Wall clock time and date at job start Tue Mar 31 2020 11:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.48719 * 111.00131 * 2 1 4 4 H 1.09004 * 112.23315 * 44.77977 * 3 2 1 5 5 C 1.54601 * 104.22271 * 282.48731 * 3 2 1 6 6 C 1.54284 * 104.84396 * 334.82058 * 5 3 2 7 7 C 1.48718 * 111.00127 * 245.53161 * 2 1 3 8 8 H 1.09002 * 112.23430 * 315.84603 * 7 2 1 9 9 C 1.53705 * 107.24036 * 191.65525 * 7 2 1 10 10 C 1.53138 * 108.88931 * 295.91433 * 9 7 2 11 11 H 1.08998 * 109.42405 * 293.93244 * 10 9 7 12 12 O 1.42898 * 109.42698 * 174.09311 * 10 9 7 13 13 C 1.35634 * 117.00270 * 84.89490 * 12 10 9 14 14 C 1.38679 * 120.15775 * 354.46326 * 13 12 10 15 15 C 1.38086 * 120.08953 * 179.97438 * 14 13 12 16 16 C 1.38687 * 120.41670 * 359.97438 * 15 14 13 17 17 C 1.37699 * 120.32434 * 359.97438 * 16 15 14 18 18 C 1.39846 * 119.89992 * 359.76800 * 17 16 15 19 19 C 1.47533 * 120.20556 * 180.25498 * 18 17 16 20 20 O 1.21810 * 119.99790 * 180.23485 * 19 18 17 21 21 C 1.41828 * 120.00156 * 0.22851 * 19 18 17 22 22 H 1.08003 * 120.00074 * 0.02562 * 21 19 18 23 23 C 1.40323 * 120.00299 * 179.97438 * 21 19 18 24 24 N 1.30547 * 119.99724 * 0.02562 * 23 21 19 25 25 Si 1.86797 * 120.00426 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46827 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46991 * 120.00100 * 25 23 21 28 28 H 1.48497 * 109.47567 * 240.00470 * 25 23 21 29 29 C 1.53133 * 109.72928 * 54.01608 * 10 9 7 30 30 H 1.09001 * 109.47222 * 174.46596 * 1 2 3 31 31 H 1.09003 * 109.46945 * 294.46937 * 1 2 3 32 32 H 1.09006 * 109.46682 * 54.46661 * 1 2 3 33 33 H 1.09000 * 110.36475 * 215.97706 * 5 3 2 34 34 H 1.09000 * 110.36558 * 93.66287 * 5 3 2 35 35 H 1.08995 * 110.36443 * 241.15780 * 6 5 3 36 36 H 1.09002 * 110.36449 * 118.84113 * 6 5 3 37 37 H 1.09000 * 109.56628 * 55.73455 * 9 7 2 38 38 H 1.08999 * 109.56894 * 176.09029 * 9 7 2 39 39 H 1.07994 * 119.95450 * 359.97438 * 14 13 12 40 40 H 1.07999 * 119.79031 * 179.97438 * 15 14 13 41 41 H 1.08009 * 119.83842 * 179.97438 * 16 15 14 42 42 H 1.08008 * 120.05100 * 180.02562 * 17 16 15 43 43 H 0.97000 * 119.99551 * 179.97438 * 24 23 21 44 44 H 1.09003 * 109.56792 * 186.16668 * 29 10 9 45 45 H 1.09004 * 109.67106 * 65.86407 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0020 1.3884 0.0000 4 1 1.4812 2.0301 0.7107 5 6 1.8357 1.8591 -1.4632 6 6 1.8357 0.5618 -2.2982 7 6 2.0020 -0.5751 -1.2637 8 1 1.4740 -1.4817 -1.5592 9 6 3.5075 -0.8077 -1.0590 10 6 4.1938 0.5447 -0.8462 11 1 4.1261 1.1334 -1.7610 12 8 5.5686 0.3337 -0.5184 13 6 6.4311 0.1759 -1.5532 14 6 5.9542 0.1077 -2.8536 15 6 6.8336 -0.0524 -3.9060 16 6 8.1976 -0.1456 -3.6733 17 6 8.6899 -0.0789 -2.3890 18 6 7.8118 0.0885 -1.3136 19 6 8.3324 0.1664 0.0646 20 8 7.5637 0.3080 0.9988 21 6 9.7278 0.0765 0.3017 22 1 10.4094 -0.0487 -0.5267 23 6 10.2230 0.1512 1.6125 24 7 9.3993 0.3030 2.6138 25 14 12.0608 0.0320 1.9249 26 1 12.7726 -0.1367 0.6326 27 1 12.5313 1.2734 2.5904 28 1 12.3396 -1.1350 2.8000 29 6 3.5076 1.2984 0.2967 30 1 -0.3634 -1.0229 -0.0991 31 1 -0.3633 0.4257 0.9354 32 1 -0.3633 0.5973 -0.8364 33 1 2.6703 2.4972 -1.7536 34 1 0.8912 2.3893 -1.5860 35 1 2.6703 0.5619 -2.9992 36 1 0.8912 0.4540 -2.8316 37 1 3.6637 -1.4381 -0.1836 38 1 3.9250 -1.2942 -1.9405 39 1 4.8935 0.1798 -3.0434 40 1 6.4569 -0.1054 -4.9168 41 1 8.8771 -0.2712 -4.5034 42 1 9.7531 -0.1516 -2.2129 43 1 9.7416 0.3543 3.5199 44 1 3.9250 2.3023 0.3743 45 1 3.6637 0.7645 1.2341 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233522922.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:20 Heat of formation + Delta-G solvation = -60.193613 kcal Electronic energy + Delta-G solvation = -27102.869216 eV Core-core repulsion = 23470.650783 eV Total energy + Delta-G solvation = -3632.218432 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.20942 -40.64190 -38.55407 -37.78128 -34.71928 -33.80765 -32.52326 -32.08294 -31.66571 -30.38734 -28.71044 -26.99278 -25.36351 -24.51169 -24.07838 -22.39916 -21.65359 -21.30461 -19.78002 -19.17941 -18.47095 -17.66576 -17.29604 -16.72876 -16.13390 -16.00909 -15.88541 -15.38411 -15.16054 -15.01645 -14.90095 -14.78786 -14.28607 -14.07251 -13.69920 -13.62528 -13.53217 -13.44099 -13.24548 -13.00013 -12.75951 -12.66802 -12.62231 -12.33192 -12.31183 -12.09466 -11.99719 -11.91730 -11.63433 -11.36598 -11.35126 -11.20726 -10.97644 -9.71593 -9.48191 -9.44254 -8.94166 -8.26117 -7.00022 0.28027 0.62925 1.36856 1.37369 1.55733 2.22334 2.30574 2.41205 2.90688 2.93737 3.55833 3.60758 3.81903 3.82795 3.91643 3.95269 4.01610 4.03727 4.07027 4.15551 4.28598 4.33475 4.41324 4.47768 4.50469 4.57726 4.64673 4.70365 4.72365 4.89052 4.92842 4.97622 4.98846 5.00014 5.06707 5.10947 5.19010 5.23444 5.25464 5.26090 5.45617 5.56311 5.72996 5.83588 5.98282 6.09850 6.15140 6.71070 6.75844 6.93957 8.35893 8.57980 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.017865 B = 0.003920 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.920007 B = 7141.431121 C = 8342.322808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.532 5.532 3 C 0.075 3.925 4 H 0.111 0.889 5 C -0.149 4.149 6 C -0.148 4.148 7 C 0.073 3.927 8 H 0.114 0.886 9 C -0.127 4.127 10 C 0.079 3.921 11 H 0.085 0.915 12 O -0.309 6.309 13 C 0.134 3.866 14 C -0.225 4.225 15 C -0.071 4.071 16 C -0.169 4.169 17 C -0.063 4.063 18 C -0.198 4.198 19 C 0.365 3.635 20 O -0.573 6.573 21 C -0.552 4.552 22 H 0.092 0.908 23 C 0.022 3.978 24 N -0.794 5.794 25 Si 0.995 3.005 26 H -0.242 1.242 27 H -0.265 1.265 28 H -0.266 1.266 29 C -0.103 4.103 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.147 0.853 40 H 0.165 0.835 41 H 0.157 0.843 42 H 0.132 0.868 43 H 0.279 0.721 44 H 0.063 0.937 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.479 0.809 -13.948 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.255 5.255 3 C -0.033 4.033 4 H 0.129 0.871 5 C -0.188 4.188 6 C -0.186 4.186 7 C -0.036 4.036 8 H 0.132 0.868 9 C -0.165 4.165 10 C 0.023 3.977 11 H 0.103 0.897 12 O -0.222 6.222 13 C 0.087 3.913 14 C -0.244 4.244 15 C -0.088 4.088 16 C -0.187 4.187 17 C -0.081 4.081 18 C -0.199 4.199 19 C 0.263 3.737 20 O -0.465 6.465 21 C -0.583 4.583 22 H 0.110 0.890 23 C -0.196 4.196 24 N -0.423 5.423 25 Si 0.814 3.186 26 H -0.165 1.165 27 H -0.190 1.190 28 H -0.191 1.191 29 C -0.142 4.142 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.165 0.835 40 H 0.182 0.818 41 H 0.174 0.826 42 H 0.150 0.850 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.760 0.574 -12.635 19.438 hybrid contribution 0.641 0.374 0.119 0.752 sum -14.119 0.948 -12.516 18.892 Atomic orbital electron populations 1.22495 0.86316 1.02630 1.01793 1.65365 1.09724 1.15486 1.34923 1.22972 0.92508 0.90326 0.97539 0.87107 1.22964 1.03225 0.98229 0.94413 1.22977 1.03500 0.93847 0.98308 1.23010 0.93122 0.98824 0.88624 0.86847 1.22198 0.95982 0.96453 1.01863 1.22771 0.78726 0.97088 0.99117 0.89702 1.86468 1.18396 1.85315 1.32039 1.19683 0.89425 0.94420 0.87752 1.21425 1.01550 1.10594 0.90815 1.21432 0.92633 0.95440 0.99336 1.21359 0.96491 1.04670 0.96185 1.21476 0.99575 0.95250 0.91814 1.21264 0.91691 1.08170 0.98805 1.18770 0.90317 0.78448 0.86145 1.90487 1.60884 1.49323 1.45852 1.21450 0.94545 1.47830 0.94435 0.89023 1.27269 1.05757 0.91366 0.95201 1.70158 1.39099 1.32509 1.00561 0.85017 0.74865 0.78827 0.79933 1.16505 1.18988 1.19055 1.21696 0.95337 0.99462 0.97668 0.90706 0.91086 0.93685 0.91249 0.89273 0.90684 0.89122 0.93251 0.90560 0.83523 0.81765 0.82570 0.85024 0.91119 0.91880 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.45 127.69 1.21 1.46 16 2 N -0.53 -12.45 5.29 -853.41 -4.51 -16.96 16 3 C 0.08 1.77 3.68 45.35 0.17 1.94 16 4 H 0.11 2.30 8.11 -2.38 -0.02 2.28 16 5 C -0.15 -2.73 5.29 31.57 0.17 -2.56 16 6 C -0.15 -2.49 5.33 31.58 0.17 -2.32 16 7 C 0.07 1.57 3.68 45.35 0.17 1.74 16 8 H 0.11 2.04 8.10 -2.39 -0.02 2.02 16 9 C -0.13 -3.83 4.91 30.88 0.15 -3.68 16 10 C 0.08 2.75 1.76 30.69 0.05 2.80 16 11 H 0.09 2.57 3.70 -2.39 -0.01 2.56 16 12 O -0.31 -15.19 7.88 -68.60 -0.54 -15.73 16 13 C 0.13 6.16 6.62 22.90 0.15 6.31 16 14 C -0.23 -7.57 8.29 22.34 0.19 -7.39 16 15 C -0.07 -1.97 10.03 22.34 0.22 -1.75 16 16 C -0.17 -5.21 10.02 22.25 0.22 -4.99 16 17 C -0.06 -2.60 9.43 22.53 0.21 -2.38 16 18 C -0.20 -10.20 5.90 -19.91 -0.12 -10.32 16 19 C 0.37 23.09 6.91 25.61 0.18 23.27 16 20 O -0.57 -41.02 13.71 16.17 0.22 -40.80 16 21 C -0.55 -32.70 8.86 23.67 0.21 -32.49 16 22 H 0.09 4.83 6.02 -2.91 -0.02 4.81 16 23 C 0.02 1.24 5.50 85.39 0.47 1.71 16 24 N -0.79 -49.79 11.73 21.88 0.26 -49.53 16 25 Si 1.00 41.39 29.56 68.60 2.03 43.42 16 26 H -0.24 -9.24 7.11 99.48 0.71 -8.53 16 27 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 28 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 29 C -0.10 -3.50 5.27 30.88 0.16 -3.33 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.04 0.60 6.88 -2.38 -0.02 0.58 16 33 H 0.07 1.38 7.03 -2.39 -0.02 1.37 16 34 H 0.09 1.25 8.01 -2.39 -0.02 1.23 16 35 H 0.07 1.27 6.52 -2.39 -0.02 1.25 16 36 H 0.09 1.13 8.10 -2.39 -0.02 1.11 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.08 2.15 6.85 -2.39 -0.02 2.13 16 39 H 0.15 3.96 4.82 -2.91 -0.01 3.95 16 40 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 41 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 42 H 0.13 5.26 6.21 -2.91 -0.02 5.25 16 43 H 0.28 15.62 8.29 -92.71 -0.77 14.85 16 44 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -84.37 345.91 2.44 -81.93 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 1.01 Total: 29.65 kcal Atomic # 6 Polarization: -35.95 SS G_CDS: 3.98 Total: -31.97 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -4.26 Total: -66.49 kcal Atomic # 8 Polarization: -56.21 SS G_CDS: -0.32 Total: -56.53 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -84.37 2.44 -81.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233522922.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.732 kcal (2) G-P(sol) polarization free energy of solvation -84.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds