Wall clock time and date at job start Tue Mar 31 2020 11:03:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42907 * 1
3 3 C 1.35887 * 116.99425 * 2 1
4 4 C 1.39824 * 119.57704 * 0.02562 * 3 2 1
5 5 C 1.36032 * 120.91534 * 179.97438 * 4 3 2
6 6 C 1.40463 * 119.74012 * 0.04562 * 5 4 3
7 7 C 1.40975 * 121.21444 * 180.02562 * 6 5 4
8 8 O 1.35797 * 120.22038 * 359.97438 * 7 6 5
9 9 C 1.42908 * 116.99865 * 180.02562 * 8 7 6
10 10 C 1.36657 * 119.55647 * 179.97438 * 7 6 5
11 11 C 1.39229 * 120.92964 * 359.97438 * 10 7 6
12 12 C 1.36142 * 121.04842 * 0.02562 * 11 10 7
13 13 C 1.50702 * 120.11006 * 180.27205 * 12 11 10
14 14 N 1.46893 * 109.47012 * 105.23253 * 13 12 11
15 15 C 1.46902 * 110.99734 * 288.00358 * 14 13 12
16 16 C 1.46896 * 111.00121 * 164.05479 * 14 13 12
17 17 C 1.50704 * 109.47375 * 189.99850 * 16 14 13
18 18 H 1.07998 * 119.99962 * 359.97438 * 17 16 14
19 19 C 1.37875 * 119.99966 * 179.97438 * 17 16 14
20 20 N 1.31513 * 120.00570 * 0.02562 * 19 17 16
21 21 Si 1.86807 * 119.99826 * 179.97438 * 19 17 16
22 22 H 1.48499 * 109.47059 * 0.02562 * 21 19 17
23 23 H 1.48499 * 109.46771 * 120.00176 * 21 19 17
24 24 H 1.48493 * 109.47218 * 240.00246 * 21 19 17
25 25 C 1.40598 * 119.77670 * 359.97438 * 12 11 10
26 26 C 1.36595 * 119.56950 * 180.02562 * 3 2 1
27 27 H 1.09002 * 109.46752 * 179.97438 * 1 2 3
28 28 H 1.08994 * 109.46792 * 299.99318 * 1 2 3
29 29 H 1.08996 * 109.47312 * 59.99667 * 1 2 3
30 30 H 1.08004 * 119.54681 * 359.97438 * 4 3 2
31 31 H 1.08000 * 120.12686 * 180.02562 * 5 4 3
32 32 H 1.08997 * 109.46971 * 180.02562 * 9 8 7
33 33 H 1.09002 * 109.46512 * 299.99798 * 9 8 7
34 34 H 1.08997 * 109.47156 * 60.00029 * 9 8 7
35 35 H 1.07998 * 119.53038 * 180.02562 * 10 7 6
36 36 H 1.07993 * 119.47314 * 180.02562 * 11 10 7
37 37 H 1.09003 * 109.46592 * 225.23209 * 13 12 11
38 38 H 1.09001 * 109.47309 * 345.22886 * 13 12 11
39 39 H 1.09000 * 109.47018 * 62.34079 * 15 14 13
40 40 H 1.09003 * 109.47270 * 182.33759 * 15 14 13
41 41 H 1.08996 * 109.47717 * 302.33988 * 15 14 13
42 42 H 1.09002 * 109.46946 * 309.99823 * 16 14 13
43 43 H 1.09000 * 109.47289 * 69.99808 * 16 14 13
44 44 H 0.96992 * 120.00588 * 180.02562 * 20 19 17
45 45 H 1.07996 * 120.19462 * 0.04245 * 26 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0459 1.2108 0.0000
4 6 1.2756 2.3778 0.0005
5 6 1.8645 3.6040 0.0011
6 6 3.2656 3.7040 0.0001
7 6 3.9085 4.9586 0.0012
8 8 3.1759 6.1020 0.0026
9 6 3.8980 7.3352 0.0031
10 6 5.2738 5.0165 0.0007
11 6 6.0393 3.8536 -0.0002
12 6 5.4512 2.6257 -0.0013
13 6 6.3003 1.3807 0.0039
14 7 6.2698 0.7728 1.3408
15 6 7.0407 1.5739 2.3010
16 6 6.7567 -0.6125 1.3004
17 6 6.4843 -1.2796 2.6240
18 1 5.9984 -0.7293 3.4162
19 6 6.8553 -2.5924 2.8237
20 7 7.4473 -3.2624 1.8593
21 14 6.5182 -3.4190 4.4647
22 1 5.8475 -2.4565 5.3752
23 1 5.6380 -4.5964 4.2542
24 1 7.8005 -3.8613 5.0688
25 6 4.0490 2.5232 -0.0008
26 6 3.4104 1.2722 -0.0005
27 1 -0.3633 -1.0277 -0.0005
28 1 -0.3633 0.5137 0.8900
29 1 -0.3634 0.5139 -0.8899
30 1 0.1980 2.3046 0.0005
31 1 1.2572 4.4970 0.0019
32 1 3.1948 8.1680 0.0047
33 1 4.5256 7.3883 0.8927
34 1 4.5243 7.3898 -0.8873
35 1 5.7659 5.9779 0.0020
36 1 7.1168 3.9267 -0.0002
37 1 5.9102 0.6719 -0.7266
38 1 7.3271 1.6401 -0.2540
39 1 6.5904 2.5622 2.3938
40 1 7.0362 1.0799 3.2727
41 1 8.0674 1.6741 1.9492
42 1 6.2424 -1.1554 0.5073
43 1 7.8292 -0.6152 1.1062
44 1 7.7080 -4.1861 1.9996
45 1 3.9950 0.3641 -0.0016
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001248825555.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:03:13
Heat of formation + Delta-G solvation = -41.547900 kcal
Electronic energy + Delta-G solvation = -26338.712444 eV
Core-core repulsion = 22707.302550 eV
Total energy + Delta-G solvation = -3631.409894 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.92598 -40.39852 -39.28644 -37.98081 -36.26031 -34.67369 -33.18262 -31.04672
-30.77361 -29.17019 -28.51108 -27.71446 -27.51622 -25.37973 -24.27689 -23.53810
-22.57376 -21.23446 -19.50776 -18.61762 -18.48386 -18.29932 -17.19348 -16.85857
-16.69937 -16.52727 -16.44626 -15.96585 -15.81559 -15.67287 -14.87592 -14.64290
-14.56886 -14.44376 -14.15424 -13.92029 -13.81689 -13.38441 -13.20231 -12.95852
-12.80384 -12.77501 -12.70391 -12.62566 -12.42989 -12.24692 -12.03532 -11.91419
-11.74076 -11.58710 -11.45836 -11.22570 -10.61642 -10.22841 -9.27260 -8.98291
-8.35180 -8.18293 -6.28954 -0.33124 0.05911 1.10961 1.39342 1.40597
1.54202 2.03082 2.29032 2.40866 2.45249 3.06942 3.12989 3.52510
3.69902 3.81052 3.93914 3.97867 4.17716 4.25566 4.33474 4.38755
4.43150 4.45496 4.46990 4.49044 4.53976 4.59017 4.72684 4.73786
4.78282 4.81957 4.90679 5.02200 5.07476 5.13364 5.19923 5.24809
5.29673 5.36749 5.45390 5.53796 5.65609 5.80780 5.88561 6.07000
6.36457 6.44978 6.51263 6.64790 6.87075 7.40305 8.91860
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.012232 B = 0.004180 C = 0.003360
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2288.450570 B = 6696.481918 C = 8331.568758
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.017 3.983
2 O -0.344 6.344
3 C 0.127 3.873
4 C -0.198 4.198
5 C -0.048 4.048
6 C -0.120 4.120
7 C 0.150 3.850
8 O -0.323 6.323
9 C 0.017 3.983
10 C -0.228 4.228
11 C -0.062 4.062
12 C -0.117 4.117
13 C 0.100 3.900
14 N -0.539 5.539
15 C 0.046 3.954
16 C 0.210 3.790
17 C -0.519 4.519
18 H 0.059 0.941
19 C 0.002 3.998
20 N -0.934 5.934
21 Si 0.967 3.033
22 H -0.266 1.266
23 H -0.278 1.278
24 H -0.276 1.276
25 C 0.025 3.975
26 C -0.168 4.168
27 H 0.112 0.888
28 H 0.067 0.933
29 H 0.073 0.927
30 H 0.161 0.839
31 H 0.158 0.842
32 H 0.123 0.877
33 H 0.064 0.936
34 H 0.067 0.933
35 H 0.157 0.843
36 H 0.137 0.863
37 H 0.060 0.940
38 H 0.041 0.959
39 H 0.068 0.932
40 H 0.054 0.946
41 H 0.016 0.984
42 H 0.000 1.000
43 H -0.035 1.035
44 H 0.264 0.736
45 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.141 20.886 -5.514 24.780
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 O -0.258 6.258
3 C 0.081 3.919
4 C -0.216 4.216
5 C -0.066 4.066
6 C -0.121 4.121
7 C 0.104 3.896
8 O -0.236 6.236
9 C -0.077 4.077
10 C -0.247 4.247
11 C -0.081 4.081
12 C -0.118 4.118
13 C -0.027 4.027
14 N -0.263 5.263
15 C -0.102 4.102
16 C 0.084 3.916
17 C -0.557 4.557
18 H 0.077 0.923
19 C -0.195 4.195
20 N -0.575 5.575
21 Si 0.792 3.208
22 H -0.190 1.190
23 H -0.204 1.204
24 H -0.201 1.201
25 C 0.024 3.976
26 C -0.187 4.187
27 H 0.130 0.870
28 H 0.086 0.914
29 H 0.091 0.909
30 H 0.178 0.822
31 H 0.175 0.825
32 H 0.141 0.859
33 H 0.083 0.917
34 H 0.085 0.915
35 H 0.174 0.826
36 H 0.155 0.845
37 H 0.078 0.922
38 H 0.060 0.940
39 H 0.087 0.913
40 H 0.073 0.927
41 H 0.035 0.965
42 H 0.018 0.982
43 H -0.018 1.018
44 H 0.073 0.927
45 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges -12.694 20.545 -5.395 24.746
hybrid contribution 1.155 -1.002 0.341 1.567
sum -11.539 19.543 -5.054 23.252
Atomic orbital electron populations
1.23372 0.76331 1.05439 1.02573 1.86143 1.23813 1.27269 1.88570
1.18906 0.92002 0.85111 0.95832 1.21217 1.01391 0.91156 1.07838
1.21001 0.92710 0.98186 0.94667 1.17579 0.94476 0.90362 1.09643
1.18599 0.90405 0.85567 0.95035 1.85966 1.36376 1.13266 1.87980
1.23403 0.99117 0.82742 1.02452 1.20961 0.92200 1.00173 1.11325
1.20652 1.00563 0.90647 0.96216 1.19467 0.92248 0.94952 1.05086
1.20873 0.96807 0.93672 0.91384 1.62001 1.55194 1.02654 1.06459
1.22148 0.94322 0.97184 0.96582 1.19377 0.91227 0.84600 0.96422
1.21457 1.37924 0.97035 0.99316 0.92260 1.25882 0.94915 0.97923
1.00823 1.70087 1.42190 1.10788 1.34433 0.85363 0.77996 0.78262
0.79178 1.18973 1.20414 1.20109 1.17424 0.92861 0.91194 0.96088
1.20208 0.92467 0.97696 1.08344 0.86963 0.91432 0.90864 0.82157
0.82473 0.85879 0.91746 0.91464 0.82594 0.84473 0.92200 0.94039
0.91321 0.92666 0.96528 0.98154 1.01771 0.92705 0.87070
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.33 9.80 113.37 1.11 1.44 16
2 O -0.34 -11.25 10.47 -92.28 -0.97 -12.22 16
3 C 0.13 4.23 6.63 22.27 0.15 4.38 16
4 C -0.20 -5.06 8.94 22.14 0.20 -4.87 16
5 C -0.05 -1.22 9.55 22.30 0.21 -1.00 16
6 C -0.12 -3.60 5.75 -21.21 -0.12 -3.72 16
7 C 0.15 3.81 6.67 22.57 0.15 3.96 16
8 O -0.32 -6.56 9.72 -91.27 -0.89 -7.44 16
9 C 0.02 0.19 9.81 113.37 1.11 1.30 16
10 C -0.23 -5.31 8.99 22.14 0.20 -5.11 16
11 C -0.06 -1.71 9.19 22.02 0.20 -1.51 16
12 C -0.12 -4.02 4.69 -19.78 -0.09 -4.11 16
13 C 0.10 3.97 4.27 85.56 0.36 4.33 16
14 N -0.54 -25.04 4.47 -931.65 -4.17 -29.20 16
15 C 0.05 1.90 9.23 127.69 1.18 3.08 16
16 C 0.21 11.78 4.71 85.56 0.40 12.18 16
17 C -0.52 -30.80 8.43 25.60 0.22 -30.59 16
18 H 0.06 3.50 7.14 -2.91 -0.02 3.48 16
19 C 0.00 0.14 5.46 84.65 0.46 0.60 16
20 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16
21 Si 0.97 45.98 29.54 68.60 2.03 48.01 16
22 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16
23 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16
24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16
25 C 0.02 0.88 5.74 -21.31 -0.12 0.76 16
26 C -0.17 -6.54 9.16 22.43 0.21 -6.33 16
27 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16
28 H 0.07 1.13 7.63 -2.39 -0.02 1.12 16
29 H 0.07 1.12 7.63 -2.39 -0.02 1.10 16
30 H 0.16 2.86 6.22 -2.91 -0.02 2.85 16
31 H 0.16 3.07 7.61 -2.91 -0.02 3.05 16
32 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16
33 H 0.06 0.65 7.65 -2.39 -0.02 0.63 16
34 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16
35 H 0.16 2.52 6.21 -2.91 -0.02 2.50 16
36 H 0.14 3.23 7.95 -2.91 -0.02 3.21 16
37 H 0.06 2.52 6.97 -2.39 -0.02 2.50 16
38 H 0.04 1.53 7.77 -2.39 -0.02 1.51 16
39 H 0.07 2.49 7.24 -2.39 -0.02 2.47 16
40 H 0.05 2.46 6.71 -2.39 -0.02 2.45 16
41 H 0.02 0.64 8.07 -2.39 -0.02 0.62 16
42 H 0.00 0.02 7.86 -2.39 -0.02 0.00 16
43 H -0.04 -2.12 8.12 -2.39 -0.02 -2.14 16
44 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16
45 H 0.11 5.06 6.59 -2.91 -0.02 5.04 16
Total: -1.00 -74.30 365.43 3.11 -71.19
By element:
Atomic # 1 Polarization: 11.52 SS G_CDS: 0.99 Total: 12.51 kcal
Atomic # 6 Polarization: -31.02 SS G_CDS: 5.83 Total: -25.20 kcal
Atomic # 7 Polarization: -82.97 SS G_CDS: -3.88 Total: -86.85 kcal
Atomic # 8 Polarization: -17.81 SS G_CDS: -1.85 Total: -19.66 kcal
Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal
Total: -74.30 3.11 -71.19 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001248825555.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.646 kcal
(2) G-P(sol) polarization free energy of solvation -74.302 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.657 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.194 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.548 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds