Wall clock time and date at job start Tue Mar 31 2020 12:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39657 * 120.14777 * 85.26475 * 3 2 1 5 5 C 1.37928 * 119.84151 * 180.02562 * 4 3 2 6 6 C 1.38378 * 120.15554 * 0.02562 * 5 4 3 7 7 C 1.38345 * 120.30569 * 359.97438 * 6 5 4 8 8 C 1.50693 * 119.92531 * 179.72567 * 7 6 5 9 9 H 1.09005 * 109.47218 * 205.00042 * 8 7 6 10 10 O 1.42907 * 109.46908 * 324.99416 * 8 7 6 11 11 C 1.53000 * 109.47682 * 84.99782 * 8 7 6 12 12 N 1.46901 * 109.47148 * 180.02562 * 11 8 7 13 13 C 1.46956 * 110.99615 * 293.79440 * 12 11 8 14 14 C 1.53053 * 109.36269 * 176.81559 * 13 12 11 15 15 N 1.46958 * 109.36220 * 58.40209 * 14 13 12 16 16 C 1.46906 * 110.99496 * 176.81219 * 15 14 13 17 17 C 1.50697 * 109.47340 * 293.80019 * 16 15 14 18 18 H 1.07995 * 120.00130 * 359.97438 * 17 16 15 19 19 C 1.37873 * 119.99887 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00428 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99826 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47274 * 89.99822 * 21 19 17 23 23 H 1.48507 * 109.46905 * 209.99592 * 21 19 17 24 24 H 1.48498 * 109.47303 * 329.99525 * 21 19 17 25 25 C 1.46956 * 110.88177 * 300.67659 * 15 14 13 26 26 C 1.46957 * 110.99796 * 170.00235 * 12 11 8 27 27 C 1.37974 * 120.15009 * 359.97438 * 7 6 5 28 28 H 1.07991 * 120.07879 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.91937 * 179.97438 * 5 4 3 30 30 H 1.07998 * 119.84810 * 180.02562 * 6 5 4 31 31 H 0.96698 * 113.99961 * 60.00799 * 10 8 7 32 32 H 1.09001 * 109.46555 * 300.00207 * 11 8 7 33 33 H 1.09000 * 109.46935 * 60.00171 * 11 8 7 34 34 H 1.08996 * 109.49540 * 296.78406 * 13 12 11 35 35 H 1.09002 * 109.48772 * 56.85571 * 13 12 11 36 36 H 1.09005 * 109.48852 * 298.43880 * 14 13 12 37 37 H 1.08994 * 109.49350 * 178.37503 * 14 13 12 38 38 H 1.09005 * 109.47387 * 53.80373 * 16 15 14 39 39 H 1.09007 * 109.46582 * 173.79896 * 16 15 14 40 40 H 0.97000 * 120.00191 * 180.02562 * 20 19 17 41 41 H 1.08991 * 109.49101 * 299.35375 * 25 15 14 42 42 H 1.09002 * 109.48772 * 179.28358 * 25 15 14 43 43 H 1.09003 * 109.48704 * 303.15652 * 26 12 11 44 44 H 1.09005 * 109.48906 * 63.21767 * 26 12 11 45 45 H 1.07994 * 120.07428 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -0.0987 -1.2035 5 6 4.6487 -0.0980 -1.1961 6 6 5.3374 0.0003 0.0000 7 6 4.6488 0.0990 1.1959 8 6 5.4075 0.1994 2.4941 9 1 4.7837 -0.1683 3.3089 10 8 6.5973 -0.5878 2.4125 11 6 5.7794 1.6603 2.7559 12 7 6.5194 1.7579 4.0211 13 6 5.6608 1.4094 5.1617 14 6 6.4875 1.4461 6.4492 15 7 7.0655 2.7866 6.6190 16 6 7.8055 2.8843 7.8843 17 6 6.8447 2.7627 9.0389 18 1 5.7898 2.6269 8.8516 19 6 7.3123 2.8259 10.3343 20 7 8.5968 2.9917 10.5625 21 14 6.1213 2.6745 11.7656 22 1 5.9856 1.2459 12.1476 23 1 6.6370 3.4495 12.9227 24 1 4.7948 3.2078 11.3643 25 6 7.9241 3.1351 5.4785 26 6 7.0973 3.0984 4.1910 27 6 3.2691 0.1006 1.2031 28 1 2.7332 -0.1768 -2.1377 29 1 5.1924 -0.1753 -2.1261 30 1 6.4173 0.0008 0.0000 31 1 7.2010 -0.3163 1.7076 32 1 6.4032 2.0279 1.9411 33 1 4.8718 2.2607 2.8182 34 1 4.8432 2.1265 5.2340 35 1 5.2550 0.4079 5.0186 36 1 7.2889 0.7097 6.3879 37 1 5.8462 1.2161 7.2999 38 1 8.5413 2.0818 7.9378 39 1 8.3138 3.8472 7.9344 40 1 8.9257 3.0358 11.4740 41 1 8.7417 2.4180 5.4062 42 1 8.3299 4.1366 5.6215 43 1 7.7387 3.3284 3.3402 44 1 6.2960 3.8348 4.2523 45 1 2.7329 0.1781 2.1373 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364782229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:23 Heat of formation + Delta-G solvation = -3.599284 kcal Electronic energy + Delta-G solvation = -25359.786950 eV Core-core repulsion = 21762.315382 eV Total energy + Delta-G solvation = -3597.471567 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.97293 -40.02508 -38.30655 -37.29552 -36.19233 -34.50554 -32.82186 -32.23848 -31.82730 -30.46915 -28.47701 -26.38180 -24.96392 -24.57399 -23.88262 -23.08005 -22.23487 -20.60241 -19.61866 -18.48401 -17.74583 -17.23923 -17.01938 -16.80128 -16.33559 -15.99416 -15.81812 -15.78124 -15.37431 -15.13400 -15.06313 -14.81103 -14.68848 -14.33640 -14.16820 -13.89985 -13.84055 -13.43917 -13.39098 -13.01000 -12.81778 -12.69294 -12.65949 -12.44088 -12.34967 -12.24967 -12.14678 -12.04814 -11.70105 -11.48162 -11.17860 -10.91658 -10.62162 -9.91557 -9.77183 -9.23439 -9.00417 -8.20863 -6.31223 -0.19291 0.33901 1.40705 1.42062 1.53640 1.56541 1.90962 2.39904 2.77094 2.82832 2.97144 3.11263 3.32584 3.62241 3.77530 3.90261 3.98298 4.05396 4.14557 4.21497 4.25795 4.36569 4.40604 4.45128 4.52347 4.55534 4.70360 4.73086 4.79344 4.86888 4.97267 4.99567 5.03327 5.05438 5.09861 5.24055 5.29712 5.32807 5.40552 5.53932 5.63780 5.87115 6.02108 6.09275 6.13884 6.36547 6.39854 6.64584 6.84805 6.98577 7.38535 8.90380 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020030 B = 0.002461 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.537259 B =11375.705535 C =12285.656477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.277 3.723 3 C -0.044 4.044 4 C -0.066 4.066 5 C -0.111 4.111 6 C -0.073 4.073 7 C -0.120 4.120 8 C 0.159 3.841 9 H 0.097 0.903 10 O -0.554 6.554 11 C 0.031 3.969 12 N -0.536 5.536 13 C 0.069 3.931 14 C 0.070 3.930 15 N -0.546 5.546 16 C 0.209 3.791 17 C -0.523 4.523 18 H 0.062 0.938 19 C 0.001 3.999 20 N -0.934 5.934 21 Si 0.970 3.030 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.265 1.265 25 C 0.053 3.947 26 C 0.072 3.928 27 C -0.067 4.067 28 H 0.150 0.850 29 H 0.166 0.834 30 H 0.155 0.845 31 H 0.385 0.615 32 H 0.101 0.899 33 H 0.046 0.954 34 H 0.036 0.964 35 H 0.090 0.910 36 H 0.013 0.987 37 H 0.064 0.936 38 H -0.042 1.042 39 H 0.004 0.996 40 H 0.265 0.735 41 H 0.021 0.979 42 H 0.069 0.931 43 H 0.103 0.897 44 H 0.036 0.964 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.277 -5.771 -27.761 28.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.037 4.037 3 C -0.048 4.048 4 C -0.086 4.086 5 C -0.128 4.128 6 C -0.092 4.092 7 C -0.121 4.121 8 C 0.099 3.901 9 H 0.114 0.886 10 O -0.362 6.362 11 C -0.097 4.097 12 N -0.261 5.261 13 C -0.059 4.059 14 C -0.059 4.059 15 N -0.271 5.271 16 C 0.083 3.917 17 C -0.561 4.561 18 H 0.080 0.920 19 C -0.197 4.197 20 N -0.575 5.575 21 Si 0.794 3.206 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.189 1.189 25 C -0.076 4.076 26 C -0.056 4.056 27 C -0.087 4.087 28 H 0.167 0.833 29 H 0.183 0.817 30 H 0.173 0.827 31 H 0.235 0.765 32 H 0.119 0.881 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.108 0.892 36 H 0.032 0.968 37 H 0.083 0.917 38 H -0.024 1.024 39 H 0.022 0.978 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.088 0.912 43 H 0.121 0.879 44 H 0.054 0.946 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.187 -6.044 -27.126 28.705 hybrid contribution 0.300 0.372 1.000 1.108 sum -6.886 -5.672 -26.126 27.607 Atomic orbital electron populations 1.81293 1.13620 1.10875 1.08813 1.26073 0.93004 0.92249 0.92390 1.16030 0.83028 1.09756 0.95947 1.21492 0.95162 0.95512 0.96476 1.21421 0.93103 0.98824 0.99499 1.21515 1.01895 0.94645 0.91138 1.20395 0.93354 1.01852 0.96504 1.20660 0.85909 0.90105 0.93449 0.88565 1.86687 1.31944 1.58345 1.59180 1.22861 0.97927 0.96727 0.92139 1.62077 1.34943 1.27032 1.02001 1.22108 0.93708 1.00949 0.89165 1.21943 0.97489 0.88950 0.97484 1.62231 1.35335 1.27073 1.02442 1.19342 0.91961 0.93601 0.86832 1.21443 0.94471 1.49190 0.91032 0.91981 1.25931 0.97001 0.94829 1.01973 1.70086 1.14816 1.51115 1.21478 0.85376 0.78895 0.78334 0.77971 1.19793 1.20666 1.18905 1.22177 0.94506 0.99859 0.91034 1.22084 0.97844 0.89008 0.96656 1.21077 0.93912 0.96635 0.97107 0.83274 0.81689 0.82727 0.76489 0.88074 0.93581 0.94602 0.89176 0.96850 0.91739 1.02393 0.97806 0.92658 0.96103 0.91210 0.87864 0.94552 0.84996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.14 18.54 19.00 0.35 -10.79 16 2 C 0.28 4.95 15.33 88.33 1.35 6.30 16 3 C -0.04 -0.54 5.73 -21.36 -0.12 -0.66 16 4 C -0.07 -0.48 9.76 22.54 0.22 -0.26 16 5 C -0.11 -0.48 10.03 22.23 0.22 -0.26 16 6 C -0.07 -0.45 9.32 22.33 0.21 -0.24 16 7 C -0.12 -1.30 5.00 -19.90 -0.10 -1.40 16 8 C 0.16 2.34 3.09 29.85 0.09 2.43 16 9 H 0.10 1.68 6.40 -2.38 -0.02 1.66 16 10 O -0.55 -9.28 13.00 -148.98 -1.94 -11.21 16 11 C 0.03 0.50 4.60 86.30 0.40 0.90 16 12 N -0.54 -13.26 4.58 -895.70 -4.10 -17.36 16 13 C 0.07 2.02 5.41 86.31 0.47 2.49 16 14 C 0.07 2.79 5.43 86.31 0.47 3.26 16 15 N -0.55 -24.19 4.70 -900.26 -4.23 -28.42 16 16 C 0.21 11.47 4.72 85.56 0.40 11.88 16 17 C -0.52 -30.20 8.47 25.60 0.22 -29.98 16 18 H 0.06 3.51 7.13 -2.91 -0.02 3.49 16 19 C 0.00 0.04 5.46 84.65 0.46 0.50 16 20 N -0.93 -57.04 13.29 21.45 0.28 -56.75 16 21 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 24 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 25 C 0.05 1.90 5.61 86.31 0.48 2.38 16 26 C 0.07 1.88 5.61 86.31 0.48 2.37 16 27 C -0.07 -0.83 9.38 22.54 0.21 -0.61 16 28 H 0.15 0.56 8.06 -2.92 -0.02 0.54 16 29 H 0.17 -0.22 8.06 -2.91 -0.02 -0.24 16 30 H 0.16 0.18 6.60 -2.91 -0.02 0.17 16 31 H 0.39 3.35 7.38 -74.06 -0.55 2.80 16 32 H 0.10 1.17 8.03 -2.39 -0.02 1.15 16 33 H 0.05 0.76 8.12 -2.39 -0.02 0.74 16 34 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 2.32 6.34 -2.39 -0.02 2.31 16 36 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.06 2.79 6.79 -2.39 -0.02 2.78 16 38 H -0.04 -2.51 8.12 -2.38 -0.02 -2.53 16 39 H 0.00 0.23 8.03 -2.38 -0.02 0.21 16 40 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 43 H 0.10 2.04 8.07 -2.39 -0.02 2.03 16 44 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.13 1.61 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -74.59 372.03 -1.68 -76.27 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: 0.45 Total: 2.39 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 5.47 Total: -0.91 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -7.69 Total: -113.33 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -1.94 Total: -11.21 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -74.59 -1.68 -76.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364782229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.667 kcal (2) G-P(sol) polarization free energy of solvation -74.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds