Wall clock time and date at job start Tue Mar 31 2020 12:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48509 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47167 * 299.99601 * 3 2 1 6 6 H 1.48497 * 109.47483 * 59.99896 * 3 2 1 7 7 C 1.39893 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99671 * 175.56381 * 7 2 1 9 9 C 1.41158 * 120.00244 * 355.56113 * 7 2 1 10 10 C 1.40860 * 120.16433 * 214.78221 * 9 7 2 11 11 C 1.36372 * 119.82925 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.17026 * 359.97001 * 11 10 9 13 13 N 1.39243 * 119.83829 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99206 * 35.28137 * 13 12 11 15 15 O 1.21580 * 120.00444 * 355.97913 * 14 13 12 16 16 N 1.34777 * 119.99529 * 175.70789 * 14 13 12 17 17 C 1.47045 * 125.43463 * 179.71958 * 16 14 13 18 18 C 1.55141 * 105.82715 * 160.44742 * 17 16 14 19 19 H 1.09000 * 111.53489 * 150.97755 * 18 17 16 20 20 C 1.52981 * 108.56332 * 274.15728 * 18 17 16 21 21 C 1.52909 * 109.44709 * 165.06621 * 20 18 17 22 22 N 1.46497 * 108.66615 * 296.10120 * 21 20 18 23 23 C 1.44018 * 113.11866 * 60.85996 * 22 21 20 24 24 C 1.50004 * 116.07157 * 312.16849 * 23 22 21 25 25 H 1.09000 * 107.52406 * 157.97635 * 24 23 22 26 26 C 1.47093 * 125.43433 * 0.02562 * 16 14 13 27 27 C 1.39488 * 120.32903 * 0.30375 * 12 11 10 28 28 C 1.36377 * 120.16631 * 359.44094 * 27 12 11 29 29 H 0.96997 * 119.99974 * 0.02562 * 1 2 3 30 30 H 1.08003 * 120.08416 * 359.97438 * 10 9 7 31 31 H 1.08008 * 119.91719 * 180.02562 * 11 10 9 32 32 H 0.96990 * 120.00035 * 215.28183 * 13 12 11 33 33 H 1.08991 * 110.16132 * 279.66076 * 17 16 14 34 34 H 1.08997 * 110.15914 * 41.43920 * 17 16 14 35 35 H 1.09001 * 109.47508 * 285.06278 * 20 18 17 36 36 H 1.09003 * 109.47522 * 45.07485 * 20 18 17 37 37 H 1.08996 * 109.60770 * 55.85367 * 21 20 18 38 38 H 1.08999 * 109.60569 * 176.18044 * 21 20 18 39 39 H 1.00907 * 111.00070 * 296.33622 * 22 21 20 40 40 H 1.09001 * 109.08832 * 189.50381 * 23 22 21 41 41 H 1.09001 * 106.71156 * 72.98308 * 23 22 21 42 42 H 1.08998 * 109.92701 * 298.87091 * 26 16 14 43 43 H 1.09002 * 109.92776 * 59.99321 * 26 16 14 44 44 H 1.07998 * 119.91017 * 179.69753 * 27 12 11 45 45 H 1.07997 * 120.08302 * 180.25459 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.7029 1.3464 0.0006 5 1 1.8841 2.3964 -1.2125 6 1 1.8840 2.3965 1.2124 7 6 2.0083 -1.2115 0.0005 8 1 3.0859 -1.2129 -0.0718 9 6 1.3057 -2.4321 0.0957 10 6 1.8649 -3.5179 0.7976 11 6 1.1804 -4.6941 0.8848 12 6 -0.0706 -4.8235 0.2817 13 7 -0.7637 -6.0275 0.3755 14 6 -0.6813 -6.7666 1.4996 15 8 0.0549 -6.4195 2.4028 16 7 -1.4192 -7.8874 1.6247 17 6 -1.4183 -8.7829 2.7910 18 6 -2.7335 -9.6005 2.6977 19 1 -2.6267 -10.5839 3.1556 20 6 -3.8552 -8.7955 3.3565 21 6 -5.2078 -9.3879 2.9596 22 7 -5.3785 -9.2386 1.5122 23 6 -4.3678 -9.9254 0.7499 24 6 -2.9496 -9.7043 1.1855 25 1 -2.3585 -10.5425 0.8167 26 6 -2.3490 -8.4135 0.6137 27 6 -0.6283 -3.7547 -0.4198 28 6 0.0420 -2.5705 -0.5112 29 1 -0.4850 0.8400 -0.0004 30 1 2.8337 -3.4192 1.2647 31 1 1.6077 -5.5274 1.4229 32 1 -1.3057 -6.3343 -0.3680 33 1 -0.5561 -9.4485 2.7530 34 1 -1.4037 -8.2002 3.7120 35 1 -3.7442 -8.8369 4.4401 36 1 -3.8013 -7.7585 3.0251 37 1 -5.2360 -10.4449 3.2240 38 1 -6.0058 -8.8591 3.4808 39 1 -5.4115 -8.2647 1.2505 40 1 -4.4536 -9.6364 -0.2976 41 1 -4.5875 -10.9903 0.8259 42 1 -3.1401 -7.6883 0.4234 43 1 -1.8113 -8.6275 -0.3100 44 1 -1.5952 -3.8639 -0.8883 45 1 -0.3929 -1.7425 -1.0512 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580055741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:48 Heat of formation + Delta-G solvation = -22.810023 kcal Electronic energy + Delta-G solvation = -26051.957574 eV Core-core repulsion = 22453.652967 eV Total energy + Delta-G solvation = -3598.304607 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.95580 -40.60886 -39.09312 -36.83899 -36.17559 -34.76215 -33.10050 -32.43131 -31.48572 -30.58991 -28.76528 -27.06810 -25.81046 -23.69736 -23.64141 -23.02347 -22.40562 -20.95481 -20.19848 -19.41308 -19.14610 -17.93951 -17.46569 -17.04211 -16.81713 -16.30976 -16.02944 -15.68411 -15.50156 -15.20226 -14.88466 -14.76280 -14.49737 -14.19026 -14.01740 -13.73844 -13.55141 -13.48490 -13.25845 -12.93757 -12.90238 -12.81666 -12.72355 -12.50867 -12.27665 -12.16096 -11.81976 -11.41349 -11.37389 -11.28639 -11.24462 -11.02980 -10.69330 -9.73508 -9.48334 -9.31630 -8.70469 -8.50408 -6.32934 0.81849 1.12536 1.39463 1.45228 1.54592 1.58926 2.11635 2.24600 2.80175 3.01057 3.38838 3.44585 3.46890 3.67005 3.75264 4.05440 4.12553 4.29176 4.36450 4.40135 4.45535 4.50515 4.54921 4.58235 4.69385 4.80183 4.89752 4.91905 4.93921 5.02354 5.07395 5.09648 5.12725 5.19814 5.25210 5.34502 5.41431 5.44010 5.67188 5.81463 6.02644 6.10252 6.18568 6.26448 6.38240 6.46088 6.67408 6.94943 6.97316 7.00187 7.56061 8.42698 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028314 B = 0.002606 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.663028 B =10742.467252 C =11058.739671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.027 3.973 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.270 1.270 7 C -0.497 4.497 8 H 0.072 0.928 9 C 0.067 3.933 10 C -0.219 4.219 11 C -0.098 4.098 12 C 0.038 3.962 13 N -0.656 5.656 14 C 0.707 3.293 15 O -0.625 6.625 16 N -0.631 5.631 17 C 0.123 3.877 18 C -0.077 4.077 19 H 0.119 0.881 20 C -0.149 4.149 21 C 0.066 3.934 22 N -0.688 5.688 23 C 0.075 3.925 24 C -0.116 4.116 25 H 0.097 0.903 26 C 0.099 3.901 27 C -0.119 4.119 28 C -0.156 4.156 29 H 0.285 0.715 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.411 0.589 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.338 0.662 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.124 0.876 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.098 -19.852 0.515 23.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.195 1.195 7 C -0.528 4.528 8 H 0.090 0.910 9 C 0.064 3.936 10 C -0.239 4.239 11 C -0.118 4.118 12 C -0.056 4.056 13 N -0.303 5.303 14 C 0.409 3.591 15 O -0.506 6.506 16 N -0.369 5.369 17 C 0.000 4.000 18 C -0.096 4.096 19 H 0.137 0.863 20 C -0.188 4.188 21 C -0.064 4.064 22 N -0.315 5.315 23 C -0.056 4.056 24 C -0.137 4.137 25 H 0.115 0.885 26 C -0.023 4.023 27 C -0.139 4.139 28 C -0.176 4.176 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.122 0.878 32 H 0.248 0.752 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.156 0.844 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.142 0.858 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.212 -19.963 1.109 23.428 hybrid contribution 1.269 1.512 0.110 1.977 sum -10.943 -18.451 1.218 21.487 Atomic orbital electron populations 1.69832 1.08549 1.29881 1.38708 1.26740 0.95832 1.04294 0.91590 0.85049 0.79021 0.76102 0.78803 1.18468 1.18614 1.19486 1.19733 0.94806 0.91301 1.46947 0.90985 1.18026 0.93406 0.92660 0.89463 1.20920 1.01585 0.95438 1.05972 1.20494 0.93775 0.97448 1.00077 1.17117 0.93023 0.86372 1.09067 1.41874 1.51402 1.20805 1.16238 1.15725 0.80817 0.80001 0.82526 1.90879 1.44614 1.72543 1.42529 1.47427 1.44739 1.23832 1.20924 1.22235 0.98889 0.91208 0.87698 1.21971 0.92327 0.99566 0.95783 0.86297 1.22198 0.96690 0.98627 1.01314 1.21882 0.94642 1.01987 0.87855 1.59812 1.47344 1.18449 1.05929 1.20702 0.86084 1.00614 0.98214 1.21665 0.99923 0.97035 0.95091 0.88506 1.22209 0.92060 0.96372 0.91679 1.20510 0.99298 0.91951 1.02167 1.21161 0.97431 0.96289 1.02706 0.90487 0.88642 0.87848 0.75246 0.91687 0.92811 0.90817 0.94045 0.89648 0.90243 0.84437 0.89454 0.90160 0.91580 0.90135 0.85819 0.86112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.04 10.60 21.82 0.23 -44.81 16 2 C 0.03 1.41 5.42 85.23 0.46 1.87 16 3 Si 0.99 39.82 29.56 68.60 2.03 41.85 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 5 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 6 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.50 -27.88 9.02 23.39 0.21 -27.67 16 8 H 0.07 3.92 7.85 -2.91 -0.02 3.90 16 9 C 0.07 3.78 5.55 -21.28 -0.12 3.67 16 10 C -0.22 -11.86 9.74 22.48 0.22 -11.64 16 11 C -0.10 -4.97 8.61 22.13 0.19 -4.78 16 12 C 0.04 1.75 6.30 38.57 0.24 1.99 16 13 N -0.66 -23.72 5.26 -316.78 -1.67 -25.39 16 14 C 0.71 26.54 8.31 179.05 1.49 28.03 16 15 O -0.62 -29.76 14.05 -3.97 -0.06 -29.82 16 16 N -0.63 -16.63 3.33 -831.89 -2.77 -19.40 16 17 C 0.12 2.73 6.24 87.01 0.54 3.28 16 18 C -0.08 -1.05 3.38 -10.03 -0.03 -1.08 16 19 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 20 C -0.15 -2.17 5.17 30.56 0.16 -2.01 16 21 C 0.07 0.75 6.60 86.35 0.57 1.32 16 22 N -0.69 -8.19 6.77 -527.03 -3.57 -11.75 16 23 C 0.07 0.70 5.78 85.88 0.50 1.20 16 24 C -0.12 -1.32 2.68 -11.58 -0.03 -1.35 16 25 H 0.10 0.88 8.13 -2.39 -0.02 0.86 16 26 C 0.10 1.65 5.58 86.41 0.48 2.14 16 27 C -0.12 -5.48 9.90 22.14 0.22 -5.26 16 28 C -0.16 -8.30 8.61 22.48 0.19 -8.11 16 29 H 0.28 13.77 8.30 -92.71 -0.77 13.00 16 30 H 0.10 4.98 8.06 -2.91 -0.02 4.95 16 31 H 0.10 5.32 6.23 -2.91 -0.02 5.31 16 32 H 0.41 11.42 7.79 -92.72 -0.72 10.70 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.05 1.44 7.86 -2.39 -0.02 1.43 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.04 0.83 8.03 -2.39 -0.02 0.81 16 37 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.34 4.25 8.83 -89.69 -0.79 3.46 16 40 H 0.09 0.69 8.00 -2.39 -0.02 0.67 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 1.07 7.94 -2.39 -0.02 1.05 16 43 H 0.08 1.18 8.13 -2.39 -0.02 1.16 16 44 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 45 H 0.12 6.65 6.13 -2.91 -0.02 6.63 16 Total: -1.00 -70.91 355.96 -1.01 -71.92 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -0.50 Total: 35.82 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 5.29 Total: -18.42 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -7.77 Total: -101.35 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.06 Total: -29.82 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -70.91 -1.01 -71.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.109 kcal (2) G-P(sol) polarization free energy of solvation -70.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds