Wall clock time and date at job start Tue Mar 31 2020 11:03:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42907 * 1
3 3 C 1.35887 * 116.99425 * 2 1
4 4 C 1.39824 * 119.57704 * 0.02562 * 3 2 1
5 5 C 1.36032 * 120.91534 * 179.97438 * 4 3 2
6 6 C 1.40463 * 119.74012 * 0.04562 * 5 4 3
7 7 C 1.40975 * 121.21444 * 180.02562 * 6 5 4
8 8 O 1.35797 * 120.22038 * 359.97438 * 7 6 5
9 9 C 1.42908 * 116.99865 * 180.02562 * 8 7 6
10 10 C 1.36657 * 119.55647 * 179.97438 * 7 6 5
11 11 C 1.39229 * 120.92964 * 359.97438 * 10 7 6
12 12 C 1.36142 * 121.04842 * 0.02562 * 11 10 7
13 13 C 1.50702 * 120.11006 * 180.27205 * 12 11 10
14 14 N 1.46893 * 109.47012 * 105.23253 * 13 12 11
15 15 C 1.46902 * 110.99734 * 288.00358 * 14 13 12
16 16 C 1.46896 * 111.00121 * 164.05479 * 14 13 12
17 17 C 1.50704 * 109.47375 * 189.99850 * 16 14 13
18 18 H 1.07998 * 119.99962 * 359.97438 * 17 16 14
19 19 C 1.37875 * 119.99966 * 179.97438 * 17 16 14
20 20 N 1.31513 * 120.00570 * 0.02562 * 19 17 16
21 21 Si 1.86807 * 119.99826 * 179.97438 * 19 17 16
22 22 H 1.48499 * 109.47059 * 0.02562 * 21 19 17
23 23 H 1.48499 * 109.46771 * 120.00176 * 21 19 17
24 24 H 1.48493 * 109.47218 * 240.00246 * 21 19 17
25 25 C 1.40598 * 119.77670 * 359.97438 * 12 11 10
26 26 C 1.36595 * 119.56950 * 180.02562 * 3 2 1
27 27 H 1.09002 * 109.46752 * 179.97438 * 1 2 3
28 28 H 1.08994 * 109.46792 * 299.99318 * 1 2 3
29 29 H 1.08996 * 109.47312 * 59.99667 * 1 2 3
30 30 H 1.08004 * 119.54681 * 359.97438 * 4 3 2
31 31 H 1.08000 * 120.12686 * 180.02562 * 5 4 3
32 32 H 1.08997 * 109.46971 * 180.02562 * 9 8 7
33 33 H 1.09002 * 109.46512 * 299.99798 * 9 8 7
34 34 H 1.08997 * 109.47156 * 60.00029 * 9 8 7
35 35 H 1.07998 * 119.53038 * 180.02562 * 10 7 6
36 36 H 1.07993 * 119.47314 * 180.02562 * 11 10 7
37 37 H 1.09003 * 109.46592 * 225.23209 * 13 12 11
38 38 H 1.09001 * 109.47309 * 345.22886 * 13 12 11
39 39 H 1.09000 * 109.47018 * 62.34079 * 15 14 13
40 40 H 1.09003 * 109.47270 * 182.33759 * 15 14 13
41 41 H 1.08996 * 109.47717 * 302.33988 * 15 14 13
42 42 H 1.09002 * 109.46946 * 309.99823 * 16 14 13
43 43 H 1.09000 * 109.47289 * 69.99808 * 16 14 13
44 44 H 0.96992 * 120.00588 * 180.02562 * 20 19 17
45 45 H 1.07996 * 120.19462 * 0.04245 * 26 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0459 1.2108 0.0000
4 6 1.2756 2.3778 0.0005
5 6 1.8645 3.6040 0.0011
6 6 3.2656 3.7040 0.0001
7 6 3.9085 4.9586 0.0012
8 8 3.1759 6.1020 0.0026
9 6 3.8980 7.3352 0.0031
10 6 5.2738 5.0165 0.0007
11 6 6.0393 3.8536 -0.0002
12 6 5.4512 2.6257 -0.0013
13 6 6.3003 1.3807 0.0039
14 7 6.2698 0.7728 1.3408
15 6 7.0407 1.5739 2.3010
16 6 6.7567 -0.6125 1.3004
17 6 6.4843 -1.2796 2.6240
18 1 5.9984 -0.7293 3.4162
19 6 6.8553 -2.5924 2.8237
20 7 7.4473 -3.2624 1.8593
21 14 6.5182 -3.4190 4.4647
22 1 5.8475 -2.4565 5.3752
23 1 5.6380 -4.5964 4.2542
24 1 7.8005 -3.8613 5.0688
25 6 4.0490 2.5232 -0.0008
26 6 3.4104 1.2722 -0.0005
27 1 -0.3633 -1.0277 -0.0005
28 1 -0.3633 0.5137 0.8900
29 1 -0.3634 0.5139 -0.8899
30 1 0.1980 2.3046 0.0005
31 1 1.2572 4.4970 0.0019
32 1 3.1948 8.1680 0.0047
33 1 4.5256 7.3883 0.8927
34 1 4.5243 7.3898 -0.8873
35 1 5.7659 5.9779 0.0020
36 1 7.1168 3.9267 -0.0002
37 1 5.9102 0.6719 -0.7266
38 1 7.3271 1.6401 -0.2540
39 1 6.5904 2.5622 2.3938
40 1 7.0362 1.0799 3.2727
41 1 8.0674 1.6741 1.9492
42 1 6.2424 -1.1554 0.5073
43 1 7.8292 -0.6152 1.1062
44 1 7.7080 -4.1861 1.9996
45 1 3.9950 0.3641 -0.0016
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001248825555.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:03:14
Heat of formation + Delta-G solvation = -21.133923 kcal
Electronic energy + Delta-G solvation = -26337.827227 eV
Core-core repulsion = 22707.302550 eV
Total energy + Delta-G solvation = -3630.524677 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-40.82110 -39.35413 -38.11866 -36.47623 -35.00445 -32.67304 -31.85129 -29.95093
-29.51495 -27.81815 -27.01148 -26.79073 -26.08881 -23.63689 -23.06367 -22.44362
-20.91084 -19.83121 -18.46202 -17.50992 -17.29985 -16.37149 -15.98491 -15.86889
-15.55796 -15.43573 -14.88448 -14.49369 -14.32245 -14.00503 -13.73675 -13.56883
-13.33416 -13.06079 -12.89509 -12.76383 -12.22373 -12.05562 -11.92457 -11.88074
-11.50627 -11.32293 -11.23293 -11.01407 -10.87237 -10.74646 -10.58625 -10.52943
-10.38474 -10.27825 -9.77767 -9.17748 -9.05932 -8.38871 -8.15384 -7.27516
-7.09041 -5.97347 -3.97836 0.81169 1.19301 2.28085 3.14976 3.16089
3.34924 3.42218 3.47571 3.47820 4.27404 4.49143 4.76014 4.81812
4.93328 4.97385 4.99116 5.07477 5.18431 5.18780 5.22524 5.29032
5.30830 5.38867 5.49100 5.51632 5.54887 5.73722 5.82195 5.97557
6.13768 6.20982 6.25711 6.32401 6.37859 6.43523 6.52379 6.60345
6.68952 6.82484 6.92805 7.06807 7.34374 7.39588 7.41282 7.61032
7.86552 8.13970 8.26353 8.60694 9.10238 9.66127 11.13576
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.012232 B = 0.004180 C = 0.003360
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2288.450570 B = 6696.481918 C = 8331.568758
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.312 6.312
3 C 0.126 3.874
4 C -0.198 4.198
5 C -0.058 4.058
6 C -0.098 4.098
7 C 0.140 3.860
8 O -0.317 6.317
9 C 0.029 3.971
10 C -0.225 4.225
11 C -0.077 4.077
12 C -0.084 4.084
13 C 0.092 3.908
14 N -0.532 5.532
15 C 0.039 3.961
16 C 0.192 3.808
17 C -0.502 4.502
18 H 0.064 0.936
19 C 0.055 3.945
20 N -0.899 5.899
21 Si 0.896 3.104
22 H -0.272 1.272
23 H -0.284 1.284
24 H -0.286 1.286
25 C 0.035 3.965
26 C -0.127 4.127
27 H 0.097 0.903
28 H 0.053 0.947
29 H 0.051 0.949
30 H 0.126 0.874
31 H 0.130 0.870
32 H 0.097 0.903
33 H 0.055 0.945
34 H 0.055 0.945
35 H 0.123 0.877
36 H 0.120 0.880
37 H 0.078 0.922
38 H 0.033 0.967
39 H 0.045 0.955
40 H 0.074 0.926
41 H 0.009 0.991
42 H 0.030 0.970
43 H -0.009 1.009
44 H 0.260 0.740
45 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.560 17.837 -6.305 21.666
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.225 6.225
3 C 0.081 3.919
4 C -0.217 4.217
5 C -0.076 4.076
6 C -0.099 4.099
7 C 0.095 3.905
8 O -0.230 6.230
9 C -0.066 4.066
10 C -0.244 4.244
11 C -0.096 4.096
12 C -0.085 4.085
13 C -0.036 4.036
14 N -0.256 5.256
15 C -0.110 4.110
16 C 0.067 3.933
17 C -0.541 4.541
18 H 0.082 0.918
19 C -0.146 4.146
20 N -0.539 5.539
21 Si 0.724 3.276
22 H -0.197 1.197
23 H -0.210 1.210
24 H -0.212 1.212
25 C 0.034 3.966
26 C -0.145 4.145
27 H 0.116 0.884
28 H 0.071 0.929
29 H 0.070 0.930
30 H 0.144 0.856
31 H 0.148 0.852
32 H 0.115 0.885
33 H 0.074 0.926
34 H 0.073 0.927
35 H 0.140 0.860
36 H 0.138 0.862
37 H 0.096 0.904
38 H 0.051 0.949
39 H 0.063 0.937
40 H 0.092 0.908
41 H 0.027 0.973
42 H 0.048 0.952
43 H 0.008 0.992
44 H 0.069 0.931
45 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges -11.102 17.465 -6.180 21.598
hybrid contribution 0.749 -0.193 0.663 1.019
sum -10.353 17.272 -5.517 20.879
Atomic orbital electron populations
1.23015 0.79078 1.03754 1.00877 1.86182 1.20788 1.26809 1.88706
1.18721 0.92325 0.83942 0.96876 1.20960 0.99919 0.92388 1.08413
1.20647 0.93179 0.97186 0.96594 1.17352 0.93547 0.90163 1.08813
1.18552 0.90028 0.85254 0.96699 1.85968 1.35667 1.12760 1.88602
1.23028 0.98041 0.84103 1.01475 1.20680 0.92409 0.99405 1.11939
1.20414 0.99491 0.91135 0.98526 1.19671 0.92393 0.95211 1.01203
1.20984 0.95961 0.92969 0.93707 1.62109 1.55187 1.04249 1.04052
1.22213 0.93882 0.96790 0.98102 1.19768 0.93366 0.82019 0.98137
1.21195 1.37810 0.96384 0.98723 0.91814 1.24969 0.95383 0.97329
0.96900 1.69963 1.41407 1.10311 1.32249 0.86475 0.77774 0.79446
0.83942 1.19680 1.21035 1.21210 1.17347 0.92485 0.90890 0.95837
1.20382 0.91413 0.98368 1.04361 0.88418 0.92856 0.93017 0.85614
0.85234 0.88470 0.92609 0.92667 0.85962 0.86183 0.90373 0.94862
0.93665 0.90753 0.97250 0.95162 0.99160 0.93061 0.83218
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.29 9.80 101.05 0.99 1.28 16
2 O -0.31 -4.94 10.47 -19.39 -0.20 -5.14 16
3 C 0.13 2.05 6.63 -39.58 -0.26 1.79 16
4 C -0.20 -2.69 8.94 -39.78 -0.36 -3.05 16
5 C -0.06 -0.80 9.55 -39.54 -0.38 -1.18 16
6 C -0.10 -1.53 5.75 -106.70 -0.61 -2.14 16
7 C 0.14 1.96 6.67 -39.12 -0.26 1.70 16
8 O -0.32 -3.81 9.72 -19.10 -0.19 -4.00 16
9 C 0.03 0.22 9.81 101.05 0.99 1.21 16
10 C -0.23 -2.96 8.99 -39.78 -0.36 -3.32 16
11 C -0.08 -1.12 9.19 -39.97 -0.37 -1.48 16
12 C -0.08 -1.41 4.69 -104.49 -0.49 -1.90 16
13 C 0.09 1.71 4.27 -4.98 -0.02 1.68 16
14 N -0.53 -11.66 4.47 -245.83 -1.10 -12.76 16
15 C 0.04 0.79 9.23 60.07 0.55 1.34 16
16 C 0.19 5.03 4.71 -4.98 -0.02 5.01 16
17 C -0.50 -14.28 8.43 -34.44 -0.29 -14.57 16
18 H 0.06 1.82 7.14 -52.49 -0.37 1.44 16
19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16
20 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16
21 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16
22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16
23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16
24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
25 C 0.03 0.60 5.74 -106.85 -0.61 -0.01 16
26 C -0.13 -2.29 9.16 -39.34 -0.36 -2.65 16
27 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16
28 H 0.05 0.50 7.63 -51.93 -0.40 0.10 16
29 H 0.05 0.45 7.63 -51.93 -0.40 0.05 16
30 H 0.13 1.32 6.22 -52.48 -0.33 1.00 16
31 H 0.13 1.51 7.61 -52.49 -0.40 1.12 16
32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16
33 H 0.06 0.40 7.65 -51.93 -0.40 0.01 16
34 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16
35 H 0.12 1.26 6.21 -52.49 -0.33 0.94 16
36 H 0.12 1.55 7.95 -52.49 -0.42 1.13 16
37 H 0.08 1.46 6.97 -51.93 -0.36 1.10 16
38 H 0.03 0.59 7.77 -51.93 -0.40 0.18 16
39 H 0.04 0.83 7.24 -51.93 -0.38 0.45 16
40 H 0.07 1.62 6.71 -51.93 -0.35 1.27 16
41 H 0.01 0.18 8.07 -51.93 -0.42 -0.24 16
42 H 0.03 0.84 7.86 -51.93 -0.41 0.43 16
43 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16
44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
45 H 0.15 3.00 6.59 -52.49 -0.35 2.66 16
LS Contribution 365.43 15.07 5.51 5.51
Total: -1.00 -32.48 365.43 -8.72 -41.19
By element:
Atomic # 1 Polarization: 5.72 SS G_CDS: -6.50 Total: -0.77 kcal
Atomic # 6 Polarization: -12.84 SS G_CDS: -1.95 Total: -14.80 kcal
Atomic # 7 Polarization: -38.62 SS G_CDS: -0.36 Total: -38.98 kcal
Atomic # 8 Polarization: -8.75 SS G_CDS: -0.39 Total: -9.14 kcal
Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -32.48 -8.72 -41.19 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001248825555.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.060 kcal
(2) G-P(sol) polarization free energy of solvation -32.477 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.417 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.194 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.134 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds