Wall clock time and date at job start Tue Mar 31 2020 12:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48509 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47167 * 299.99601 * 3 2 1 6 6 H 1.48497 * 109.47483 * 59.99896 * 3 2 1 7 7 C 1.39893 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99671 * 175.56381 * 7 2 1 9 9 C 1.41158 * 120.00244 * 355.56113 * 7 2 1 10 10 C 1.40860 * 120.16433 * 214.78221 * 9 7 2 11 11 C 1.36372 * 119.82925 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.17026 * 359.97001 * 11 10 9 13 13 N 1.39243 * 119.83829 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99206 * 35.28137 * 13 12 11 15 15 O 1.21580 * 120.00444 * 355.97913 * 14 13 12 16 16 N 1.34777 * 119.99529 * 175.70789 * 14 13 12 17 17 C 1.47045 * 125.43463 * 179.71958 * 16 14 13 18 18 C 1.55141 * 105.82715 * 160.44742 * 17 16 14 19 19 H 1.09000 * 111.53489 * 150.97755 * 18 17 16 20 20 C 1.52981 * 108.56332 * 274.15728 * 18 17 16 21 21 C 1.52909 * 109.44709 * 165.06621 * 20 18 17 22 22 N 1.46497 * 108.66615 * 296.10120 * 21 20 18 23 23 C 1.44018 * 113.11866 * 60.85996 * 22 21 20 24 24 C 1.50004 * 116.07157 * 312.16849 * 23 22 21 25 25 H 1.09000 * 107.52406 * 157.97635 * 24 23 22 26 26 C 1.47093 * 125.43433 * 0.02562 * 16 14 13 27 27 C 1.39488 * 120.32903 * 0.30375 * 12 11 10 28 28 C 1.36377 * 120.16631 * 359.44094 * 27 12 11 29 29 H 0.96997 * 119.99974 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.08416 * 359.97438 * 10 9 7 31 31 H 1.08008 * 119.91719 * 180.02562 * 11 10 9 32 32 H 0.96990 * 120.00035 * 215.28183 * 13 12 11 33 33 H 1.08991 * 110.16132 * 279.66076 * 17 16 14 34 34 H 1.08997 * 110.15914 * 41.43920 * 17 16 14 35 35 H 1.09001 * 109.47508 * 285.06278 * 20 18 17 36 36 H 1.09003 * 109.47522 * 45.07485 * 20 18 17 37 37 H 1.08996 * 109.60770 * 55.85367 * 21 20 18 38 38 H 1.08999 * 109.60569 * 176.18044 * 21 20 18 39 39 H 1.00907 * 111.00070 * 296.33622 * 22 21 20 40 40 H 1.09001 * 109.08832 * 189.50381 * 23 22 21 41 41 H 1.09001 * 106.71156 * 72.98308 * 23 22 21 42 42 H 1.08998 * 109.92701 * 298.87091 * 26 16 14 43 43 H 1.09002 * 109.92776 * 59.99321 * 26 16 14 44 44 H 1.07998 * 119.91017 * 179.69753 * 27 12 11 45 45 H 1.07997 * 120.08302 * 180.25459 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7029 1.3464 0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8840 2.3965 1.2124 7 6 2.0083 -1.2115 0.0005 8 1 3.0859 -1.2129 -0.0718 9 6 1.3057 -2.4321 0.0957 10 6 1.8649 -3.5179 0.7976 11 6 1.1804 -4.6941 0.8848 12 6 -0.0706 -4.8235 0.2817 13 7 -0.7637 -6.0275 0.3755 14 6 -0.6813 -6.7666 1.4996 15 8 0.0549 -6.4195 2.4028 16 7 -1.4192 -7.8874 1.6247 17 6 -1.4183 -8.7829 2.7910 18 6 -2.7335 -9.6005 2.6977 19 1 -2.6267 -10.5839 3.1556 20 6 -3.8552 -8.7955 3.3565 21 6 -5.2078 -9.3879 2.9596 22 7 -5.3785 -9.2386 1.5122 23 6 -4.3678 -9.9254 0.7499 24 6 -2.9496 -9.7043 1.1855 25 1 -2.3585 -10.5425 0.8167 26 6 -2.3490 -8.4135 0.6137 27 6 -0.6283 -3.7547 -0.4198 28 6 0.0420 -2.5705 -0.5112 29 1 -0.4850 0.8400 -0.0004 30 1 2.8337 -3.4192 1.2647 31 1 1.6077 -5.5274 1.4229 32 1 -1.3057 -6.3343 -0.3680 33 1 -0.5561 -9.4485 2.7530 34 1 -1.4037 -8.2002 3.7120 35 1 -3.7442 -8.8369 4.4401 36 1 -3.8013 -7.7585 3.0251 37 1 -5.2360 -10.4449 3.2240 38 1 -6.0058 -8.8591 3.4808 39 1 -5.4115 -8.2647 1.2505 40 1 -4.4536 -9.6364 -0.2976 41 1 -4.5875 -10.9903 0.8259 42 1 -3.1401 -7.6883 0.4234 43 1 -1.8113 -8.6275 -0.3100 44 1 -1.5952 -3.8639 -0.8883 45 1 -0.3929 -1.7425 -1.0512 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:49 Heat of formation + Delta-G solvation = -2.425792 kcal Electronic energy + Delta-G solvation = -26051.073648 eV Core-core repulsion = 22453.652967 eV Total energy + Delta-G solvation = -3597.420681 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.90852 -39.31459 -37.37147 -35.83973 -34.41020 -33.01570 -32.32894 -31.46473 -29.54686 -28.78876 -27.90175 -25.64030 -24.47221 -23.05161 -22.51741 -21.34153 -20.70288 -19.69481 -19.31201 -17.97804 -17.25631 -16.67907 -16.23627 -16.04788 -15.30711 -15.10125 -14.91412 -14.62296 -14.16094 -14.00101 -13.81708 -13.34043 -13.12317 -12.78458 -12.66914 -12.63733 -12.28534 -12.16555 -12.05925 -11.67622 -11.63079 -11.42252 -11.31309 -11.13848 -10.94685 -10.77615 -10.70492 -10.62768 -10.05408 -9.51907 -9.43439 -9.21772 -8.87500 -8.77558 -8.52646 -7.51081 -6.80350 -6.58203 -4.30356 2.65655 2.86534 3.11047 3.11491 3.16479 3.18809 3.66265 3.97889 4.00957 4.05626 4.11317 4.36407 4.50366 4.72393 4.73988 4.76217 4.96518 5.03490 5.07312 5.24034 5.31499 5.38839 5.49433 5.55964 5.64378 5.66711 5.69214 5.72295 5.84339 5.98816 6.19059 6.27150 6.47712 6.78907 6.79268 6.92865 7.00723 7.08200 7.19364 7.29217 7.42679 7.68650 7.89260 7.97948 8.12230 8.33933 8.44562 8.67443 8.94777 8.96900 9.10661 10.33127 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028314 B = 0.002606 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.663028 B =10742.467252 C =11058.739671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.098 3.902 10 C -0.203 4.203 11 C -0.087 4.087 12 C 0.023 3.977 13 N -0.664 5.664 14 C 0.712 3.288 15 O -0.574 6.574 16 N -0.639 5.639 17 C 0.131 3.869 18 C -0.090 4.090 19 H 0.094 0.906 20 C -0.153 4.153 21 C 0.060 3.940 22 N -0.682 5.682 23 C 0.073 3.927 24 C -0.127 4.127 25 H 0.080 0.920 26 C 0.107 3.893 27 C -0.123 4.123 28 C -0.140 4.140 29 H 0.276 0.724 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.390 0.610 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.340 0.660 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.406 -18.216 1.195 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.095 3.905 10 C -0.223 4.223 11 C -0.107 4.107 12 C -0.070 4.070 13 N -0.310 5.310 14 C 0.415 3.585 15 O -0.451 6.451 16 N -0.379 5.379 17 C 0.007 3.993 18 C -0.109 4.109 19 H 0.112 0.888 20 C -0.192 4.192 21 C -0.069 4.069 22 N -0.310 5.310 23 C -0.058 4.058 24 C -0.148 4.148 25 H 0.099 0.901 26 C -0.016 4.016 27 C -0.143 4.143 28 C -0.160 4.160 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.224 0.776 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.158 0.842 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.108 0.892 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.458 -18.246 1.819 21.109 hybrid contribution 0.836 1.180 -0.142 1.453 sum -9.622 -17.065 1.677 19.663 Atomic orbital electron populations 1.69777 1.07251 1.28489 1.38597 1.25869 0.94936 1.01119 0.92634 0.86158 0.80592 0.80932 0.78339 1.18623 1.20040 1.20038 1.19516 0.94719 0.90206 1.44783 0.90623 1.17718 0.92325 0.92032 0.88406 1.20807 1.01185 0.94918 1.05441 1.20417 0.92765 0.97931 0.99561 1.17092 0.93739 0.84986 1.11165 1.42116 1.51549 1.22062 1.15231 1.15545 0.80740 0.78978 0.83229 1.90915 1.42306 1.70898 1.40967 1.47448 1.45747 1.25448 1.19285 1.22011 0.96391 0.91504 0.89362 1.21961 0.94785 0.99286 0.94850 0.88798 1.22242 0.95672 1.00090 1.01174 1.21896 0.95600 1.01460 0.87944 1.59779 1.47005 1.18435 1.05758 1.20663 0.87181 1.00132 0.97857 1.21674 0.99050 0.98016 0.96067 0.90123 1.21868 0.92555 0.95108 0.92106 1.20282 0.98346 0.93042 1.02676 1.21170 0.97300 0.95414 1.02097 0.91285 0.88623 0.87439 0.77629 0.92140 0.90543 0.90997 0.91357 0.90790 0.90419 0.84229 0.90473 0.91217 0.92129 0.91562 0.89231 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.45 10.60 55.55 0.59 -20.86 16 2 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 3 Si 0.91 19.29 29.56 -169.99 -5.03 14.27 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 6 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.46 -12.50 9.02 -37.85 -0.34 -12.84 16 8 H 0.08 1.98 7.85 -52.48 -0.41 1.56 16 9 C 0.10 2.67 5.55 -106.80 -0.59 2.07 16 10 C -0.20 -5.29 9.74 -39.26 -0.38 -5.67 16 11 C -0.09 -2.15 8.61 -39.79 -0.34 -2.49 16 12 C 0.02 0.52 6.30 -83.57 -0.53 0.00 16 13 N -0.66 -12.34 5.26 -14.10 -0.07 -12.42 16 14 C 0.71 13.46 8.31 -86.92 -0.72 12.74 16 15 O -0.57 -13.35 14.05 5.30 0.07 -13.28 16 16 N -0.64 -8.79 3.33 -176.91 -0.59 -9.38 16 17 C 0.13 1.52 6.24 -2.61 -0.02 1.51 16 18 C -0.09 -0.72 3.38 -89.44 -0.30 -1.02 16 19 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 20 C -0.15 -1.24 5.17 -26.79 -0.14 -1.38 16 21 C 0.06 0.42 6.60 -4.09 -0.03 0.39 16 22 N -0.68 -5.03 6.77 -117.93 -0.80 -5.83 16 23 C 0.07 0.48 5.78 -6.85 -0.04 0.44 16 24 C -0.13 -0.94 2.68 -91.84 -0.25 -1.19 16 25 H 0.08 0.55 8.13 -51.93 -0.42 0.12 16 26 C 0.11 1.04 5.58 -3.50 -0.02 1.02 16 27 C -0.12 -2.86 9.90 -39.79 -0.39 -3.25 16 28 C -0.14 -3.65 8.61 -39.26 -0.34 -3.98 16 29 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 30 H 0.10 2.36 8.06 -52.48 -0.42 1.94 16 31 H 0.11 2.67 6.23 -52.48 -0.33 2.35 16 32 H 0.39 5.85 7.79 -40.82 -0.32 5.54 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.01 7.86 -51.93 -0.41 0.60 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.71 8.03 -51.93 -0.42 0.30 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.34 2.53 8.83 -39.29 -0.35 2.18 16 40 H 0.08 0.46 8.00 -51.93 -0.42 0.04 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.57 7.94 -51.93 -0.41 0.16 16 43 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 44 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.13 3.54 6.13 -52.49 -0.32 3.21 16 LS Contribution 355.96 15.07 5.36 5.36 Total: -1.00 -31.42 355.96 -11.72 -43.14 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -6.74 Total: 10.98 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -4.52 Total: -11.98 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.87 Total: -48.49 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.07 Total: -13.28 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.42 -11.72 -43.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.715 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds