Wall clock time and date at job start Tue Mar 31 2020 11:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35801 * 116.99679 * 2 1 4 4 C 1.36522 * 120.11641 * 0.02562 * 3 2 1 5 5 C 1.39673 * 120.87320 * 180.02562 * 4 3 2 6 6 O 1.35873 * 119.60781 * 179.97438 * 5 4 3 7 7 C 1.42902 * 116.99803 * 359.97438 * 6 5 4 8 8 C 1.37666 * 120.78793 * 359.95555 * 5 4 3 9 9 C 1.50703 * 120.18708 * 180.02562 * 8 5 4 10 10 N 1.46899 * 109.47041 * 89.99733 * 9 8 5 11 11 C 1.46898 * 111.00084 * 66.04986 * 10 9 8 12 12 C 1.46897 * 111.00024 * 190.00074 * 10 9 8 13 13 C 1.50696 * 109.47266 * 170.00298 * 12 10 9 14 14 H 1.08003 * 120.00137 * 359.97438 * 13 12 10 15 15 C 1.37879 * 119.99903 * 180.02562 * 13 12 10 16 16 N 1.31520 * 120.00048 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00308 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47344 * 89.99851 * 17 15 13 19 19 H 1.48495 * 109.47400 * 210.00181 * 17 15 13 20 20 H 1.48502 * 109.46794 * 329.99829 * 17 15 13 21 21 C 1.40452 * 119.62836 * 0.02562 * 8 5 4 22 22 C 1.40590 * 121.19265 * 180.02562 * 21 8 5 23 23 C 1.36099 * 119.65343 * 179.97438 * 22 21 8 24 24 C 1.39351 * 120.96108 * 0.03017 * 23 22 21 25 25 C 1.36148 * 120.98635 * 359.97438 * 24 23 22 26 26 C 1.40410 * 119.69291 * 359.70050 * 25 24 23 27 27 H 1.09002 * 109.47382 * 59.99890 * 1 2 3 28 28 H 1.09001 * 109.46938 * 299.99876 * 1 2 3 29 29 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.07994 * 119.56185 * 0.02562 * 4 3 2 31 31 H 1.08995 * 109.47131 * 300.00379 * 7 6 5 32 32 H 1.08999 * 109.46993 * 60.00500 * 7 6 5 33 33 H 1.09004 * 109.47147 * 179.97438 * 7 6 5 34 34 H 1.08999 * 109.47005 * 210.00042 * 9 8 5 35 35 H 1.09006 * 109.46684 * 330.00262 * 9 8 5 36 36 H 1.09004 * 109.47259 * 59.99164 * 11 10 9 37 37 H 1.08996 * 109.47418 * 179.97438 * 11 10 9 38 38 H 1.09009 * 109.46929 * 299.99849 * 11 10 9 39 39 H 1.09004 * 109.47392 * 290.00193 * 12 10 9 40 40 H 1.09004 * 109.47236 * 50.00295 * 12 10 9 41 41 H 0.96997 * 120.00466 * 180.02562 * 16 15 13 42 42 H 1.07996 * 120.16784 * 0.02562 * 22 21 8 43 43 H 1.08005 * 119.51575 * 179.97438 * 23 22 21 44 44 H 1.08005 * 119.50854 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.14747 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.3042 2.3565 0.0005 5 6 1.9217 3.6093 0.0000 6 8 1.1590 4.7337 0.0000 7 6 -0.2589 4.5557 0.0000 8 6 3.2941 3.7184 -0.0001 9 6 3.9462 5.0771 -0.0001 10 7 4.1581 5.5184 1.3848 11 6 5.1369 4.6611 2.0667 12 6 4.5703 6.9276 1.4310 13 6 4.5404 7.4133 2.8573 14 1 4.2443 6.7424 3.6501 15 6 4.8899 8.7145 3.1499 16 7 4.8643 9.1383 4.3947 17 14 5.4013 9.8753 1.7786 18 1 4.2036 10.5777 1.2522 19 1 6.3668 10.8717 2.3078 20 1 6.0403 9.0990 0.6856 21 6 4.0830 2.5564 -0.0003 22 6 5.4870 2.6296 0.0001 23 6 6.2210 1.4835 0.0004 24 6 5.6014 0.2354 -0.0002 25 6 4.2443 0.1265 -0.0007 26 6 3.4535 1.2868 0.0058 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2261 2.2938 0.0014 31 1 -0.5554 4.0006 -0.8899 32 1 -0.5554 4.0007 0.8900 33 1 -0.7474 5.5302 0.0005 34 1 4.9056 5.0195 -0.5141 35 1 3.3008 5.7897 -0.5139 36 1 6.0885 4.7035 1.5367 37 1 5.2753 5.0103 3.0899 38 1 4.7734 3.6335 2.0791 39 1 5.5816 7.0236 1.0357 40 1 3.8866 7.5262 0.8290 41 1 5.1099 10.0538 4.6006 42 1 5.9804 3.5903 0.0009 43 1 7.2995 1.5423 0.0003 44 1 6.2068 -0.6591 -0.0003 45 1 3.7783 -0.8477 -0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249442844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:07 Heat of formation + Delta-G solvation = -34.670832 kcal Electronic energy + Delta-G solvation = -26784.419613 eV Core-core repulsion = 23153.307931 eV Total energy + Delta-G solvation = -3631.111682 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.10602 -39.95892 -39.71684 -38.23437 -35.97372 -34.71493 -33.25851 -31.11160 -30.76300 -29.74351 -28.65242 -28.25616 -27.00167 -25.22303 -24.15327 -23.57988 -22.49453 -21.10762 -19.67970 -19.05612 -18.59253 -18.24262 -17.25362 -17.05690 -16.66101 -16.41509 -16.10880 -15.96578 -15.91098 -15.57510 -15.37463 -15.09758 -14.76400 -14.45773 -14.15987 -14.14918 -13.86996 -13.35340 -13.21997 -12.94682 -12.80750 -12.68769 -12.50495 -12.45682 -12.37677 -12.29329 -12.08506 -11.97771 -11.89475 -11.65137 -11.40864 -10.99450 -10.76839 -10.37284 -9.42545 -8.94796 -8.30230 -8.26666 -6.29930 -0.38218 0.06607 1.07436 1.35119 1.36530 1.47716 2.00181 2.16168 2.35629 2.43120 3.04714 3.06702 3.48795 3.65098 3.82379 3.90994 3.95133 4.11593 4.20381 4.26468 4.35334 4.38182 4.39031 4.42406 4.44064 4.49639 4.56062 4.63805 4.67281 4.70002 4.72941 4.85936 4.91940 4.94860 5.03990 5.14834 5.17719 5.23527 5.31295 5.52048 5.54384 5.63731 5.72655 6.01259 6.05538 6.18169 6.40239 6.52379 6.68908 6.75342 7.33369 8.89910 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015192 B = 0.004120 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.576997 B = 6794.372293 C = 8025.488320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.315 6.315 3 C 0.181 3.819 4 C -0.298 4.298 5 C 0.176 3.824 6 O -0.326 6.326 7 C 0.018 3.982 8 C -0.171 4.171 9 C 0.114 3.886 10 N -0.538 5.538 11 C 0.049 3.951 12 C 0.173 3.827 13 C -0.513 4.513 14 H 0.034 0.966 15 C 0.009 3.991 16 N -0.949 5.949 17 Si 0.947 3.053 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.252 1.252 21 C 0.015 3.985 22 C -0.144 4.144 23 C -0.090 4.090 24 C -0.140 4.140 25 C -0.079 4.079 26 C -0.122 4.122 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.129 0.871 30 H 0.161 0.839 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.111 0.889 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.025 0.975 37 H 0.043 0.957 38 H 0.065 0.935 39 H -0.011 1.011 40 H 0.025 0.975 41 H 0.267 0.733 42 H 0.123 0.877 43 H 0.146 0.854 44 H 0.153 0.847 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.429 -21.185 -14.564 26.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.228 6.228 3 C 0.134 3.866 4 C -0.317 4.317 5 C 0.129 3.871 6 O -0.239 6.239 7 C -0.076 4.076 8 C -0.173 4.173 9 C -0.013 4.013 10 N -0.262 5.262 11 C -0.099 4.099 12 C 0.046 3.954 13 C -0.551 4.551 14 H 0.053 0.947 15 C -0.188 4.188 16 N -0.590 5.590 17 Si 0.771 3.229 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.176 1.176 21 C 0.014 3.986 22 C -0.162 4.162 23 C -0.108 4.108 24 C -0.158 4.158 25 C -0.097 4.097 26 C -0.122 4.122 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.147 0.853 30 H 0.178 0.822 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.129 0.871 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.043 0.957 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.007 0.993 40 H 0.043 0.957 41 H 0.076 0.924 42 H 0.141 0.859 43 H 0.164 0.836 44 H 0.171 0.829 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.737 -21.066 -14.210 26.562 hybrid contribution 0.371 1.191 -0.247 1.272 sum -7.365 -19.874 -14.457 25.656 Atomic orbital electron populations 1.23457 0.76019 1.06160 1.02367 1.86008 1.23705 1.25603 1.87489 1.18452 0.91057 0.84602 0.92512 1.21064 1.01829 0.90890 1.17919 1.18535 0.90209 0.85337 0.92986 1.86191 1.20310 1.29629 1.87776 1.23335 0.77067 1.05109 1.02130 1.18983 0.90826 0.94607 1.12887 1.20629 0.98149 0.93045 0.89480 1.61847 1.46826 1.02896 1.14632 1.22256 0.92634 0.96566 0.98492 1.19934 0.93261 0.86459 0.95712 1.21227 1.44298 0.96835 0.92789 0.94722 1.25827 0.95176 0.99757 0.98047 1.70053 1.50673 1.17925 1.20318 0.85712 0.78968 0.78633 0.79623 1.19006 1.20486 1.17569 1.17560 0.93832 0.90647 0.96548 1.21170 0.92071 0.99879 1.03100 1.21213 1.01235 0.91955 0.96397 1.21112 0.94597 0.98363 1.01722 1.21110 0.94184 0.97296 0.97089 1.17589 0.90649 0.94164 1.09847 0.91377 0.91961 0.85332 0.82164 0.90809 0.92098 0.87078 0.94340 0.91170 0.95673 0.93836 0.91651 0.99338 0.95687 0.92419 0.85941 0.83578 0.82934 0.83775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -6.42 9.70 -91.32 -0.89 -7.30 16 3 C 0.18 4.64 6.66 22.55 0.15 4.79 16 4 C -0.30 -7.65 7.97 22.22 0.18 -7.48 16 5 C 0.18 5.70 6.65 22.48 0.15 5.85 16 6 O -0.33 -10.59 9.48 -92.12 -0.87 -11.47 16 7 C 0.02 0.37 9.80 113.37 1.11 1.48 16 8 C -0.17 -6.01 4.92 -19.46 -0.10 -6.11 16 9 C 0.11 4.42 4.66 85.56 0.40 4.82 16 10 N -0.54 -24.79 4.74 -931.64 -4.42 -29.21 16 11 C 0.05 2.08 7.88 127.69 1.01 3.09 16 12 C 0.17 8.92 3.79 85.56 0.32 9.24 16 13 C -0.51 -31.21 9.01 25.60 0.23 -30.98 16 14 H 0.03 2.36 7.37 -2.91 -0.02 2.34 16 15 C 0.01 0.54 5.47 84.65 0.46 1.00 16 16 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 17 Si 0.95 45.52 27.47 68.60 1.88 47.40 16 18 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 21 C 0.01 0.46 4.82 -21.31 -0.10 0.36 16 22 C -0.14 -4.13 7.41 22.35 0.17 -3.97 16 23 C -0.09 -2.03 9.95 22.04 0.22 -1.81 16 24 C -0.14 -2.81 9.95 22.05 0.22 -2.59 16 25 C -0.08 -1.80 9.55 22.31 0.21 -1.59 16 26 C -0.12 -3.43 5.75 -21.21 -0.12 -3.55 16 27 H 0.07 0.64 7.65 -2.39 -0.02 0.63 16 28 H 0.06 0.68 7.65 -2.39 -0.02 0.67 16 29 H 0.13 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.16 3.01 4.35 -2.91 -0.01 3.00 16 31 H 0.07 1.13 7.64 -2.39 -0.02 1.11 16 32 H 0.06 1.14 7.63 -2.39 -0.02 1.12 16 33 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.04 1.40 6.40 -2.39 -0.02 1.38 16 35 H 0.07 2.78 7.29 -2.38 -0.02 2.76 16 36 H 0.02 0.98 6.81 -2.38 -0.02 0.97 16 37 H 0.04 2.11 6.76 -2.39 -0.02 2.09 16 38 H 0.06 2.60 5.63 -2.38 -0.01 2.58 16 39 H -0.01 -0.56 7.18 -2.39 -0.02 -0.57 16 40 H 0.03 1.28 7.36 -2.38 -0.02 1.26 16 41 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 42 H 0.12 3.67 4.63 -2.91 -0.01 3.66 16 43 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 44 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 45 H 0.14 2.70 7.60 -2.91 -0.02 2.67 16 Total: -1.00 -76.47 352.81 2.58 -73.90 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.95 Total: 13.49 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 5.62 Total: -26.16 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -4.12 Total: -89.85 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -1.76 Total: -18.77 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.88 Total: 47.40 kcal Total: -76.47 2.58 -73.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249442844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.227 kcal (2) G-P(sol) polarization free energy of solvation -76.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds