Wall clock time and date at job start Tue Mar 31 2020 11:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35887 * 116.99425 * 2 1 4 4 C 1.39824 * 119.57704 * 0.02562 * 3 2 1 5 5 C 1.36032 * 120.91534 * 179.97438 * 4 3 2 6 6 C 1.40463 * 119.74012 * 0.04562 * 5 4 3 7 7 C 1.40975 * 121.21444 * 180.02562 * 6 5 4 8 8 O 1.35797 * 120.22038 * 359.97438 * 7 6 5 9 9 C 1.42908 * 116.99865 * 180.02562 * 8 7 6 10 10 C 1.36657 * 119.55647 * 179.97438 * 7 6 5 11 11 C 1.39229 * 120.92964 * 359.97438 * 10 7 6 12 12 C 1.36142 * 121.04842 * 0.02562 * 11 10 7 13 13 C 1.50702 * 120.11006 * 180.27205 * 12 11 10 14 14 N 1.46893 * 109.47012 * 105.23253 * 13 12 11 15 15 C 1.46902 * 110.99734 * 288.00358 * 14 13 12 16 16 C 1.46896 * 111.00121 * 164.05479 * 14 13 12 17 17 C 1.50704 * 109.47375 * 189.99850 * 16 14 13 18 18 H 1.07998 * 119.99962 * 359.97438 * 17 16 14 19 19 C 1.37875 * 119.99966 * 179.97438 * 17 16 14 20 20 N 1.31513 * 120.00570 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99826 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47059 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46771 * 120.00176 * 21 19 17 24 24 H 1.48493 * 109.47218 * 240.00246 * 21 19 17 25 25 C 1.40598 * 119.77670 * 359.97438 * 12 11 10 26 26 C 1.36595 * 119.56950 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46752 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46792 * 299.99318 * 1 2 3 29 29 H 1.08996 * 109.47312 * 59.99667 * 1 2 3 30 30 H 1.08004 * 119.54681 * 359.97438 * 4 3 2 31 31 H 1.08000 * 120.12686 * 180.02562 * 5 4 3 32 32 H 1.08997 * 109.46971 * 180.02562 * 9 8 7 33 33 H 1.09002 * 109.46512 * 299.99798 * 9 8 7 34 34 H 1.08997 * 109.47156 * 60.00029 * 9 8 7 35 35 H 1.07998 * 119.53038 * 180.02562 * 10 7 6 36 36 H 1.07993 * 119.47314 * 180.02562 * 11 10 7 37 37 H 1.09003 * 109.46592 * 225.23209 * 13 12 11 38 38 H 1.09001 * 109.47309 * 345.22886 * 13 12 11 39 39 H 1.09000 * 109.47018 * 62.34079 * 15 14 13 40 40 H 1.09003 * 109.47270 * 182.33759 * 15 14 13 41 41 H 1.08996 * 109.47717 * 302.33988 * 15 14 13 42 42 H 1.09002 * 109.46946 * 309.99823 * 16 14 13 43 43 H 1.09000 * 109.47289 * 69.99808 * 16 14 13 44 44 H 0.96992 * 120.00588 * 180.02562 * 20 19 17 45 45 H 1.07996 * 120.19462 * 0.04245 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2756 2.3778 0.0005 5 6 1.8645 3.6040 0.0011 6 6 3.2656 3.7040 0.0001 7 6 3.9085 4.9586 0.0012 8 8 3.1759 6.1020 0.0026 9 6 3.8980 7.3352 0.0031 10 6 5.2738 5.0165 0.0007 11 6 6.0393 3.8536 -0.0002 12 6 5.4512 2.6257 -0.0013 13 6 6.3003 1.3807 0.0039 14 7 6.2698 0.7728 1.3408 15 6 7.0407 1.5739 2.3010 16 6 6.7567 -0.6125 1.3004 17 6 6.4843 -1.2796 2.6240 18 1 5.9984 -0.7293 3.4162 19 6 6.8553 -2.5924 2.8237 20 7 7.4473 -3.2624 1.8593 21 14 6.5182 -3.4190 4.4647 22 1 5.8475 -2.4565 5.3752 23 1 5.6380 -4.5964 4.2542 24 1 7.8005 -3.8613 5.0688 25 6 4.0490 2.5232 -0.0008 26 6 3.4104 1.2722 -0.0005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.1980 2.3046 0.0005 31 1 1.2572 4.4970 0.0019 32 1 3.1948 8.1680 0.0047 33 1 4.5256 7.3883 0.8927 34 1 4.5243 7.3898 -0.8873 35 1 5.7659 5.9779 0.0020 36 1 7.1168 3.9267 -0.0002 37 1 5.9102 0.6719 -0.7266 38 1 7.3271 1.6401 -0.2540 39 1 6.5904 2.5622 2.3938 40 1 7.0362 1.0799 3.2727 41 1 8.0674 1.6741 1.9492 42 1 6.2424 -1.1554 0.5073 43 1 7.8292 -0.6152 1.1062 44 1 7.7080 -4.1861 1.9996 45 1 3.9950 0.3641 -0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248825555.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:13 Heat of formation + Delta-G solvation = -41.547900 kcal Electronic energy + Delta-G solvation = -26338.712444 eV Core-core repulsion = 22707.302550 eV Total energy + Delta-G solvation = -3631.409894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.92598 -40.39852 -39.28644 -37.98081 -36.26031 -34.67369 -33.18262 -31.04672 -30.77361 -29.17019 -28.51108 -27.71446 -27.51622 -25.37973 -24.27689 -23.53810 -22.57376 -21.23446 -19.50776 -18.61762 -18.48386 -18.29932 -17.19348 -16.85857 -16.69937 -16.52727 -16.44626 -15.96585 -15.81559 -15.67287 -14.87592 -14.64290 -14.56886 -14.44376 -14.15424 -13.92029 -13.81689 -13.38441 -13.20231 -12.95852 -12.80384 -12.77501 -12.70391 -12.62566 -12.42989 -12.24692 -12.03532 -11.91419 -11.74076 -11.58710 -11.45836 -11.22570 -10.61642 -10.22841 -9.27260 -8.98291 -8.35180 -8.18293 -6.28954 -0.33124 0.05911 1.10961 1.39342 1.40597 1.54202 2.03082 2.29032 2.40866 2.45249 3.06942 3.12989 3.52510 3.69902 3.81052 3.93914 3.97867 4.17716 4.25566 4.33474 4.38755 4.43150 4.45496 4.46990 4.49044 4.53976 4.59017 4.72684 4.73786 4.78282 4.81957 4.90679 5.02200 5.07476 5.13364 5.19923 5.24809 5.29673 5.36749 5.45390 5.53796 5.65609 5.80780 5.88561 6.07000 6.36457 6.44978 6.51263 6.64790 6.87075 7.40305 8.91860 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.012232 B = 0.004180 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2288.450570 B = 6696.481918 C = 8331.568758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.344 6.344 3 C 0.127 3.873 4 C -0.198 4.198 5 C -0.048 4.048 6 C -0.120 4.120 7 C 0.150 3.850 8 O -0.323 6.323 9 C 0.017 3.983 10 C -0.228 4.228 11 C -0.062 4.062 12 C -0.117 4.117 13 C 0.100 3.900 14 N -0.539 5.539 15 C 0.046 3.954 16 C 0.210 3.790 17 C -0.519 4.519 18 H 0.059 0.941 19 C 0.002 3.998 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.276 1.276 25 C 0.025 3.975 26 C -0.168 4.168 27 H 0.112 0.888 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.161 0.839 31 H 0.158 0.842 32 H 0.123 0.877 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.157 0.843 36 H 0.137 0.863 37 H 0.060 0.940 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.016 0.984 42 H 0.000 1.000 43 H -0.035 1.035 44 H 0.264 0.736 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.141 20.886 -5.514 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.258 6.258 3 C 0.081 3.919 4 C -0.216 4.216 5 C -0.066 4.066 6 C -0.121 4.121 7 C 0.104 3.896 8 O -0.236 6.236 9 C -0.077 4.077 10 C -0.247 4.247 11 C -0.081 4.081 12 C -0.118 4.118 13 C -0.027 4.027 14 N -0.263 5.263 15 C -0.102 4.102 16 C 0.084 3.916 17 C -0.557 4.557 18 H 0.077 0.923 19 C -0.195 4.195 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.190 1.190 23 H -0.204 1.204 24 H -0.201 1.201 25 C 0.024 3.976 26 C -0.187 4.187 27 H 0.130 0.870 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.178 0.822 31 H 0.175 0.825 32 H 0.141 0.859 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.174 0.826 36 H 0.155 0.845 37 H 0.078 0.922 38 H 0.060 0.940 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.035 0.965 42 H 0.018 0.982 43 H -0.018 1.018 44 H 0.073 0.927 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.694 20.545 -5.395 24.746 hybrid contribution 1.155 -1.002 0.341 1.567 sum -11.539 19.543 -5.054 23.252 Atomic orbital electron populations 1.23372 0.76331 1.05439 1.02573 1.86143 1.23813 1.27269 1.88570 1.18906 0.92002 0.85111 0.95832 1.21217 1.01391 0.91156 1.07838 1.21001 0.92710 0.98186 0.94667 1.17579 0.94476 0.90362 1.09643 1.18599 0.90405 0.85567 0.95035 1.85966 1.36376 1.13266 1.87980 1.23403 0.99117 0.82742 1.02452 1.20961 0.92200 1.00173 1.11325 1.20652 1.00563 0.90647 0.96216 1.19467 0.92248 0.94952 1.05086 1.20873 0.96807 0.93672 0.91384 1.62001 1.55194 1.02654 1.06459 1.22148 0.94322 0.97184 0.96582 1.19377 0.91227 0.84600 0.96422 1.21457 1.37924 0.97035 0.99316 0.92260 1.25882 0.94915 0.97923 1.00823 1.70087 1.42190 1.10788 1.34433 0.85363 0.77996 0.78262 0.79178 1.18973 1.20414 1.20109 1.17424 0.92861 0.91194 0.96088 1.20208 0.92467 0.97696 1.08344 0.86963 0.91432 0.90864 0.82157 0.82473 0.85879 0.91746 0.91464 0.82594 0.84473 0.92200 0.94039 0.91321 0.92666 0.96528 0.98154 1.01771 0.92705 0.87070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.80 113.37 1.11 1.44 16 2 O -0.34 -11.25 10.47 -92.28 -0.97 -12.22 16 3 C 0.13 4.23 6.63 22.27 0.15 4.38 16 4 C -0.20 -5.06 8.94 22.14 0.20 -4.87 16 5 C -0.05 -1.22 9.55 22.30 0.21 -1.00 16 6 C -0.12 -3.60 5.75 -21.21 -0.12 -3.72 16 7 C 0.15 3.81 6.67 22.57 0.15 3.96 16 8 O -0.32 -6.56 9.72 -91.27 -0.89 -7.44 16 9 C 0.02 0.19 9.81 113.37 1.11 1.30 16 10 C -0.23 -5.31 8.99 22.14 0.20 -5.11 16 11 C -0.06 -1.71 9.19 22.02 0.20 -1.51 16 12 C -0.12 -4.02 4.69 -19.78 -0.09 -4.11 16 13 C 0.10 3.97 4.27 85.56 0.36 4.33 16 14 N -0.54 -25.04 4.47 -931.65 -4.17 -29.20 16 15 C 0.05 1.90 9.23 127.69 1.18 3.08 16 16 C 0.21 11.78 4.71 85.56 0.40 12.18 16 17 C -0.52 -30.80 8.43 25.60 0.22 -30.59 16 18 H 0.06 3.50 7.14 -2.91 -0.02 3.48 16 19 C 0.00 0.14 5.46 84.65 0.46 0.60 16 20 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 21 Si 0.97 45.98 29.54 68.60 2.03 48.01 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 C 0.02 0.88 5.74 -21.31 -0.12 0.76 16 26 C -0.17 -6.54 9.16 22.43 0.21 -6.33 16 27 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.07 1.13 7.63 -2.39 -0.02 1.12 16 29 H 0.07 1.12 7.63 -2.39 -0.02 1.10 16 30 H 0.16 2.86 6.22 -2.91 -0.02 2.85 16 31 H 0.16 3.07 7.61 -2.91 -0.02 3.05 16 32 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.65 7.65 -2.39 -0.02 0.63 16 34 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 35 H 0.16 2.52 6.21 -2.91 -0.02 2.50 16 36 H 0.14 3.23 7.95 -2.91 -0.02 3.21 16 37 H 0.06 2.52 6.97 -2.39 -0.02 2.50 16 38 H 0.04 1.53 7.77 -2.39 -0.02 1.51 16 39 H 0.07 2.49 7.24 -2.39 -0.02 2.47 16 40 H 0.05 2.46 6.71 -2.39 -0.02 2.45 16 41 H 0.02 0.64 8.07 -2.39 -0.02 0.62 16 42 H 0.00 0.02 7.86 -2.39 -0.02 0.00 16 43 H -0.04 -2.12 8.12 -2.39 -0.02 -2.14 16 44 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 45 H 0.11 5.06 6.59 -2.91 -0.02 5.04 16 Total: -1.00 -74.30 365.43 3.11 -71.19 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.99 Total: 12.51 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: 5.83 Total: -25.20 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -3.88 Total: -86.85 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -1.85 Total: -19.66 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -74.30 3.11 -71.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248825555.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.646 kcal (2) G-P(sol) polarization free energy of solvation -74.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds