Wall clock time and date at job start Tue Mar 31 2020 12:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39657 * 120.14777 * 85.26475 * 3 2 1 5 5 C 1.37928 * 119.84151 * 180.02562 * 4 3 2 6 6 C 1.38378 * 120.15554 * 0.02562 * 5 4 3 7 7 C 1.38345 * 120.30569 * 359.97438 * 6 5 4 8 8 C 1.50693 * 119.92531 * 179.72567 * 7 6 5 9 9 H 1.09005 * 109.47218 * 205.00042 * 8 7 6 10 10 O 1.42907 * 109.46908 * 324.99416 * 8 7 6 11 11 C 1.53000 * 109.47682 * 84.99782 * 8 7 6 12 12 N 1.46901 * 109.47148 * 180.02562 * 11 8 7 13 13 C 1.46956 * 110.99615 * 293.79440 * 12 11 8 14 14 C 1.53053 * 109.36269 * 176.81559 * 13 12 11 15 15 N 1.46958 * 109.36220 * 58.40209 * 14 13 12 16 16 C 1.46906 * 110.99496 * 176.81219 * 15 14 13 17 17 C 1.50697 * 109.47340 * 293.80019 * 16 15 14 18 18 H 1.07995 * 120.00130 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99887 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00428 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99826 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47274 * 89.99822 * 21 19 17 23 23 H 1.48507 * 109.46905 * 209.99592 * 21 19 17 24 24 H 1.48498 * 109.47303 * 329.99525 * 21 19 17 25 25 C 1.46956 * 110.88177 * 300.67659 * 15 14 13 26 26 C 1.46957 * 110.99796 * 170.00235 * 12 11 8 27 27 C 1.37974 * 120.15009 * 359.97438 * 7 6 5 28 28 H 1.07991 * 120.07879 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.91937 * 179.97438 * 5 4 3 30 30 H 1.07998 * 119.84810 * 180.02562 * 6 5 4 31 31 H 0.96698 * 113.99961 * 60.00799 * 10 8 7 32 32 H 1.09001 * 109.46555 * 300.00207 * 11 8 7 33 33 H 1.09000 * 109.46935 * 60.00171 * 11 8 7 34 34 H 1.08996 * 109.49540 * 296.78406 * 13 12 11 35 35 H 1.09002 * 109.48772 * 56.85571 * 13 12 11 36 36 H 1.09005 * 109.48852 * 298.43880 * 14 13 12 37 37 H 1.08994 * 109.49350 * 178.37503 * 14 13 12 38 38 H 1.09005 * 109.47387 * 53.80373 * 16 15 14 39 39 H 1.09007 * 109.46582 * 173.79896 * 16 15 14 40 40 H 0.97000 * 120.00191 * 180.02562 * 20 19 17 41 41 H 1.08991 * 109.49101 * 299.35375 * 25 15 14 42 42 H 1.09002 * 109.48772 * 179.28358 * 25 15 14 43 43 H 1.09003 * 109.48704 * 303.15652 * 26 12 11 44 44 H 1.09005 * 109.48906 * 63.21767 * 26 12 11 45 45 H 1.07994 * 120.07428 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -0.0987 -1.2035 5 6 4.6487 -0.0980 -1.1961 6 6 5.3374 0.0003 0.0000 7 6 4.6488 0.0990 1.1959 8 6 5.4075 0.1994 2.4941 9 1 4.7837 -0.1683 3.3089 10 8 6.5973 -0.5878 2.4125 11 6 5.7794 1.6603 2.7559 12 7 6.5194 1.7579 4.0211 13 6 5.6608 1.4094 5.1617 14 6 6.4875 1.4461 6.4492 15 7 7.0655 2.7866 6.6190 16 6 7.8055 2.8843 7.8843 17 6 6.8447 2.7627 9.0389 18 1 5.7898 2.6269 8.8516 19 6 7.3123 2.8259 10.3343 20 7 8.5968 2.9917 10.5625 21 14 6.1213 2.6745 11.7656 22 1 5.9856 1.2459 12.1476 23 1 6.6370 3.4495 12.9227 24 1 4.7948 3.2078 11.3643 25 6 7.9241 3.1351 5.4785 26 6 7.0973 3.0984 4.1910 27 6 3.2691 0.1006 1.2031 28 1 2.7332 -0.1768 -2.1377 29 1 5.1924 -0.1753 -2.1261 30 1 6.4173 0.0008 0.0000 31 1 7.2010 -0.3163 1.7076 32 1 6.4032 2.0279 1.9411 33 1 4.8718 2.2607 2.8182 34 1 4.8432 2.1265 5.2340 35 1 5.2550 0.4079 5.0186 36 1 7.2889 0.7097 6.3879 37 1 5.8462 1.2161 7.2999 38 1 8.5413 2.0818 7.9378 39 1 8.3138 3.8472 7.9344 40 1 8.9257 3.0358 11.4740 41 1 8.7417 2.4180 5.4062 42 1 8.3299 4.1366 5.6215 43 1 7.7387 3.3284 3.3402 44 1 6.2960 3.8348 4.2523 45 1 2.7329 0.1781 2.1373 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364782229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:24 Heat of formation + Delta-G solvation = 20.606480 kcal Electronic energy + Delta-G solvation = -25358.737309 eV Core-core repulsion = 21762.315382 eV Total energy + Delta-G solvation = -3596.421926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.40107 -38.88611 -37.42788 -36.52177 -34.80112 -32.59541 -32.13166 -31.77988 -30.47620 -29.16720 -27.02874 -25.05339 -24.29176 -23.27386 -22.95606 -21.72745 -21.22506 -19.25277 -18.99249 -17.11888 -16.54083 -16.44001 -16.28987 -15.63221 -15.18857 -15.00149 -14.55786 -14.50339 -14.35894 -14.24544 -14.00600 -13.64800 -13.57777 -13.32750 -13.12978 -13.08369 -12.78249 -12.25078 -12.07409 -11.96379 -11.90831 -11.72336 -11.37292 -11.16523 -10.84296 -10.72468 -10.67490 -10.45795 -10.31133 -10.21181 -9.73104 -9.47900 -9.27957 -9.16183 -8.43301 -8.14876 -7.21711 -6.01842 -4.03245 0.27926 0.75763 2.25635 2.48929 3.32270 3.35619 3.38477 3.40158 3.42565 3.81684 4.21005 4.31469 4.40514 4.43065 4.53332 4.64095 4.72105 4.90762 4.96950 4.99067 5.18366 5.28584 5.33831 5.38087 5.47563 5.52639 5.54413 5.73611 5.74998 5.78276 5.81163 5.89538 6.00199 6.06788 6.18959 6.25801 6.43300 6.60372 6.71156 7.06563 7.14916 7.16582 7.35105 7.38446 7.47969 7.80844 8.10136 8.21835 8.56291 9.04256 9.60987 11.09029 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020030 B = 0.002461 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.537259 B =11375.705535 C =12285.656477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.253 3.747 3 C -0.027 4.027 4 C -0.073 4.073 5 C -0.116 4.116 6 C -0.080 4.080 7 C -0.112 4.112 8 C 0.151 3.849 9 H 0.111 0.889 10 O -0.535 6.535 11 C 0.028 3.972 12 N -0.528 5.528 13 C 0.056 3.944 14 C 0.068 3.932 15 N -0.539 5.539 16 C 0.194 3.806 17 C -0.507 4.507 18 H 0.062 0.938 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.897 3.103 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 C 0.057 3.943 26 C 0.062 3.938 27 C -0.060 4.060 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.370 0.630 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.030 0.970 37 H 0.085 0.915 38 H -0.008 1.008 39 H 0.029 0.971 40 H 0.261 0.739 41 H 0.031 0.969 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.038 0.962 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.995 -5.527 -25.400 26.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.090 5.090 2 C -0.062 4.062 3 C -0.030 4.030 4 C -0.093 4.093 5 C -0.134 4.134 6 C -0.099 4.099 7 C -0.113 4.113 8 C 0.091 3.909 9 H 0.129 0.871 10 O -0.339 6.339 11 C -0.101 4.101 12 N -0.253 5.253 13 C -0.072 4.072 14 C -0.060 4.060 15 N -0.265 5.265 16 C 0.069 3.931 17 C -0.546 4.546 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.725 3.275 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.198 1.198 25 C -0.072 4.072 26 C -0.066 4.066 27 C -0.081 4.081 28 H 0.151 0.849 29 H 0.153 0.847 30 H 0.149 0.851 31 H 0.217 0.783 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.104 0.896 38 H 0.010 0.990 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.056 0.944 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.899 -5.799 -24.723 26.314 hybrid contribution 0.090 0.315 0.355 0.483 sum -6.810 -5.484 -24.368 25.889 Atomic orbital electron populations 1.81281 1.12057 1.08599 1.07072 1.25710 0.92666 0.93860 0.93966 1.15959 0.84306 1.07724 0.95014 1.21205 0.94486 0.97025 0.96601 1.21080 0.93560 1.00204 0.98543 1.21182 1.00581 0.96436 0.91689 1.20600 0.93775 1.00281 0.96668 1.20853 0.86142 0.91131 0.92788 0.87121 1.86713 1.31269 1.57847 1.58097 1.22763 0.97780 0.95726 0.93805 1.62109 1.34485 1.27572 1.01121 1.22308 0.94609 0.99730 0.90579 1.21966 0.97994 0.90582 0.95504 1.62292 1.35371 1.25781 1.03032 1.19697 0.92704 0.96359 0.84368 1.21147 0.94264 1.49120 0.90021 0.91962 1.24989 0.95184 0.95475 0.98979 1.69957 1.12829 1.50382 1.20631 0.86514 0.81176 0.77992 0.81827 1.20719 1.21275 1.19819 1.22050 0.94396 1.00410 0.90384 1.22164 0.97924 0.88527 0.97986 1.21049 0.93528 0.96429 0.97077 0.84949 0.84673 0.85114 0.78265 0.90530 0.93902 0.94453 0.91048 0.95128 0.89639 0.99034 0.95271 0.92935 0.95045 0.91079 0.91297 0.94402 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.86 18.54 41.84 0.78 -4.09 16 2 C 0.25 2.32 15.33 -22.48 -0.34 1.98 16 3 C -0.03 -0.19 5.73 -106.93 -0.61 -0.80 16 4 C -0.07 -0.38 9.76 -39.17 -0.38 -0.76 16 5 C -0.12 -0.50 10.03 -39.64 -0.40 -0.90 16 6 C -0.08 -0.41 9.32 -39.49 -0.37 -0.78 16 7 C -0.11 -0.76 5.00 -104.68 -0.52 -1.29 16 8 C 0.15 1.29 3.09 -27.89 -0.09 1.21 16 9 H 0.11 1.04 6.40 -51.93 -0.33 0.71 16 10 O -0.53 -5.18 13.00 -35.23 -0.46 -5.64 16 11 C 0.03 0.27 4.60 -3.82 -0.02 0.25 16 12 N -0.53 -7.07 4.58 -234.46 -1.07 -8.14 16 13 C 0.06 0.84 5.41 -3.77 -0.02 0.82 16 14 C 0.07 1.33 5.43 -3.76 -0.02 1.31 16 15 N -0.54 -11.60 4.70 -235.90 -1.11 -12.71 16 16 C 0.19 5.06 4.72 -4.97 -0.02 5.04 16 17 C -0.51 -14.20 8.47 -34.44 -0.29 -14.49 16 18 H 0.06 1.72 7.13 -52.49 -0.37 1.35 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 21 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.06 1.01 5.61 -3.77 -0.02 0.99 16 26 C 0.06 0.87 5.61 -3.77 -0.02 0.85 16 27 C -0.06 -0.42 9.38 -39.17 -0.37 -0.79 16 28 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 29 H 0.14 0.28 8.06 -52.48 -0.42 -0.15 16 30 H 0.13 0.41 6.60 -52.49 -0.35 0.06 16 31 H 0.37 2.27 7.38 45.56 0.34 2.60 16 32 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 33 H 0.04 0.42 8.12 -51.93 -0.42 -0.01 16 34 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.96 6.34 -51.93 -0.33 0.63 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.78 6.79 -51.93 -0.35 1.43 16 38 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 39 H 0.03 0.81 8.03 -51.93 -0.42 0.39 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 43 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 44 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 372.03 15.07 5.61 5.61 Total: -1.00 -33.02 372.03 -10.15 -43.17 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -6.01 Total: -2.90 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -3.60 Total: -5.90 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.67 Total: -50.93 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.46 Total: -5.64 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.02 -10.15 -43.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364782229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.774 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds