Wall clock time and date at job start Tue Mar 31 2020 11:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34238 * 116.99792 * 2 1 4 4 O 1.20823 * 120.00005 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99635 * 180.02562 * 3 2 1 6 6 H 1.08996 * 110.82373 * 22.37870 * 5 3 2 7 7 C 1.55090 * 110.76337 * 145.73577 * 5 3 2 8 8 N 1.48587 * 103.33948 * 155.14089 * 7 5 3 9 9 C 1.46908 * 110.99683 * 200.62202 * 8 7 5 10 10 C 1.50704 * 109.46844 * 173.97343 * 9 8 7 11 11 C 1.37633 * 120.12680 * 254.36733 * 10 9 8 12 12 C 1.38611 * 120.24900 * 179.97438 * 11 10 9 13 13 C 1.38652 * 120.49988 * 359.97438 * 12 11 10 14 14 C 1.37594 * 120.25174 * 0.02562 * 13 12 11 15 15 C 1.40700 * 120.12665 * 74.34640 * 10 9 8 16 16 C 1.41387 * 120.24427 * 0.04438 * 15 10 9 17 17 H 1.07997 * 120.00466 * 326.21536 * 16 15 10 18 18 C 1.39951 * 119.99772 * 146.22022 * 16 15 10 19 19 N 1.30814 * 119.99962 * 1.39237 * 18 16 15 20 20 Si 1.86802 * 119.99827 * 181.39587 * 18 16 15 21 21 H 1.48503 * 109.47154 * 59.99890 * 20 18 16 22 22 H 1.48500 * 109.47349 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47124 * 299.99926 * 20 18 16 24 24 C 1.48095 * 105.87077 * 321.16429 * 8 7 5 25 25 C 1.53371 * 106.75269 * 25.20766 * 24 8 7 26 26 C 1.52295 * 121.61668 * 142.45335 * 25 24 8 27 27 C 1.52311 * 121.59775 * 214.81718 * 25 24 8 28 28 H 1.09001 * 109.47137 * 59.99369 * 1 2 3 29 29 H 1.08993 * 109.46899 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46716 * 300.00178 * 1 2 3 31 31 H 1.09004 * 110.64158 * 36.67700 * 7 5 3 32 32 H 1.08994 * 110.78401 * 273.67308 * 7 5 3 33 33 H 1.08993 * 109.47104 * 53.97418 * 9 8 7 34 34 H 1.09001 * 109.46826 * 293.96784 * 9 8 7 35 35 H 1.08004 * 119.87936 * 359.95883 * 11 10 9 36 36 H 1.08008 * 119.74732 * 179.97438 * 12 11 10 37 37 H 1.08002 * 119.87339 * 180.27865 * 13 12 11 38 38 H 1.08001 * 120.12687 * 179.97438 * 14 13 12 39 39 H 0.97008 * 119.99914 * 180.02562 * 19 18 16 40 40 H 1.08994 * 110.00405 * 144.53493 * 24 8 7 41 41 H 1.09010 * 110.00114 * 265.88551 * 24 8 7 42 42 H 1.09000 * 117.51976 * 218.39085 * 26 25 24 43 43 H 1.09001 * 117.51931 * 3.51933 * 26 25 24 44 44 H 1.09003 * 117.51521 * 356.44225 * 27 25 24 45 45 H 1.08996 * 117.51761 * 141.57810 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 1 4.0025 0.3545 -0.3888 7 6 4.0524 2.5007 -0.8170 8 7 5.3873 2.7936 -0.2338 9 6 5.7947 4.1759 -0.5193 10 6 7.0782 4.4818 0.2089 11 6 7.0636 5.2833 1.3277 12 6 8.2425 5.5659 1.9997 13 6 9.4482 5.0456 1.5547 14 6 9.4867 4.2420 0.4385 15 6 8.2960 3.9488 -0.2522 16 6 8.3233 3.1246 -1.4006 17 1 7.4934 2.4670 -1.6133 18 6 9.4258 3.1609 -2.2619 19 7 10.4430 3.9371 -1.9899 20 14 9.4448 2.1009 -3.7999 21 1 8.2983 2.4691 -4.6690 22 1 10.7149 2.3210 -4.5372 23 1 9.3359 0.6704 -3.4165 24 6 5.2501 2.5710 1.2239 25 6 4.0976 1.5769 1.4128 26 6 4.1421 0.4976 2.4863 27 6 3.1566 1.6636 2.6072 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 3.3786 3.3463 -0.6786 32 1 4.1413 2.2507 -1.8742 33 1 5.0154 4.8607 -0.1852 34 1 5.9482 4.2952 -1.5918 35 1 6.1300 5.6938 1.6832 36 1 8.2217 6.1961 2.8765 37 1 10.3601 5.2686 2.0886 38 1 10.4270 3.8381 0.0934 39 1 11.2071 3.9625 -2.5870 40 1 6.1729 2.1528 1.6257 41 1 5.0174 3.5111 1.7243 42 1 3.7352 -0.4815 2.2333 43 1 4.9998 0.4913 3.1589 44 1 3.3663 2.4242 3.3594 45 1 2.1016 1.4514 2.4337 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235529008.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:06 Heat of formation + Delta-G solvation = -42.963943 kcal Electronic energy + Delta-G solvation = -26761.151309 eV Core-core repulsion = 23129.680011 eV Total energy + Delta-G solvation = -3631.471298 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.05371 -40.33774 -39.23445 -37.50500 -36.66464 -35.35605 -33.12522 -31.36610 -30.91683 -28.61908 -28.39008 -27.14175 -25.69018 -23.55373 -23.32993 -22.73188 -21.90110 -21.19644 -20.20390 -18.94265 -18.70611 -17.62434 -17.58070 -17.10504 -16.55992 -16.25245 -16.16067 -15.65349 -15.48498 -15.24295 -14.64706 -14.44502 -14.31317 -14.22683 -14.04242 -13.70097 -13.35748 -13.19434 -13.00916 -12.90578 -12.75238 -12.67855 -12.52364 -12.34201 -12.26182 -12.10381 -12.00406 -11.83382 -11.62824 -11.38211 -11.32286 -11.13499 -10.89715 -10.76567 -9.30973 -9.15252 -9.01645 -8.40178 -6.21719 1.00897 1.03995 1.17060 1.44012 1.54040 1.59254 1.62436 2.30554 2.72588 2.89773 3.12214 3.27233 3.50087 3.69748 3.83753 3.91905 4.00941 4.16642 4.28884 4.31206 4.33000 4.37568 4.45813 4.51625 4.62765 4.67096 4.69557 4.69716 4.74508 4.82299 4.87251 4.90123 4.95323 5.07033 5.15548 5.17573 5.28044 5.34112 5.47302 5.60301 5.84898 5.91751 6.09055 6.18717 6.26412 6.36398 6.53208 6.64893 6.88009 7.14382 7.19288 8.53010 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.004270 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.091928 B = 6556.047116 C = 7830.514728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.481 3.519 4 O -0.529 6.529 5 C -0.048 4.048 6 H 0.128 0.872 7 C 0.050 3.950 8 N -0.506 5.506 9 C 0.126 3.874 10 C -0.190 4.190 11 C -0.096 4.096 12 C -0.234 4.234 13 C -0.119 4.119 14 C -0.183 4.183 15 C 0.100 3.900 16 C -0.469 4.469 17 H 0.091 0.909 18 C 0.026 3.974 19 N -0.848 5.848 20 Si 0.977 3.023 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.261 1.261 24 C 0.093 3.907 25 C -0.140 4.140 26 C -0.139 4.139 27 C -0.163 4.163 28 H 0.061 0.939 29 H 0.134 0.866 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.030 0.970 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.279 0.721 40 H 0.066 0.934 41 H 0.041 0.959 42 H 0.115 0.885 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.356 -8.634 4.236 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.325 3.675 4 O -0.418 6.418 5 C -0.067 4.067 6 H 0.146 0.854 7 C -0.078 4.078 8 N -0.229 5.229 9 C -0.001 4.001 10 C -0.192 4.192 11 C -0.115 4.115 12 C -0.253 4.253 13 C -0.137 4.137 14 C -0.203 4.203 15 C 0.098 3.902 16 C -0.499 4.499 17 H 0.110 0.890 18 C -0.185 4.185 19 N -0.476 5.476 20 Si 0.799 3.201 21 H -0.188 1.188 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.035 4.035 25 C -0.141 4.141 26 C -0.176 4.176 27 C -0.200 4.200 28 H 0.080 0.920 29 H 0.152 0.848 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.060 0.940 42 H 0.133 0.867 43 H 0.127 0.873 44 H 0.122 0.878 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.963 -8.607 3.892 17.695 hybrid contribution -0.245 0.700 -0.396 0.841 sum -15.208 -7.907 3.496 17.493 Atomic orbital electron populations 1.23585 0.74676 1.05840 1.02567 1.86535 1.25085 1.32403 1.83481 1.23499 0.91588 0.81378 0.71044 1.90645 1.67510 1.37305 1.46335 1.21386 0.86560 1.02262 0.96512 0.85437 1.23183 0.89857 0.95318 0.99418 1.64900 1.24223 1.24414 1.09394 1.20654 0.92865 0.87111 0.99440 1.19843 0.94653 1.04516 1.00201 1.20688 0.97053 0.98477 0.95294 1.20700 0.92775 1.08327 1.03488 1.20984 0.97238 0.98577 0.96948 1.21562 0.99409 1.03273 0.96019 1.17716 0.90629 0.90426 0.91479 1.19896 1.03239 1.20966 1.05844 0.89048 1.26717 0.93943 0.95417 1.02442 1.69869 1.06500 1.33911 1.37345 0.85318 0.78090 0.79200 0.77448 1.18752 1.20233 1.18539 1.22004 0.95933 0.96317 0.89257 1.21576 0.99925 1.03377 0.89254 1.23082 1.01446 0.93993 0.99087 1.23021 0.95787 1.02298 0.98889 0.91969 0.84833 0.91894 0.93211 0.88765 0.95216 0.91593 0.87492 0.86932 0.87860 0.87822 0.91079 0.91539 0.94039 0.86694 0.87305 0.87774 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.36 -7.60 10.57 -51.49 -0.54 -8.14 16 3 C 0.48 12.35 5.39 71.24 0.38 12.73 16 4 O -0.53 -16.18 15.74 21.97 0.35 -15.83 16 5 C -0.05 -1.25 3.44 -10.49 -0.04 -1.29 16 6 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 7 C 0.05 1.54 5.94 86.69 0.52 2.05 16 8 N -0.51 -18.42 4.64 -887.82 -4.12 -22.54 16 9 C 0.13 5.10 4.25 85.56 0.36 5.46 16 10 C -0.19 -8.78 4.51 -19.40 -0.09 -8.87 16 11 C -0.10 -4.13 8.99 22.22 0.20 -3.93 16 12 C -0.23 -10.07 10.05 22.46 0.23 -9.84 16 13 C -0.12 -5.58 10.02 22.22 0.22 -5.36 16 14 C -0.18 -9.70 8.66 22.73 0.20 -9.51 16 15 C 0.10 5.24 5.55 -21.29 -0.12 5.13 16 16 C -0.47 -24.57 8.08 23.46 0.19 -24.38 16 17 H 0.09 4.66 6.81 -2.91 -0.02 4.64 16 18 C 0.03 1.32 5.40 85.26 0.46 1.78 16 19 N -0.85 -45.25 10.64 21.83 0.23 -45.02 16 20 Si 0.98 39.40 29.56 68.60 2.03 41.43 16 21 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 22 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 24 C 0.09 3.10 5.48 86.20 0.47 3.57 16 25 C -0.14 -3.73 2.39 -52.19 -0.12 -3.86 16 26 C -0.14 -2.93 10.29 30.41 0.31 -2.62 16 27 C -0.16 -3.71 9.69 30.42 0.29 -3.42 16 28 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 29 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 31 H 0.05 1.61 7.06 -2.39 -0.02 1.59 16 32 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.03 1.12 7.78 -2.39 -0.02 1.10 16 34 H 0.07 2.82 7.73 -2.39 -0.02 2.81 16 35 H 0.11 4.01 7.99 -2.91 -0.02 3.99 16 36 H 0.11 4.16 8.06 -2.91 -0.02 4.14 16 37 H 0.10 4.34 8.06 -2.91 -0.02 4.31 16 38 H 0.10 5.86 6.17 -2.91 -0.02 5.84 16 39 H 0.28 13.78 8.30 -92.70 -0.77 13.01 16 40 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.04 1.43 7.18 -2.38 -0.02 1.41 16 42 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.09 2.01 6.93 -2.39 -0.02 1.99 16 Total: -1.00 -61.41 366.48 3.59 -57.82 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: 0.98 Total: 33.06 kcal Atomic # 6 Polarization: -45.44 SS G_CDS: 4.67 Total: -40.77 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: -3.89 Total: -67.56 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.20 Total: -23.98 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -61.41 3.59 -57.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235529008.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.853 kcal (2) G-P(sol) polarization free energy of solvation -61.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds