Wall clock time and date at job start Tue Mar 31 2020 11:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35887 * 116.99425 * 2 1 4 4 C 1.39824 * 119.57704 * 0.02562 * 3 2 1 5 5 C 1.36032 * 120.91534 * 179.97438 * 4 3 2 6 6 C 1.40463 * 119.74012 * 0.04562 * 5 4 3 7 7 C 1.40975 * 121.21444 * 180.02562 * 6 5 4 8 8 O 1.35797 * 120.22038 * 359.97438 * 7 6 5 9 9 C 1.42908 * 116.99865 * 180.02562 * 8 7 6 10 10 C 1.36657 * 119.55647 * 179.97438 * 7 6 5 11 11 C 1.39229 * 120.92964 * 359.97438 * 10 7 6 12 12 C 1.36142 * 121.04842 * 0.02562 * 11 10 7 13 13 C 1.50702 * 120.11006 * 180.27205 * 12 11 10 14 14 N 1.46893 * 109.47012 * 105.23253 * 13 12 11 15 15 C 1.46902 * 110.99734 * 288.00358 * 14 13 12 16 16 C 1.46896 * 111.00121 * 164.05479 * 14 13 12 17 17 C 1.50704 * 109.47375 * 189.99850 * 16 14 13 18 18 H 1.07998 * 119.99962 * 359.97438 * 17 16 14 19 19 C 1.37875 * 119.99966 * 179.97438 * 17 16 14 20 20 N 1.31513 * 120.00570 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99826 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47059 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46771 * 120.00176 * 21 19 17 24 24 H 1.48493 * 109.47218 * 240.00246 * 21 19 17 25 25 C 1.40598 * 119.77670 * 359.97438 * 12 11 10 26 26 C 1.36595 * 119.56950 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46752 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46792 * 299.99318 * 1 2 3 29 29 H 1.08996 * 109.47312 * 59.99667 * 1 2 3 30 30 H 1.08004 * 119.54681 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.12686 * 180.02562 * 5 4 3 32 32 H 1.08997 * 109.46971 * 180.02562 * 9 8 7 33 33 H 1.09002 * 109.46512 * 299.99798 * 9 8 7 34 34 H 1.08997 * 109.47156 * 60.00029 * 9 8 7 35 35 H 1.07998 * 119.53038 * 180.02562 * 10 7 6 36 36 H 1.07993 * 119.47314 * 180.02562 * 11 10 7 37 37 H 1.09003 * 109.46592 * 225.23209 * 13 12 11 38 38 H 1.09001 * 109.47309 * 345.22886 * 13 12 11 39 39 H 1.09000 * 109.47018 * 62.34079 * 15 14 13 40 40 H 1.09003 * 109.47270 * 182.33759 * 15 14 13 41 41 H 1.08996 * 109.47717 * 302.33988 * 15 14 13 42 42 H 1.09002 * 109.46946 * 309.99823 * 16 14 13 43 43 H 1.09000 * 109.47289 * 69.99808 * 16 14 13 44 44 H 0.96992 * 120.00588 * 180.02562 * 20 19 17 45 45 H 1.07996 * 120.19462 * 0.04245 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2756 2.3778 0.0005 5 6 1.8645 3.6040 0.0011 6 6 3.2656 3.7040 0.0001 7 6 3.9085 4.9586 0.0012 8 8 3.1759 6.1020 0.0026 9 6 3.8980 7.3352 0.0031 10 6 5.2738 5.0165 0.0007 11 6 6.0393 3.8536 -0.0002 12 6 5.4512 2.6257 -0.0013 13 6 6.3003 1.3807 0.0039 14 7 6.2698 0.7728 1.3408 15 6 7.0407 1.5739 2.3010 16 6 6.7567 -0.6125 1.3004 17 6 6.4843 -1.2796 2.6240 18 1 5.9984 -0.7293 3.4162 19 6 6.8553 -2.5924 2.8237 20 7 7.4473 -3.2624 1.8593 21 14 6.5182 -3.4190 4.4647 22 1 5.8475 -2.4565 5.3752 23 1 5.6380 -4.5964 4.2542 24 1 7.8005 -3.8613 5.0688 25 6 4.0490 2.5232 -0.0008 26 6 3.4104 1.2722 -0.0005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.1980 2.3046 0.0005 31 1 1.2572 4.4970 0.0019 32 1 3.1948 8.1680 0.0047 33 1 4.5256 7.3883 0.8927 34 1 4.5243 7.3898 -0.8873 35 1 5.7659 5.9779 0.0020 36 1 7.1168 3.9267 -0.0002 37 1 5.9102 0.6719 -0.7266 38 1 7.3271 1.6401 -0.2540 39 1 6.5904 2.5622 2.3938 40 1 7.0362 1.0799 3.2727 41 1 8.0674 1.6741 1.9492 42 1 6.2424 -1.1554 0.5073 43 1 7.8292 -0.6152 1.1062 44 1 7.7080 -4.1861 1.9996 45 1 3.9950 0.3641 -0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248825555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:14 Heat of formation + Delta-G solvation = -21.133923 kcal Electronic energy + Delta-G solvation = -26337.827227 eV Core-core repulsion = 22707.302550 eV Total energy + Delta-G solvation = -3630.524677 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.82110 -39.35413 -38.11866 -36.47623 -35.00445 -32.67304 -31.85129 -29.95093 -29.51495 -27.81815 -27.01148 -26.79073 -26.08881 -23.63689 -23.06367 -22.44362 -20.91084 -19.83121 -18.46202 -17.50992 -17.29985 -16.37149 -15.98491 -15.86889 -15.55796 -15.43573 -14.88448 -14.49369 -14.32245 -14.00503 -13.73675 -13.56883 -13.33416 -13.06079 -12.89509 -12.76383 -12.22373 -12.05562 -11.92457 -11.88074 -11.50627 -11.32293 -11.23293 -11.01407 -10.87237 -10.74646 -10.58625 -10.52943 -10.38474 -10.27825 -9.77767 -9.17748 -9.05932 -8.38871 -8.15384 -7.27516 -7.09041 -5.97347 -3.97836 0.81169 1.19301 2.28085 3.14976 3.16089 3.34924 3.42218 3.47571 3.47820 4.27404 4.49143 4.76014 4.81812 4.93328 4.97385 4.99116 5.07477 5.18431 5.18780 5.22524 5.29032 5.30830 5.38867 5.49100 5.51632 5.54887 5.73722 5.82195 5.97557 6.13768 6.20982 6.25711 6.32401 6.37859 6.43523 6.52379 6.60345 6.68952 6.82484 6.92805 7.06807 7.34374 7.39588 7.41282 7.61032 7.86552 8.13970 8.26353 8.60694 9.10238 9.66127 11.13576 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.004180 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.450570 B = 6696.481918 C = 8331.568758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.126 3.874 4 C -0.198 4.198 5 C -0.058 4.058 6 C -0.098 4.098 7 C 0.140 3.860 8 O -0.317 6.317 9 C 0.029 3.971 10 C -0.225 4.225 11 C -0.077 4.077 12 C -0.084 4.084 13 C 0.092 3.908 14 N -0.532 5.532 15 C 0.039 3.961 16 C 0.192 3.808 17 C -0.502 4.502 18 H 0.064 0.936 19 C 0.055 3.945 20 N -0.899 5.899 21 Si 0.896 3.104 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.286 1.286 25 C 0.035 3.965 26 C -0.127 4.127 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.033 0.967 39 H 0.045 0.955 40 H 0.074 0.926 41 H 0.009 0.991 42 H 0.030 0.970 43 H -0.009 1.009 44 H 0.260 0.740 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.560 17.837 -6.305 21.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.081 3.919 4 C -0.217 4.217 5 C -0.076 4.076 6 C -0.099 4.099 7 C 0.095 3.905 8 O -0.230 6.230 9 C -0.066 4.066 10 C -0.244 4.244 11 C -0.096 4.096 12 C -0.085 4.085 13 C -0.036 4.036 14 N -0.256 5.256 15 C -0.110 4.110 16 C 0.067 3.933 17 C -0.541 4.541 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.539 5.539 21 Si 0.724 3.276 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.212 1.212 25 C 0.034 3.966 26 C -0.145 4.145 27 H 0.116 0.884 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.027 0.973 42 H 0.048 0.952 43 H 0.008 0.992 44 H 0.069 0.931 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.102 17.465 -6.180 21.598 hybrid contribution 0.749 -0.193 0.663 1.019 sum -10.353 17.272 -5.517 20.879 Atomic orbital electron populations 1.23015 0.79078 1.03754 1.00877 1.86182 1.20788 1.26809 1.88706 1.18721 0.92325 0.83942 0.96876 1.20960 0.99919 0.92388 1.08413 1.20647 0.93179 0.97186 0.96594 1.17352 0.93547 0.90163 1.08813 1.18552 0.90028 0.85254 0.96699 1.85968 1.35667 1.12760 1.88602 1.23028 0.98041 0.84103 1.01475 1.20680 0.92409 0.99405 1.11939 1.20414 0.99491 0.91135 0.98526 1.19671 0.92393 0.95211 1.01203 1.20984 0.95961 0.92969 0.93707 1.62109 1.55187 1.04249 1.04052 1.22213 0.93882 0.96790 0.98102 1.19768 0.93366 0.82019 0.98137 1.21195 1.37810 0.96384 0.98723 0.91814 1.24969 0.95383 0.97329 0.96900 1.69963 1.41407 1.10311 1.32249 0.86475 0.77774 0.79446 0.83942 1.19680 1.21035 1.21210 1.17347 0.92485 0.90890 0.95837 1.20382 0.91413 0.98368 1.04361 0.88418 0.92856 0.93017 0.85614 0.85234 0.88470 0.92609 0.92667 0.85962 0.86183 0.90373 0.94862 0.93665 0.90753 0.97250 0.95162 0.99160 0.93061 0.83218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.80 101.05 0.99 1.28 16 2 O -0.31 -4.94 10.47 -19.39 -0.20 -5.14 16 3 C 0.13 2.05 6.63 -39.58 -0.26 1.79 16 4 C -0.20 -2.69 8.94 -39.78 -0.36 -3.05 16 5 C -0.06 -0.80 9.55 -39.54 -0.38 -1.18 16 6 C -0.10 -1.53 5.75 -106.70 -0.61 -2.14 16 7 C 0.14 1.96 6.67 -39.12 -0.26 1.70 16 8 O -0.32 -3.81 9.72 -19.10 -0.19 -4.00 16 9 C 0.03 0.22 9.81 101.05 0.99 1.21 16 10 C -0.23 -2.96 8.99 -39.78 -0.36 -3.32 16 11 C -0.08 -1.12 9.19 -39.97 -0.37 -1.48 16 12 C -0.08 -1.41 4.69 -104.49 -0.49 -1.90 16 13 C 0.09 1.71 4.27 -4.98 -0.02 1.68 16 14 N -0.53 -11.66 4.47 -245.83 -1.10 -12.76 16 15 C 0.04 0.79 9.23 60.07 0.55 1.34 16 16 C 0.19 5.03 4.71 -4.98 -0.02 5.01 16 17 C -0.50 -14.28 8.43 -34.44 -0.29 -14.57 16 18 H 0.06 1.82 7.14 -52.49 -0.37 1.44 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 21 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.03 0.60 5.74 -106.85 -0.61 -0.01 16 26 C -0.13 -2.29 9.16 -39.34 -0.36 -2.65 16 27 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.50 7.63 -51.93 -0.40 0.10 16 29 H 0.05 0.45 7.63 -51.93 -0.40 0.05 16 30 H 0.13 1.32 6.22 -52.48 -0.33 1.00 16 31 H 0.13 1.51 7.61 -52.49 -0.40 1.12 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.40 7.65 -51.93 -0.40 0.01 16 34 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 35 H 0.12 1.26 6.21 -52.49 -0.33 0.94 16 36 H 0.12 1.55 7.95 -52.49 -0.42 1.13 16 37 H 0.08 1.46 6.97 -51.93 -0.36 1.10 16 38 H 0.03 0.59 7.77 -51.93 -0.40 0.18 16 39 H 0.04 0.83 7.24 -51.93 -0.38 0.45 16 40 H 0.07 1.62 6.71 -51.93 -0.35 1.27 16 41 H 0.01 0.18 8.07 -51.93 -0.42 -0.24 16 42 H 0.03 0.84 7.86 -51.93 -0.41 0.43 16 43 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.15 3.00 6.59 -52.49 -0.35 2.66 16 LS Contribution 365.43 15.07 5.51 5.51 Total: -1.00 -32.48 365.43 -8.72 -41.19 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.50 Total: -0.77 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: -1.95 Total: -14.80 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.36 Total: -38.98 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -0.39 Total: -9.14 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.48 -8.72 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248825555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.060 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds