20 1 10.8985 3.3869 -1.0773 21 6 11.4167 5.3819 -1.7122 22 7 10.9644 6.5277 -2.1441 23 14 13.2516 5.1358 -1.4639 24 1 13.7233 4.0236 -2.3277 25 1 13.9719 6.3829 -1.8262 26 1 13.5186 4.8049 -0.0410 27 6 8.6767 2.1895 -0.8739 28 6 7.7978 1.1677 -0.5967 29 6 3.5072 1.2924 0.3172 30 1 -0.3634 -1.0212 -0.1150 31 1 -0.3634 0.4111 0.9419 32 1 -0.3634 0.6102 -0.8270 33 1 2.6739 2.5181 -1.7497 34 1 0.8957 2.4130 -1.5811 35 1 2.6689 0.5883 -3.0041 36 1 0.8908 0.4813 -2.8353 37 1 3.9248 -1.2641 -1.9605 38 1 3.6654 -1.4360 -0.2069 39 1 4.8856 2.7135 -1.3866 40 1 6.4417 4.5499 -1.8743 41 1 11.5812 7.2514 -2.3358 42 1 9.7376 2.0431 -0.7341 43 1 8.1694 0.2189 -0.2390 44 1 3.6635 0.7415 1.2447 45 1 3.9244 2.2949 0.4113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233517210.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:16 Heat of formation + Delta-G solvation = -65.709712 kcal Electronic energy + Delta-G solvation = -26198.974598 eV Core-core repulsion = 22566.516969 eV Total energy + Delta-G solvation = -3632.457629 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.18383 -40.63965 -39.14259 -37.47068 -34.79107 -33.84192 -32.49318 -31.97586 -31.80873 -30.83144 -28.59126 -27.04760 -25.35291 -24.55149 -23.96542 -22.66612 -21.44516 -21.40108 -19.82734 -19.38162 -18.61183 -17.69645 -17.38104 -16.83693 -16.23168 -15.94930 -15.88975 -15.43922 -15.18559 -15.08924 -14.92656 -14.50933 -14.41901 -14.10286 -13.82798 -13.74803 -13.55850 -13.54770 -13.46135 -13.06404 -12.90765 -12.70864 -12.67109 -12.46705 -12.24565 -12.13332 -12.07992 -11.87840 -11.55902 -11.39151 -11.33623 -11.19604 -10.96958 -9.94525 -9.62083 -9.54973 -9.02271 -8.34196 -7.07271 0.23291 0.46806 1.38664 1.41233 1.54079 2.16519 2.21527 2.22314 2.85502 2.91400 3.54953 3.58086 3.74965 3.82587 3.87320 3.88493 4.01762 4.04686 4.06996 4.16162 4.27437 4.28394 4.39534 4.41128 4.51551 4.52098 4.58580 4.70692 4.75914 4.84607 4.92630 4.96831 4.99081 5.00333 5.08241 5.10437 5.12417 5.20068 5.22668 5.24198 5.35324 5.45027 5.74982 5.77856 5.82666 5.98775 6.09627 6.50262 6.70025 6.80529 8.25252 8.49285 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.033953 B = 0.002645 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.480678 B =10582.964038 C =11041.894111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.515 5.515 3 C 0.067 3.933 4 H 0.103 0.897 5 C -0.154 4.154 6 C -0.153 4.153 7 C 0.069 3.931 8 H 0.117 0.883 9 C -0.099 4.099 10 C 0.080 3.920 11 H 0.076 0.924 12 O -0.313 6.313 13 C 0.132 3.868 14 C -0.210 4.210 15 C -0.067 4.067 16 C -0.180 4.180 17 C 0.365 3.635 18 O -0.601 6.601 19 C -0.544 4.544 20 H 0.097 0.903 21 C 0.022 3.978 22 N -0.789 5.789 23 Si 0.996 3.004 24 H -0.250 1.250 25 H -0.270 1.270 26 H -0.250 1.250 27 C -0.053 4.053 28 C -0.162 4.162 29 C -0.130 4.130 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.145 0.855 40 H 0.107 0.893 41 H 0.282 0.718 42 H 0.142 0.858 43 H 0.154 0.846 44 H 0.076 0.924 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.051 -16.266 2.919 24.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.238 5.238 3 C -0.042 4.042 4 H 0.121 0.879 5 C -0.193 4.193 6 C -0.192 4.192 7 C -0.040 4.040 8 H 0.135 0.865 9 C -0.137 4.137 10 C 0.024 3.976 11 H 0.094 0.906 12 O -0.227 6.227 13 C 0.086 3.914 14 C -0.229 4.229 15 C -0.086 4.086 16 C -0.181 4.181 17 C 0.265 3.735 18 O -0.496 6.496 19 C -0.574 4.574 20 H 0.115 0.885 21 C -0.197 4.197 22 N -0.418 5.418 23 Si 0.814 3.186 24 H -0.174 1.174 25 H -0.195 1.195 26 H -0.174 1.174 27 C -0.071 4.071 28 C -0.180 4.180 29 C -0.168 4.168 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.162 0.838 40 H 0.125 0.875 41 H 0.092 0.908 42 H 0.160 0.840 43 H 0.171 0.829 44 H 0.095 0.905 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.110 -16.138 3.264 24.476 hybrid contribution 0.379 1.228 -0.796 1.512 sum -17.731 -14.910 2.468 23.298 Atomic orbital electron populations 1.22522 0.87057 1.02617 1.01571 1.66123 1.09279 1.15027 1.33362 1.23269 0.94094 0.90297 0.96528 0.87872 1.22939 1.02786 0.98271 0.95305 1.22995 1.03158 0.94333 0.98665 1.23049 0.94030 0.98518 0.88354 0.86487 1.21730 0.93980 0.94684 1.03309 1.22823 0.77755 0.99034 0.97990 0.90646 1.86019 1.18909 1.38343 1.79459 1.19215 0.90208 0.87047 0.94906 1.21225 1.00380 0.93175 1.08089 1.21100 0.92756 0.98314 0.96382 1.21452 0.95236 0.97622 1.03790 1.18794 0.89758 0.85826 0.79101 1.90433 1.81162 1.29547 1.48489 1.21447 0.93377 1.00799 1.41788 0.88519 1.27311 1.07287 0.93533 0.91564 1.70107 1.39142 1.03640 1.28914 0.85094 0.73846 0.79128 0.80534 1.17365 1.19481 1.17403 1.21398 1.00504 0.90781 0.94417 1.20604 0.89773 1.00969 1.06650 1.22216 0.95091 1.00421 0.99083 0.90380 0.91052 0.94559 0.91613 0.90263 0.90972 0.90045 0.90011 0.90381 0.83771 0.87464 0.90765 0.83994 0.82865 0.90549 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.48 127.69 1.21 1.33 16 2 N -0.52 -8.01 5.34 -849.52 -4.54 -12.55 16 3 C 0.07 1.12 3.67 45.06 0.17 1.28 16 4 H 0.10 1.59 8.11 -2.39 -0.02 1.58 16 5 C -0.15 -2.39 5.30 31.58 0.17 -2.22 16 6 C -0.15 -2.10 5.34 31.58 0.17 -1.93 16 7 C 0.07 0.97 3.63 45.35 0.16 1.14 16 8 H 0.12 1.26 8.11 -2.39 -0.02 1.24 16 9 C -0.10 -1.76 5.26 30.88 0.16 -1.60 16 10 C 0.08 1.78 1.76 30.69 0.05 1.84 16 11 H 0.08 1.71 3.67 -2.39 -0.01 1.71 16 12 O -0.31 -8.97 9.79 -89.81 -0.88 -9.85 16 13 C 0.13 4.40 6.62 22.71 0.15 4.55 16 14 C -0.21 -7.38 8.28 22.34 0.18 -7.20 16 15 C -0.07 -2.98 9.59 22.53 0.22 -2.76 16 16 C -0.18 -8.87 5.89 -19.99 -0.12 -8.98 16 17 C 0.36 21.95 6.91 25.61 0.18 22.13 16 18 O -0.60 -41.19 14.89 -4.72 -0.07 -41.26 16 19 C -0.54 -30.77 8.86 23.65 0.21 -30.56 16 20 H 0.10 4.81 6.01 -2.91 -0.02 4.79 16 21 C 0.02 1.20 5.50 85.40 0.47 1.67 16 22 N -0.79 -47.46 11.73 21.89 0.26 -47.20 16 23 Si 1.00 39.47 29.56 68.60 2.03 41.50 16 24 H -0.25 -9.27 7.11 99.48 0.71 -8.57 16 25 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 26 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 27 C -0.05 -2.15 9.43 22.53 0.21 -1.94 16 28 C -0.16 -5.52 9.97 22.34 0.22 -5.30 16 29 C -0.13 -2.79 4.97 30.89 0.15 -2.63 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.04 0.38 6.92 -2.38 -0.02 0.37 16 33 H 0.07 1.18 6.53 -2.39 -0.02 1.16 16 34 H 0.08 1.07 8.03 -2.39 -0.02 1.05 16 35 H 0.07 1.08 7.07 -2.39 -0.02 1.07 16 36 H 0.08 0.91 8.11 -2.39 -0.02 0.89 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.14 4.20 4.79 -2.91 -0.01 4.19 16 40 H 0.11 5.05 7.65 -2.91 -0.02 5.03 16 41 H 0.28 15.15 8.29 -92.71 -0.77 14.38 16 42 H 0.14 5.44 6.19 -2.91 -0.02 5.42 16 43 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 44 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 45 H 0.06 1.48 6.85 -2.39 -0.02 1.46 16 Total: -1.00 -74.46 348.21 1.78 -72.69 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 1.01 Total: 27.86 kcal Atomic # 6 Polarization: -35.16 SS G_CDS: 3.97 Total: -31.19 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: -4.28 Total: -59.75 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -0.95 Total: -51.10 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -74.46 1.78 -72.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233517210.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.977 kcal (2) G-P(sol) polarization free energy of solvation -74.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds