Wall clock time and date at job start Tue Mar 31 2020 11:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35801 * 116.99679 * 2 1 4 4 C 1.36522 * 120.11641 * 0.02562 * 3 2 1 5 5 C 1.39673 * 120.87320 * 180.02562 * 4 3 2 6 6 O 1.35873 * 119.60781 * 179.97438 * 5 4 3 7 7 C 1.42902 * 116.99803 * 359.97438 * 6 5 4 8 8 C 1.37666 * 120.78793 * 359.95555 * 5 4 3 9 9 C 1.50703 * 120.18708 * 180.02562 * 8 5 4 10 10 N 1.46899 * 109.47041 * 89.99733 * 9 8 5 11 11 C 1.46898 * 111.00084 * 66.04986 * 10 9 8 12 12 C 1.46897 * 111.00024 * 190.00074 * 10 9 8 13 13 C 1.50696 * 109.47266 * 170.00298 * 12 10 9 14 14 H 1.08003 * 120.00137 * 359.97438 * 13 12 10 15 15 C 1.37879 * 119.99903 * 180.02562 * 13 12 10 16 16 N 1.31520 * 120.00048 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00308 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47344 * 89.99851 * 17 15 13 19 19 H 1.48495 * 109.47400 * 210.00181 * 17 15 13 20 20 H 1.48502 * 109.46794 * 329.99829 * 17 15 13 21 21 C 1.40452 * 119.62836 * 0.02562 * 8 5 4 22 22 C 1.40590 * 121.19265 * 180.02562 * 21 8 5 23 23 C 1.36099 * 119.65343 * 179.97438 * 22 21 8 24 24 C 1.39351 * 120.96108 * 0.03017 * 23 22 21 25 25 C 1.36148 * 120.98635 * 359.97438 * 24 23 22 26 26 C 1.40410 * 119.69291 * 359.70050 * 25 24 23 27 27 H 1.09002 * 109.47382 * 59.99890 * 1 2 3 28 28 H 1.09001 * 109.46938 * 299.99876 * 1 2 3 29 29 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.07994 * 119.56185 * 0.02562 * 4 3 2 31 31 H 1.08995 * 109.47131 * 300.00379 * 7 6 5 32 32 H 1.08999 * 109.46993 * 60.00500 * 7 6 5 33 33 H 1.09004 * 109.47147 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47005 * 210.00042 * 9 8 5 35 35 H 1.09006 * 109.46684 * 330.00262 * 9 8 5 36 36 H 1.09004 * 109.47259 * 59.99164 * 11 10 9 37 37 H 1.08996 * 109.47418 * 179.97438 * 11 10 9 38 38 H 1.09009 * 109.46929 * 299.99849 * 11 10 9 39 39 H 1.09004 * 109.47392 * 290.00193 * 12 10 9 40 40 H 1.09004 * 109.47236 * 50.00295 * 12 10 9 41 41 H 0.96997 * 120.00466 * 180.02562 * 16 15 13 42 42 H 1.07996 * 120.16784 * 0.02562 * 22 21 8 43 43 H 1.08005 * 119.51575 * 179.97438 * 23 22 21 44 44 H 1.08005 * 119.50854 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.14747 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.3042 2.3565 0.0005 5 6 1.9217 3.6093 0.0000 6 8 1.1590 4.7337 0.0000 7 6 -0.2589 4.5557 0.0000 8 6 3.2941 3.7184 -0.0001 9 6 3.9462 5.0771 -0.0001 10 7 4.1581 5.5184 1.3848 11 6 5.1369 4.6611 2.0667 12 6 4.5703 6.9276 1.4310 13 6 4.5404 7.4133 2.8573 14 1 4.2443 6.7424 3.6501 15 6 4.8899 8.7145 3.1499 16 7 4.8643 9.1383 4.3947 17 14 5.4013 9.8753 1.7786 18 1 4.2036 10.5777 1.2522 19 1 6.3668 10.8717 2.3078 20 1 6.0403 9.0990 0.6856 21 6 4.0830 2.5564 -0.0003 22 6 5.4870 2.6296 0.0001 23 6 6.2210 1.4835 0.0004 24 6 5.6014 0.2354 -0.0002 25 6 4.2443 0.1265 -0.0007 26 6 3.4535 1.2868 0.0058 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2261 2.2938 0.0014 31 1 -0.5554 4.0006 -0.8899 32 1 -0.5554 4.0007 0.8900 33 1 -0.7474 5.5302 0.0005 34 1 4.9056 5.0195 -0.5141 35 1 3.3008 5.7897 -0.5139 36 1 6.0885 4.7035 1.5367 37 1 5.2753 5.0103 3.0899 38 1 4.7734 3.6335 2.0791 39 1 5.5816 7.0236 1.0357 40 1 3.8866 7.5262 0.8290 41 1 5.1099 10.0538 4.6006 42 1 5.9804 3.5903 0.0009 43 1 7.2995 1.5423 0.0003 44 1 6.2068 -0.6591 -0.0003 45 1 3.7783 -0.8477 -0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249442844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:08 Heat of formation + Delta-G solvation = -11.927827 kcal Electronic energy + Delta-G solvation = -26783.433402 eV Core-core repulsion = 23153.307931 eV Total energy + Delta-G solvation = -3630.125471 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.07312 -38.96530 -38.69604 -36.66304 -34.86501 -32.76928 -31.84952 -30.03301 -29.67579 -27.95982 -27.82415 -27.01756 -25.75289 -23.56693 -23.12957 -22.55148 -20.83419 -19.69829 -18.69887 -17.71078 -17.27556 -16.73032 -16.24596 -16.11391 -15.50480 -15.10771 -14.83779 -14.58871 -14.42660 -14.24899 -14.14307 -14.02891 -13.33560 -13.15495 -13.02822 -12.80369 -12.34303 -11.97822 -11.91531 -11.86809 -11.65132 -11.59747 -11.28594 -11.18855 -10.99157 -10.86917 -10.66478 -10.45745 -10.20762 -10.01538 -9.79006 -9.33198 -9.20437 -8.49809 -8.40261 -7.31031 -7.10571 -5.98192 -3.94450 0.65201 1.10054 2.13378 2.97837 3.03961 3.33494 3.40375 3.42875 3.43119 4.14131 4.48319 4.59843 4.74779 4.86846 4.87897 4.91348 4.94581 5.09471 5.16025 5.16208 5.19220 5.20704 5.27918 5.35625 5.40995 5.50004 5.54855 5.68424 5.81911 6.00223 6.09654 6.13616 6.19907 6.29254 6.35785 6.45777 6.55127 6.63848 6.78538 6.84412 6.96653 7.01625 7.09825 7.10603 7.55524 7.69025 8.02973 8.18169 8.75558 9.11464 9.64069 11.15129 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015192 B = 0.004120 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.576997 B = 6794.372293 C = 8025.488320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.172 3.828 4 C -0.291 4.291 5 C 0.182 3.818 6 O -0.294 6.294 7 C 0.028 3.972 8 C -0.134 4.134 9 C 0.104 3.896 10 N -0.520 5.520 11 C 0.034 3.966 12 C 0.162 3.838 13 C -0.504 4.504 14 H 0.080 0.920 15 C 0.067 3.933 16 N -0.903 5.903 17 Si 0.874 3.126 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.268 1.268 21 C 0.025 3.975 22 C -0.118 4.118 23 C -0.100 4.100 24 C -0.143 4.143 25 C -0.077 4.077 26 C -0.100 4.100 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.134 0.866 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.031 0.969 35 H 0.079 0.921 36 H 0.010 0.990 37 H 0.076 0.924 38 H 0.052 0.948 39 H -0.013 1.013 40 H 0.024 0.976 41 H 0.262 0.738 42 H 0.134 0.866 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 -19.205 -12.476 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.126 3.874 4 C -0.310 4.310 5 C 0.135 3.865 6 O -0.206 6.206 7 C -0.068 4.068 8 C -0.136 4.136 9 C -0.023 4.023 10 N -0.244 5.244 11 C -0.114 4.114 12 C 0.036 3.964 13 C -0.542 4.542 14 H 0.098 0.902 15 C -0.134 4.134 16 N -0.542 5.542 17 Si 0.701 3.299 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.193 1.193 21 C 0.025 3.975 22 C -0.136 4.136 23 C -0.118 4.118 24 C -0.161 4.161 25 C -0.095 4.095 26 C -0.101 4.101 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.119 0.881 30 H 0.151 0.849 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.119 0.881 34 H 0.049 0.951 35 H 0.098 0.902 36 H 0.029 0.971 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.005 0.995 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.152 0.848 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.477 -19.054 -12.110 23.783 hybrid contribution 0.405 0.781 -0.949 1.294 sum -7.072 -18.273 -13.059 23.547 Atomic orbital electron populations 1.23087 0.78296 1.03975 1.01538 1.86006 1.21405 1.26829 1.88117 1.18351 0.91092 0.83792 0.94140 1.20911 1.00447 0.91989 1.17695 1.18306 0.90290 0.84366 0.93500 1.86245 1.17894 1.28750 1.87743 1.23038 0.79428 1.03763 1.00558 1.19049 0.89946 0.95256 1.09323 1.20755 0.97802 0.91898 0.91886 1.61948 1.46427 1.04179 1.11870 1.22429 0.92052 0.96423 1.00480 1.20190 0.93237 0.84435 0.98560 1.21049 1.44400 0.97037 0.91706 0.90185 1.24891 0.95363 0.97883 0.95244 1.69899 1.49440 1.17122 1.17784 0.86876 0.78868 0.81166 0.82941 1.20189 1.21315 1.19255 1.17448 0.93324 0.90495 0.96251 1.21179 0.92232 0.99389 1.00779 1.20863 0.99985 0.92343 0.98641 1.20731 0.94608 0.97532 1.03232 1.20832 0.93678 0.97245 0.97764 1.17308 0.89647 0.93939 1.09156 0.92616 0.92441 0.88076 0.84852 0.93309 0.92876 0.88131 0.95146 0.90219 0.97118 0.90518 0.92978 0.99539 0.95787 0.92783 0.84830 0.86048 0.86252 0.85575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.56 9.70 -19.12 -0.19 -3.75 16 3 C 0.17 2.35 6.66 -39.15 -0.26 2.09 16 4 C -0.29 -3.91 7.97 -39.67 -0.32 -4.23 16 5 C 0.18 2.94 6.65 -39.25 -0.26 2.68 16 6 O -0.29 -4.74 9.48 -19.34 -0.18 -4.92 16 7 C 0.03 0.30 9.80 101.05 0.99 1.29 16 8 C -0.13 -2.31 4.92 -104.00 -0.51 -2.82 16 9 C 0.10 1.97 4.66 -4.97 -0.02 1.95 16 10 N -0.52 -11.61 4.74 -245.82 -1.17 -12.78 16 11 C 0.03 0.71 7.88 60.06 0.47 1.18 16 12 C 0.16 4.08 3.79 -4.98 -0.02 4.07 16 13 C -0.50 -14.71 9.01 -34.44 -0.31 -15.03 16 14 H 0.08 2.55 7.37 -52.48 -0.39 2.17 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 17 Si 0.87 21.94 27.47 -169.99 -4.67 17.27 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.27 -6.49 6.54 56.52 0.37 -6.12 16 21 C 0.03 0.40 4.82 -106.85 -0.52 -0.11 16 22 C -0.12 -1.72 7.41 -39.46 -0.29 -2.01 16 23 C -0.10 -1.23 9.95 -39.94 -0.40 -1.63 16 24 C -0.14 -1.65 9.95 -39.92 -0.40 -2.05 16 25 C -0.08 -0.97 9.55 -39.52 -0.38 -1.35 16 26 C -0.10 -1.46 5.75 -106.70 -0.61 -2.08 16 27 H 0.06 0.35 7.65 -51.93 -0.40 -0.04 16 28 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.13 1.40 4.35 -52.49 -0.23 1.17 16 31 H 0.05 0.42 7.64 -51.93 -0.40 0.03 16 32 H 0.05 0.53 7.63 -51.93 -0.40 0.13 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.03 0.54 6.40 -51.93 -0.33 0.21 16 35 H 0.08 1.53 7.29 -51.93 -0.38 1.15 16 36 H 0.01 0.20 6.81 -51.93 -0.35 -0.15 16 37 H 0.08 1.75 6.76 -51.93 -0.35 1.40 16 38 H 0.05 1.00 5.63 -51.92 -0.29 0.71 16 39 H -0.01 -0.33 7.18 -51.93 -0.37 -0.70 16 40 H 0.02 0.61 7.36 -51.93 -0.38 0.23 16 41 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 42 H 0.13 1.99 4.63 -52.49 -0.24 1.75 16 43 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 44 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 45 H 0.13 1.38 7.60 -52.49 -0.40 0.98 16 LS Contribution 352.81 15.07 5.32 5.32 Total: -1.00 -33.91 352.81 -8.22 -42.12 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -6.17 Total: -0.89 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -1.94 Total: -14.99 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: -0.39 Total: -40.16 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.37 Total: -8.67 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.91 -8.22 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249442844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.196 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds