Wall clock time and date at job start Tue Mar 31 2020 11:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34238 * 116.99792 * 2 1 4 4 O 1.20823 * 120.00005 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99635 * 180.02562 * 3 2 1 6 6 H 1.08996 * 110.82373 * 22.37870 * 5 3 2 7 7 C 1.55090 * 110.76337 * 145.73577 * 5 3 2 8 8 N 1.48587 * 103.33948 * 155.14089 * 7 5 3 9 9 C 1.46908 * 110.99683 * 200.62202 * 8 7 5 10 10 C 1.50704 * 109.46844 * 173.97343 * 9 8 7 11 11 C 1.37633 * 120.12680 * 254.36733 * 10 9 8 12 12 C 1.38611 * 120.24900 * 179.97438 * 11 10 9 13 13 C 1.38652 * 120.49988 * 359.97438 * 12 11 10 14 14 C 1.37594 * 120.25174 * 0.02562 * 13 12 11 15 15 C 1.40700 * 120.12665 * 74.34640 * 10 9 8 16 16 C 1.41387 * 120.24427 * 0.04438 * 15 10 9 17 17 H 1.07997 * 120.00466 * 326.21536 * 16 15 10 18 18 C 1.39951 * 119.99772 * 146.22022 * 16 15 10 19 19 N 1.30814 * 119.99962 * 1.39237 * 18 16 15 20 20 Si 1.86802 * 119.99827 * 181.39587 * 18 16 15 21 21 H 1.48503 * 109.47154 * 59.99890 * 20 18 16 22 22 H 1.48500 * 109.47349 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47124 * 299.99926 * 20 18 16 24 24 C 1.48095 * 105.87077 * 321.16429 * 8 7 5 25 25 C 1.53371 * 106.75269 * 25.20766 * 24 8 7 26 26 C 1.52295 * 121.61668 * 142.45335 * 25 24 8 27 27 C 1.52311 * 121.59775 * 214.81718 * 25 24 8 28 28 H 1.09001 * 109.47137 * 59.99369 * 1 2 3 29 29 H 1.08993 * 109.46899 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46716 * 300.00178 * 1 2 3 31 31 H 1.09004 * 110.64158 * 36.67700 * 7 5 3 32 32 H 1.08994 * 110.78401 * 273.67308 * 7 5 3 33 33 H 1.08993 * 109.47104 * 53.97418 * 9 8 7 34 34 H 1.09001 * 109.46826 * 293.96784 * 9 8 7 35 35 H 1.08004 * 119.87936 * 359.95883 * 11 10 9 36 36 H 1.08008 * 119.74732 * 179.97438 * 12 11 10 37 37 H 1.08002 * 119.87339 * 180.27865 * 13 12 11 38 38 H 1.08001 * 120.12687 * 179.97438 * 14 13 12 39 39 H 0.97008 * 119.99914 * 180.02562 * 19 18 16 40 40 H 1.08994 * 110.00405 * 144.53493 * 24 8 7 41 41 H 1.09010 * 110.00114 * 265.88551 * 24 8 7 42 42 H 1.09000 * 117.51976 * 218.39085 * 26 25 24 43 43 H 1.09001 * 117.51931 * 3.51933 * 26 25 24 44 44 H 1.09003 * 117.51521 * 356.44225 * 27 25 24 45 45 H 1.08996 * 117.51761 * 141.57810 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 4.0025 0.3545 -0.3888 7 6 4.0524 2.5007 -0.8170 8 7 5.3873 2.7936 -0.2338 9 6 5.7947 4.1759 -0.5193 10 6 7.0782 4.4818 0.2089 11 6 7.0636 5.2833 1.3277 12 6 8.2425 5.5659 1.9997 13 6 9.4482 5.0456 1.5547 14 6 9.4867 4.2420 0.4385 15 6 8.2960 3.9488 -0.2522 16 6 8.3233 3.1246 -1.4006 17 1 7.4934 2.4670 -1.6133 18 6 9.4258 3.1609 -2.2619 19 7 10.4430 3.9371 -1.9899 20 14 9.4448 2.1009 -3.7999 21 1 8.2983 2.4691 -4.6690 22 1 10.7149 2.3210 -4.5372 23 1 9.3359 0.6704 -3.4165 24 6 5.2501 2.5710 1.2239 25 6 4.0976 1.5769 1.4128 26 6 4.1421 0.4976 2.4863 27 6 3.1566 1.6636 2.6072 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.3786 3.3463 -0.6786 32 1 4.1413 2.2507 -1.8742 33 1 5.0154 4.8607 -0.1852 34 1 5.9482 4.2952 -1.5918 35 1 6.1300 5.6938 1.6832 36 1 8.2217 6.1961 2.8765 37 1 10.3601 5.2686 2.0886 38 1 10.4270 3.8381 0.0934 39 1 11.2071 3.9625 -2.5870 40 1 6.1729 2.1528 1.6257 41 1 5.0174 3.5111 1.7243 42 1 3.7352 -0.4815 2.2333 43 1 4.9998 0.4913 3.1589 44 1 3.3663 2.4242 3.3594 45 1 2.1016 1.4514 2.4337 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235529008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:07 Heat of formation + Delta-G solvation = -29.613547 kcal Electronic energy + Delta-G solvation = -26760.572393 eV Core-core repulsion = 23129.680011 eV Total energy + Delta-G solvation = -3630.892381 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.97558 -39.08642 -37.60001 -36.48305 -35.35788 -33.49289 -31.69501 -29.71991 -29.28210 -27.70378 -27.04096 -25.38798 -24.22147 -22.56986 -22.09119 -20.93610 -20.62249 -19.53279 -19.05189 -17.69300 -17.05934 -16.58827 -16.52563 -15.53767 -15.11489 -15.06751 -14.55745 -14.35964 -13.94006 -13.80670 -13.35476 -13.22525 -12.95380 -12.86440 -12.53263 -12.38100 -12.14500 -11.79568 -11.56804 -11.50839 -11.37680 -11.09801 -11.00676 -10.99512 -10.94176 -10.77087 -10.57307 -10.44251 -10.33342 -10.25190 -9.70728 -9.49590 -9.31734 -9.05470 -7.84422 -7.33700 -7.15700 -6.54705 -4.28315 2.08219 2.54014 2.84478 3.00681 3.14146 3.17780 3.29911 3.73179 4.04679 4.35001 4.38622 4.69129 4.74439 4.79554 4.89079 4.92423 4.96229 5.03105 5.27746 5.34236 5.56332 5.60199 5.71685 5.74857 5.87552 5.92038 5.93170 6.02807 6.08554 6.13233 6.16354 6.23456 6.31265 6.41723 6.49618 6.57374 6.87242 7.19865 7.32545 7.36739 7.44803 7.59864 7.66228 7.72523 7.95463 8.12941 8.24187 8.39699 8.79054 9.03840 9.08409 10.37115 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.004270 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.091928 B = 6556.047116 C = 7830.514728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.473 3.527 4 O -0.503 6.503 5 C -0.053 4.053 6 H 0.117 0.883 7 C 0.048 3.952 8 N -0.492 5.492 9 C 0.118 3.882 10 C -0.192 4.192 11 C -0.092 4.092 12 C -0.237 4.237 13 C -0.112 4.112 14 C -0.154 4.154 15 C 0.128 3.872 16 C -0.447 4.447 17 H 0.093 0.907 18 C 0.068 3.932 19 N -0.814 5.814 20 Si 0.911 3.089 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.266 1.266 24 C 0.086 3.914 25 C -0.123 4.123 26 C -0.157 4.157 27 C -0.170 4.170 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.019 0.981 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.125 0.875 39 H 0.276 0.724 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.098 0.902 43 H 0.103 0.897 44 H 0.100 0.900 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.479 -7.453 3.742 15.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.315 3.685 4 O -0.390 6.390 5 C -0.072 4.072 6 H 0.135 0.865 7 C -0.080 4.080 8 N -0.216 5.216 9 C -0.008 4.008 10 C -0.194 4.194 11 C -0.111 4.111 12 C -0.256 4.256 13 C -0.130 4.130 14 C -0.173 4.173 15 C 0.125 3.875 16 C -0.478 4.478 17 H 0.111 0.889 18 C -0.147 4.147 19 N -0.442 5.442 20 Si 0.737 3.263 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.190 1.190 24 C -0.041 4.041 25 C -0.124 4.124 26 C -0.194 4.194 27 C -0.207 4.207 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.038 0.962 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.143 0.857 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.116 0.884 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.074 -7.411 3.382 15.404 hybrid contribution -0.746 0.295 -0.353 0.876 sum -13.820 -7.116 3.029 15.837 Atomic orbital electron populations 1.23249 0.76705 1.03554 1.02479 1.86556 1.23170 1.33738 1.84105 1.23694 0.91871 0.81206 0.71700 1.90651 1.67019 1.36342 1.44955 1.21484 0.85989 1.02836 0.96920 0.86495 1.23203 0.91369 0.94603 0.98811 1.65040 1.22400 1.25905 1.08241 1.20821 0.93760 0.85555 1.00697 1.19540 0.94334 1.05380 1.00110 1.20379 0.95931 0.99027 0.95757 1.20337 0.93343 1.08984 1.02961 1.20745 0.95708 0.99081 0.97498 1.21603 0.99904 1.01367 0.94450 1.17411 0.89691 0.89491 0.90921 1.19750 1.02662 1.20211 1.05138 0.88899 1.25939 0.94536 0.94463 0.99722 1.69769 1.05843 1.32429 1.36120 0.86319 0.77978 0.80896 0.81127 1.19218 1.20788 1.19038 1.22169 0.95655 0.95976 0.90335 1.21676 1.00056 1.02299 0.88400 1.22978 1.01687 0.93802 1.00929 1.23003 0.95822 1.01835 1.00084 0.91913 0.88177 0.92046 0.92421 0.89418 0.96234 0.90161 0.89995 0.89832 0.89690 0.85690 0.91316 0.89399 0.93168 0.88398 0.87839 0.88125 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -4.26 10.57 -39.28 -0.42 -4.67 16 3 C 0.47 6.49 5.39 36.01 0.19 6.68 16 4 O -0.50 -8.02 15.74 -18.75 -0.30 -8.32 16 5 C -0.05 -0.73 3.44 -90.16 -0.31 -1.04 16 6 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 7 C 0.05 0.75 5.94 -1.78 -0.01 0.74 16 8 N -0.49 -8.96 4.64 -231.97 -1.08 -10.04 16 9 C 0.12 2.37 4.25 -4.97 -0.02 2.35 16 10 C -0.19 -4.39 4.51 -103.91 -0.47 -4.86 16 11 C -0.09 -2.02 8.99 -39.66 -0.36 -2.37 16 12 C -0.24 -5.26 10.05 -39.29 -0.39 -5.66 16 13 C -0.11 -2.62 10.02 -39.66 -0.40 -3.01 16 14 C -0.15 -3.95 8.66 -38.87 -0.34 -4.29 16 15 C 0.13 3.25 5.55 -106.83 -0.59 2.66 16 16 C -0.45 -11.39 8.08 -37.74 -0.31 -11.69 16 17 H 0.09 2.31 6.81 -52.49 -0.36 1.95 16 18 C 0.07 1.69 5.40 -17.34 -0.09 1.60 16 19 N -0.81 -21.03 10.64 55.55 0.59 -20.44 16 20 Si 0.91 18.97 29.56 -169.99 -5.02 13.94 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 24 C 0.09 1.46 5.48 -2.97 -0.02 1.44 16 25 C -0.12 -1.73 2.39 -154.52 -0.37 -2.10 16 26 C -0.16 -1.84 10.29 -27.01 -0.28 -2.12 16 27 C -0.17 -2.12 9.69 -27.01 -0.26 -2.38 16 28 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 31 H 0.06 0.95 7.06 -51.93 -0.37 0.58 16 32 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.02 0.37 7.78 -51.93 -0.40 -0.03 16 34 H 0.08 1.68 7.73 -51.93 -0.40 1.28 16 35 H 0.08 1.62 7.99 -52.48 -0.42 1.20 16 36 H 0.08 1.66 8.06 -52.48 -0.42 1.24 16 37 H 0.08 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.13 3.36 6.17 -52.49 -0.32 3.04 16 39 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 40 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 41 H 0.05 0.88 7.18 -51.92 -0.37 0.50 16 42 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.09 1.08 6.93 -51.93 -0.36 0.72 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -28.08 366.48 -10.44 -38.52 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.79 Total: 8.16 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -2.95 Total: -22.68 kcal Atomic # 7 Polarization: -29.99 SS G_CDS: -0.49 Total: -30.48 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.71 Total: -12.99 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.94 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.08 -10.44 -38.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235529008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.910 kcal (2) G-P(sol) polarization free energy of solvation -28.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds