Wall clock time and date at job start Tue Mar 31 2020 12:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 119.99589 * 2 1 4 4 H 1.48499 * 109.46975 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46971 * 300.00102 * 3 2 1 6 6 H 1.48501 * 109.47014 * 60.00073 * 3 2 1 7 7 C 1.37867 * 120.00636 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00463 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99710 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.46812 * 299.99859 * 9 7 2 11 11 O 1.42892 * 109.47206 * 60.00192 * 9 7 2 12 12 C 1.53007 * 109.47029 * 180.02562 * 9 7 2 13 13 N 1.46898 * 109.46802 * 181.28509 * 12 9 7 14 14 C 1.46851 * 110.99591 * 183.83066 * 13 12 9 15 15 C 1.53043 * 109.51990 * 185.84155 * 14 13 12 16 16 C 1.53115 * 109.27684 * 300.81864 * 15 14 13 17 17 C 1.53115 * 109.16163 * 57.65892 * 16 15 14 18 18 H 1.08996 * 109.50716 * 62.32232 * 17 16 15 19 19 C 1.50705 * 109.50367 * 182.40295 * 17 16 15 20 20 N 1.30103 * 124.95054 * 215.01873 * 19 17 16 21 21 C 1.35788 * 109.64560 * 180.02562 * 20 19 17 22 22 C 1.39742 * 133.60004 * 180.02562 * 21 20 19 23 23 C 1.36596 * 119.88458 * 179.97438 * 22 21 20 24 24 C 1.38783 * 120.66703 * 0.02562 * 23 22 21 25 25 C 1.37849 * 120.45452 * 0.02562 * 24 23 22 26 26 C 1.38830 * 119.68830 * 359.97438 * 25 24 23 27 27 N 1.36034 * 124.94994 * 34.99969 * 19 17 16 28 28 H 0.97007 * 126.35117 * 359.97438 * 27 19 17 29 29 C 1.46844 * 111.00162 * 308.03724 * 13 12 9 30 30 H 0.97000 * 120.00641 * 0.02562 * 1 2 3 31 31 H 0.96702 * 114.00218 * 59.99813 * 11 9 7 32 32 H 1.09003 * 109.46939 * 61.28714 * 12 9 7 33 33 H 1.08991 * 109.46839 * 301.28794 * 12 9 7 34 34 H 1.08999 * 109.46401 * 65.82439 * 14 13 12 35 35 H 1.09000 * 109.46338 * 305.85502 * 14 13 12 36 36 H 1.09006 * 109.49831 * 180.88021 * 15 14 13 37 37 H 1.09000 * 109.53787 * 60.78014 * 15 14 13 38 38 H 1.09002 * 109.52633 * 297.74724 * 16 15 14 39 39 H 1.09000 * 109.52373 * 177.56061 * 16 15 14 40 40 H 1.07999 * 120.05718 * 0.20894 * 22 21 20 41 41 H 1.08003 * 119.66552 * 179.97438 * 23 22 21 42 42 H 1.08007 * 119.77078 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.15497 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.46328 * 54.15195 * 29 13 12 45 45 H 1.08995 * 109.46341 * 294.17549 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5570 0.8897 11 8 0.4292 -2.5746 -1.1670 12 6 2.2455 -3.6620 -0.0005 13 7 1.5113 -4.9339 -0.0316 14 6 2.4314 -6.0749 0.0591 15 6 1.6495 -7.3780 -0.1222 16 6 0.5745 -7.4777 0.9635 17 6 -0.3412 -6.2535 0.8781 18 1 -0.8459 -6.2432 -0.0879 19 6 -1.3666 -6.3142 1.9809 20 7 -2.5956 -5.8997 1.8794 21 6 -3.2439 -6.1013 3.0554 22 6 -4.5468 -5.8489 3.4932 23 6 -4.9108 -6.1730 4.7693 24 6 -3.9984 -6.7519 5.6402 25 6 -2.7076 -7.0091 5.2304 26 6 -2.3196 -6.6865 3.9371 27 7 -1.1420 -6.8107 3.2273 28 1 -0.3085 -7.1817 3.5569 29 6 0.4984 -4.9830 1.0304 30 1 -0.4851 0.8400 -0.0004 31 1 0.9210 -2.5290 -1.9983 32 1 2.8569 -3.6172 0.9008 33 1 2.8872 -3.5912 -0.8787 34 1 2.9152 -6.0746 1.0358 35 1 3.1883 -5.9940 -0.7211 36 1 2.3302 -8.2253 -0.0393 37 1 1.1767 -7.3858 -1.1043 38 1 1.0491 -7.5099 1.9443 39 1 -0.0131 -8.3832 0.8123 40 1 -5.2657 -5.4018 2.8226 41 1 -5.9185 -5.9759 5.1041 42 1 -4.3017 -7.0020 6.6462 43 1 -2.0015 -7.4594 5.9124 44 1 -0.1488 -4.1091 0.9558 45 1 0.9913 -4.9878 2.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646308879.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:21 Heat of formation + Delta-G solvation = -6.370320 kcal Electronic energy + Delta-G solvation = -26311.005227 eV Core-core repulsion = 22713.413499 eV Total energy + Delta-G solvation = -3597.591728 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.22484 -40.26099 -38.33236 -37.43508 -34.57216 -34.21692 -34.15598 -32.54973 -30.93481 -30.02824 -29.58667 -26.97694 -25.28756 -24.65601 -23.40295 -22.89445 -21.97715 -21.72961 -20.63493 -19.19550 -18.83764 -18.03878 -16.92358 -16.73090 -16.66459 -16.24108 -16.12182 -15.91642 -15.63255 -15.28663 -15.07395 -14.89985 -14.76042 -14.62208 -14.06830 -14.01790 -13.32356 -13.13572 -12.91947 -12.90637 -12.81872 -12.69053 -12.53598 -12.46799 -12.30620 -12.04741 -11.79539 -11.76084 -11.59411 -11.43517 -10.97713 -10.90348 -10.67909 -10.06608 -9.35421 -9.18379 -9.11869 -8.14226 -6.41289 -0.03478 0.55280 1.37990 1.38818 1.51369 1.71351 1.87797 2.36796 2.82554 2.91717 3.11725 3.22981 3.57454 3.74419 3.82807 3.97879 4.13590 4.17027 4.21157 4.27002 4.30737 4.38053 4.46291 4.47108 4.50620 4.54334 4.61157 4.71385 4.73670 4.85102 4.97124 4.98417 5.03819 5.06599 5.13419 5.19091 5.39954 5.43161 5.55509 5.57536 5.58925 5.73794 5.96957 5.97259 6.17016 6.30730 6.39601 6.72864 6.89698 7.33762 7.62513 8.90299 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.003729 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.164848 B = 7507.512116 C = 9164.003694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.961 3.039 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.281 1.281 7 C -0.588 4.588 8 H 0.062 0.938 9 C 0.233 3.767 10 H 0.014 0.986 11 O -0.570 6.570 12 C 0.049 3.951 13 N -0.533 5.533 14 C 0.046 3.954 15 C -0.105 4.105 16 C -0.108 4.108 17 C 0.002 3.998 18 H 0.095 0.905 19 C 0.295 3.705 20 N -0.537 5.537 21 C 0.005 3.995 22 C -0.093 4.093 23 C -0.122 4.122 24 C -0.099 4.099 25 C -0.113 4.113 26 C 0.032 3.968 27 N -0.583 5.583 28 H 0.435 0.565 29 C 0.078 3.922 30 H 0.260 0.740 31 H 0.354 0.646 32 H 0.025 0.975 33 H 0.077 0.923 34 H 0.034 0.966 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.124 0.876 41 H 0.158 0.842 42 H 0.168 0.832 43 H 0.153 0.847 44 H 0.045 0.955 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 -20.025 9.895 22.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.786 3.214 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.207 1.207 7 C -0.626 4.626 8 H 0.080 0.920 9 C 0.175 3.825 10 H 0.032 0.968 11 O -0.373 6.373 12 C -0.079 4.079 13 N -0.257 5.257 14 C -0.081 4.081 15 C -0.143 4.143 16 C -0.146 4.146 17 C -0.019 4.019 18 H 0.114 0.886 19 C 0.027 3.973 20 N -0.257 5.257 21 C -0.113 4.113 22 C -0.113 4.113 23 C -0.142 4.142 24 C -0.118 4.118 25 C -0.134 4.134 26 C -0.078 4.078 27 N -0.196 5.196 28 H 0.277 0.723 29 C -0.051 4.051 30 H 0.069 0.931 31 H 0.198 0.802 32 H 0.043 0.957 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.102 0.898 36 H 0.121 0.879 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.142 0.858 41 H 0.176 0.824 42 H 0.186 0.814 43 H 0.170 0.830 44 H 0.064 0.936 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.720 -19.639 9.190 21.751 hybrid contribution 1.669 1.204 0.928 2.258 sum -0.051 -18.434 10.118 21.029 Atomic orbital electron populations 1.70256 1.07843 1.27250 1.48487 1.25939 0.95415 1.03091 0.93386 0.85490 0.79243 0.79051 0.77659 1.18353 1.20397 1.20707 1.22103 0.93607 0.92755 1.54170 0.91993 1.19229 0.87713 0.90521 0.85040 0.96779 1.86522 1.38603 1.96445 1.15715 1.22671 0.96032 0.89244 0.99925 1.61814 1.15183 1.02641 1.46091 1.22310 0.94709 0.90491 1.00610 1.21545 0.97258 0.96480 0.98975 1.21670 0.96680 0.95559 1.00652 1.19785 0.91613 0.96606 0.93861 0.88644 1.23582 0.93067 0.94168 0.86474 1.70406 1.05609 1.24272 1.25433 1.19641 0.96634 1.04383 0.90601 1.20320 0.92582 1.00751 0.97633 1.21038 1.01626 0.99446 0.92085 1.21378 0.91660 0.97723 1.01056 1.20393 0.98314 1.03337 0.91352 1.19261 0.87156 1.05147 0.96246 1.42913 1.12540 1.53213 1.10913 0.72341 1.21824 0.94233 0.96927 0.92149 0.93100 0.80211 0.95675 0.90436 0.94775 0.89842 0.87908 0.91155 0.90670 0.89576 0.85842 0.82421 0.81440 0.82973 0.93597 0.95743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.19 12.84 21.44 0.28 -55.92 16 2 C 0.02 1.38 5.40 84.65 0.46 1.83 16 3 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.59 -32.99 8.76 25.60 0.22 -32.76 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.23 12.29 2.24 29.85 0.07 12.36 16 10 H 0.01 0.87 6.27 -2.39 -0.01 0.86 16 11 O -0.57 -31.23 12.57 -148.98 -1.87 -33.10 16 12 C 0.05 2.02 4.73 86.31 0.41 2.43 16 13 N -0.53 -18.72 4.61 -896.34 -4.13 -22.85 16 14 C 0.05 1.15 5.46 86.33 0.47 1.62 16 15 C -0.11 -1.99 6.09 30.65 0.19 -1.80 16 16 C -0.11 -2.11 5.06 30.67 0.16 -1.96 16 17 C 0.00 0.06 2.82 -11.49 -0.03 0.03 16 18 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 19 C 0.30 9.54 6.82 137.93 0.94 10.48 16 20 N -0.54 -20.97 11.27 -179.96 -2.03 -23.00 16 21 C 0.01 0.18 7.23 39.45 0.29 0.46 16 22 C -0.09 -2.65 10.05 22.25 0.22 -2.42 16 23 C -0.12 -2.44 9.96 22.02 0.22 -2.22 16 24 C -0.10 -1.66 10.03 22.31 0.22 -1.44 16 25 C -0.11 -2.22 10.07 22.32 0.22 -2.00 16 26 C 0.03 0.88 7.31 38.86 0.28 1.16 16 27 N -0.58 -14.75 5.97 -179.23 -1.07 -15.82 16 28 H 0.43 7.59 8.03 -92.70 -0.74 6.84 16 29 C 0.08 2.87 4.30 86.33 0.37 3.25 16 30 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 31 H 0.35 17.24 9.04 -74.06 -0.67 16.57 16 32 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 34 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 1.94 8.12 -2.39 -0.02 1.92 16 36 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 38 H 0.07 1.20 7.26 -2.39 -0.02 1.18 16 39 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 41 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 43 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.05 2.21 5.87 -2.39 -0.01 2.20 16 45 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -78.12 362.45 -2.49 -80.61 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: -0.40 Total: 34.77 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 4.71 Total: -10.99 kcal Atomic # 7 Polarization: -110.64 SS G_CDS: -6.95 Total: -117.59 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -1.87 Total: -33.10 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -78.12 -2.49 -80.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646308879.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.236 kcal (2) G-P(sol) polarization free energy of solvation -78.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds