Wall clock time and date at job start Tue Mar 31 2020 11:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48719 * 111.00131 * 2 1 4 4 H 1.09004 * 112.23315 * 44.77977 * 3 2 1 5 5 C 1.54601 * 104.22271 * 282.48731 * 3 2 1 6 6 C 1.54284 * 104.84396 * 334.82058 * 5 3 2 7 7 C 1.48718 * 111.00127 * 245.53161 * 2 1 3 8 8 H 1.09002 * 112.23430 * 315.84603 * 7 2 1 9 9 C 1.53705 * 107.24036 * 191.65525 * 7 2 1 10 10 C 1.53138 * 108.88931 * 295.91433 * 9 7 2 11 11 H 1.08998 * 109.42405 * 293.93244 * 10 9 7 12 12 O 1.42898 * 109.42698 * 174.09311 * 10 9 7 13 13 C 1.35634 * 117.00270 * 84.89490 * 12 10 9 14 14 C 1.38679 * 120.15775 * 354.46326 * 13 12 10 15 15 C 1.38086 * 120.08953 * 179.97438 * 14 13 12 16 16 C 1.38687 * 120.41670 * 359.97438 * 15 14 13 17 17 C 1.37699 * 120.32434 * 359.97438 * 16 15 14 18 18 C 1.39846 * 119.89992 * 359.76800 * 17 16 15 19 19 C 1.47533 * 120.20556 * 180.25498 * 18 17 16 20 20 O 1.21810 * 119.99790 * 180.23485 * 19 18 17 21 21 C 1.41828 * 120.00156 * 0.22851 * 19 18 17 22 22 H 1.08003 * 120.00074 * 0.02562 * 21 19 18 23 23 C 1.40323 * 120.00299 * 179.97438 * 21 19 18 24 24 N 1.30547 * 119.99724 * 0.02562 * 23 21 19 25 25 Si 1.86797 * 120.00426 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46827 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46991 * 120.00100 * 25 23 21 28 28 H 1.48497 * 109.47567 * 240.00470 * 25 23 21 29 29 C 1.53133 * 109.72928 * 54.01608 * 10 9 7 30 30 H 1.09001 * 109.47222 * 174.46596 * 1 2 3 31 31 H 1.09003 * 109.46945 * 294.46937 * 1 2 3 32 32 H 1.09006 * 109.46682 * 54.46661 * 1 2 3 33 33 H 1.09000 * 110.36475 * 215.97706 * 5 3 2 34 34 H 1.09000 * 110.36558 * 93.66287 * 5 3 2 35 35 H 1.08995 * 110.36443 * 241.15780 * 6 5 3 36 36 H 1.09002 * 110.36449 * 118.84113 * 6 5 3 37 37 H 1.09000 * 109.56628 * 55.73455 * 9 7 2 38 38 H 1.08999 * 109.56894 * 176.09029 * 9 7 2 39 39 H 1.07994 * 119.95450 * 359.97438 * 14 13 12 40 40 H 1.07999 * 119.79031 * 179.97438 * 15 14 13 41 41 H 1.08009 * 119.83842 * 179.97438 * 16 15 14 42 42 H 1.08008 * 120.05100 * 180.02562 * 17 16 15 43 43 H 0.97000 * 119.99551 * 179.97438 * 24 23 21 44 44 H 1.09003 * 109.56792 * 186.16668 * 29 10 9 45 45 H 1.09004 * 109.67106 * 65.86407 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0020 1.3884 0.0000 4 1 1.4812 2.0301 0.7107 5 6 1.8357 1.8591 -1.4632 6 6 1.8357 0.5618 -2.2982 7 6 2.0020 -0.5751 -1.2637 8 1 1.4740 -1.4817 -1.5592 9 6 3.5075 -0.8077 -1.0590 10 6 4.1938 0.5447 -0.8462 11 1 4.1261 1.1334 -1.7610 12 8 5.5686 0.3337 -0.5184 13 6 6.4311 0.1759 -1.5532 14 6 5.9542 0.1077 -2.8536 15 6 6.8336 -0.0524 -3.9060 16 6 8.1976 -0.1456 -3.6733 17 6 8.6899 -0.0789 -2.3890 18 6 7.8118 0.0885 -1.3136 19 6 8.3324 0.1664 0.0646 20 8 7.5637 0.3080 0.9988 21 6 9.7278 0.0765 0.3017 22 1 10.4094 -0.0487 -0.5267 23 6 10.2230 0.1512 1.6125 24 7 9.3993 0.3030 2.6138 25 14 12.0608 0.0320 1.9249 26 1 12.7726 -0.1367 0.6326 27 1 12.5313 1.2734 2.5904 28 1 12.3396 -1.1350 2.8000 29 6 3.5076 1.2984 0.2967 30 1 -0.3634 -1.0229 -0.0991 31 1 -0.3633 0.4257 0.9354 32 1 -0.3633 0.5973 -0.8364 33 1 2.6703 2.4972 -1.7536 34 1 0.8912 2.3893 -1.5860 35 1 2.6703 0.5619 -2.9992 36 1 0.8912 0.4540 -2.8316 37 1 3.6637 -1.4381 -0.1836 38 1 3.9250 -1.2942 -1.9405 39 1 4.8935 0.1798 -3.0434 40 1 6.4569 -0.1054 -4.9168 41 1 8.8771 -0.2712 -4.5034 42 1 9.7531 -0.1516 -2.2129 43 1 9.7416 0.3543 3.5199 44 1 3.9250 2.3023 0.3743 45 1 3.6637 0.7645 1.2341 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233522922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:21 Heat of formation + Delta-G solvation = -38.468099 kcal Electronic energy + Delta-G solvation = -27101.927127 eV Core-core repulsion = 23470.650783 eV Total energy + Delta-G solvation = -3631.276344 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.10446 -39.19167 -36.85390 -35.91926 -32.79900 -32.47819 -31.42856 -30.72043 -30.44674 -28.91549 -26.70189 -26.02201 -24.28187 -23.00453 -22.64068 -21.03825 -20.58905 -19.67264 -18.64984 -17.71640 -16.70345 -16.32537 -15.72676 -15.25308 -14.82620 -14.63109 -14.41783 -14.29277 -14.04234 -13.69719 -13.25726 -13.12828 -12.88790 -12.80614 -12.57140 -12.44944 -12.28823 -12.06386 -11.65633 -11.56405 -11.38529 -11.19137 -11.16724 -11.10814 -10.96748 -10.83121 -10.47593 -10.43261 -10.28228 -10.04735 -10.00150 -9.96659 -8.89879 -8.62919 -8.15120 -7.36535 -7.28307 -6.17290 -4.77587 1.85546 2.12726 3.09316 3.18176 3.22421 3.73910 3.86103 4.07999 4.13786 4.50506 4.59334 4.70146 4.72469 5.01968 5.09920 5.13044 5.18637 5.21683 5.22613 5.29476 5.37344 5.45756 5.54427 5.62152 5.68794 5.71549 5.75603 5.75712 5.84631 5.93582 5.96733 6.03421 6.06449 6.13292 6.23334 6.38425 6.40543 6.52904 6.74174 6.75571 6.97164 6.99888 7.01227 7.21833 7.35507 7.54746 8.13636 8.24751 8.90640 8.96366 10.44217 10.68174 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017865 B = 0.003920 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.920007 B = 7141.431121 C = 8342.322808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.506 5.506 3 C 0.068 3.932 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.154 4.154 7 C 0.068 3.932 8 H 0.095 0.905 9 C -0.133 4.133 10 C 0.082 3.918 11 H 0.067 0.933 12 O -0.262 6.262 13 C 0.154 3.846 14 C -0.232 4.232 15 C -0.093 4.093 16 C -0.178 4.178 17 C -0.059 4.059 18 C -0.138 4.138 19 C 0.391 3.609 20 O -0.516 6.516 21 C -0.522 4.522 22 H 0.072 0.928 23 C 0.081 3.919 24 N -0.738 5.738 25 Si 0.903 3.097 26 H -0.261 1.261 27 H -0.274 1.274 28 H -0.274 1.274 29 C -0.102 4.102 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.134 0.866 43 H 0.271 0.729 44 H 0.074 0.926 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.799 0.867 -9.834 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.228 5.228 3 C -0.040 4.040 4 H 0.117 0.883 5 C -0.193 4.193 6 C -0.193 4.193 7 C -0.041 4.041 8 H 0.113 0.887 9 C -0.171 4.171 10 C 0.025 3.975 11 H 0.084 0.916 12 O -0.173 6.173 13 C 0.107 3.893 14 C -0.250 4.250 15 C -0.112 4.112 16 C -0.196 4.196 17 C -0.077 4.077 18 C -0.140 4.140 19 C 0.284 3.716 20 O -0.403 6.403 21 C -0.554 4.554 22 H 0.090 0.910 23 C -0.142 4.142 24 N -0.367 5.367 25 Si 0.727 3.273 26 H -0.185 1.185 27 H -0.200 1.200 28 H -0.199 1.199 29 C -0.140 4.140 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.047 0.953 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.136 0.864 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.152 0.848 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.070 0.636 -8.487 16.444 hybrid contribution 0.503 0.370 -1.109 1.273 sum -13.567 1.006 -9.596 16.648 Atomic orbital electron populations 1.22463 0.88494 1.01679 1.00899 1.65463 1.07661 1.15562 1.34152 1.23042 0.95701 0.89623 0.95663 0.88315 1.22987 1.02242 0.97892 0.96185 1.22994 1.02068 0.95266 0.98933 1.23018 0.95801 0.97224 0.88056 0.88726 1.22273 0.93183 0.98307 1.03349 1.22482 0.81020 0.95655 0.98334 0.91570 1.86517 1.15788 1.84998 1.30010 1.19423 0.90058 0.93781 0.86058 1.21113 0.99612 1.11812 0.92502 1.20793 0.93377 0.99455 0.97545 1.20930 0.95070 1.06668 0.96930 1.21404 1.00077 0.95213 0.90992 1.21568 0.89419 1.02736 1.00257 1.17994 0.89676 0.79735 0.84184 1.90552 1.59646 1.46687 1.43419 1.20932 0.94115 1.47342 0.93003 0.91014 1.25954 0.99330 0.92881 0.96001 1.69987 1.35734 1.31309 0.99655 0.86380 0.83112 0.78453 0.79329 1.18469 1.19967 1.19947 1.21669 0.91969 1.00899 0.99461 0.91533 0.91384 0.95343 0.90544 0.91700 0.90804 0.91728 0.89624 0.91128 0.86421 0.87083 0.86872 0.84846 0.91757 0.90720 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.45 60.07 0.57 0.69 16 2 N -0.51 -6.11 5.29 -221.09 -1.17 -7.28 16 3 C 0.07 0.82 3.68 -65.49 -0.24 0.57 16 4 H 0.10 1.05 8.11 -51.93 -0.42 0.63 16 5 C -0.15 -1.60 5.29 -25.22 -0.13 -1.73 16 6 C -0.15 -1.57 5.33 -25.21 -0.13 -1.70 16 7 C 0.07 0.79 3.68 -65.49 -0.24 0.55 16 8 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 9 C -0.13 -1.96 4.91 -26.29 -0.13 -2.09 16 10 C 0.08 1.36 1.76 -26.59 -0.05 1.32 16 11 H 0.07 1.01 3.70 -51.93 -0.19 0.82 16 12 O -0.26 -5.92 7.88 -40.43 -0.32 -6.23 16 13 C 0.15 3.40 6.62 -38.61 -0.26 3.14 16 14 C -0.23 -4.11 8.29 -39.47 -0.33 -4.44 16 15 C -0.09 -1.52 10.03 -39.47 -0.40 -1.91 16 16 C -0.18 -3.05 10.02 -39.61 -0.40 -3.44 16 17 C -0.06 -1.21 9.43 -39.18 -0.37 -1.58 16 18 C -0.14 -3.38 5.90 -104.69 -0.62 -3.99 16 19 C 0.39 11.41 6.91 -34.42 -0.24 11.17 16 20 O -0.52 -16.79 13.71 -16.74 -0.23 -17.02 16 21 C -0.52 -14.67 8.86 -37.43 -0.33 -15.00 16 22 H 0.07 1.83 6.02 -52.48 -0.32 1.51 16 23 C 0.08 2.22 5.50 -17.31 -0.10 2.12 16 24 N -0.74 -21.68 11.73 55.57 0.65 -21.03 16 25 Si 0.90 19.65 29.56 -169.99 -5.03 14.62 16 26 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 27 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 28 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 29 C -0.10 -1.58 5.27 -26.29 -0.14 -1.72 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.03 0.24 6.88 -51.93 -0.36 -0.12 16 33 H 0.08 0.83 7.03 -51.93 -0.37 0.47 16 34 H 0.06 0.58 8.01 -51.93 -0.42 0.17 16 35 H 0.07 0.77 6.52 -51.93 -0.34 0.43 16 36 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 37 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.07 1.01 6.85 -51.93 -0.36 0.65 16 39 H 0.12 1.77 4.82 -52.49 -0.25 1.52 16 40 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 41 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 42 H 0.13 2.64 6.21 -52.48 -0.33 2.32 16 43 H 0.27 7.15 8.29 -40.82 -0.34 6.82 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 345.91 15.07 5.21 5.21 Total: -1.00 -33.74 345.91 -10.68 -44.41 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.28 Total: 5.36 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: -3.52 Total: -18.04 kcal Atomic # 7 Polarization: -27.79 SS G_CDS: -0.52 Total: -28.31 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.55 Total: -23.26 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.74 -10.68 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.945 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds