Wall clock time and date at job start Tue Mar 31 2020 11:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00575 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72205 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72053 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72089 * 3 2 1 7 7 C 1.38817 * 119.99464 * 179.72036 * 2 1 3 8 8 H 1.08001 * 120.00353 * 0.28242 * 7 2 1 9 9 N 1.36936 * 119.99709 * 180.27733 * 7 2 1 10 10 C 1.46507 * 119.99957 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.46820 * 34.99794 * 10 9 7 12 12 C 1.53002 * 109.47099 * 154.99986 * 10 9 7 13 13 N 1.46498 * 109.46819 * 304.99896 * 12 10 9 14 14 C 1.34781 * 119.99774 * 180.02562 * 13 12 10 15 15 O 1.21286 * 119.99822 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00369 * 180.02562 * 14 13 12 17 17 H 1.08996 * 110.72939 * 298.04559 * 16 14 13 18 18 C 1.54367 * 110.82632 * 174.41939 * 16 14 13 19 19 C 1.51219 * 105.12387 * 215.48579 * 18 16 14 20 20 C 1.38738 * 130.69733 * 197.09823 * 19 18 16 21 21 C 1.38580 * 118.55839 * 179.97438 * 20 19 18 22 22 C 1.38226 * 118.98900 * 359.97438 * 21 20 19 23 23 N 1.31691 * 120.80339 * 0.02562 * 22 21 20 24 24 C 1.32291 * 122.02908 * 359.97438 * 23 22 21 25 25 C 1.51479 * 130.14162 * 179.97438 * 24 23 22 26 26 C 1.52999 * 109.47115 * 275.00038 * 10 9 7 27 27 C 1.53005 * 117.49744 * 128.74263 * 26 10 9 28 28 C 1.53005 * 117.49761 * 60.08710 * 26 10 9 29 29 H 0.97004 * 119.99499 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00448 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.46809 * 65.00075 * 12 10 9 32 32 H 1.09002 * 109.46994 * 185.00417 * 12 10 9 33 33 H 0.96991 * 120.00737 * 0.02562 * 13 12 10 34 34 H 1.09009 * 110.31121 * 334.40014 * 18 16 14 35 35 H 1.09004 * 110.31051 * 96.57088 * 18 16 14 36 36 H 1.08000 * 120.72041 * 0.02562 * 20 19 18 37 37 H 1.07997 * 120.50511 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.60101 * 180.02562 * 22 21 20 39 39 H 1.08993 * 110.29645 * 43.86699 * 25 24 23 40 40 H 1.09006 * 110.37376 * 281.78367 * 25 24 23 41 41 H 1.08997 * 115.55354 * 274.41473 * 26 10 9 42 42 H 1.08999 * 117.49542 * 0.02562 * 27 26 10 43 43 H 1.09000 * 117.49147 * 145.01854 * 27 26 10 44 44 H 1.09002 * 117.49548 * 214.97688 * 28 26 10 45 45 H 1.09005 * 117.49840 * 359.97415 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.5037 2.0428 -1.4001 5 1 1.4449 2.6543 0.6941 6 1 3.5449 1.4418 0.7059 7 6 2.0101 -1.2022 0.0059 8 1 1.4701 -2.1376 0.0058 9 7 3.3795 -1.2023 0.0116 10 6 4.1120 -2.4711 0.0172 11 1 3.5670 -3.2078 -0.5730 12 6 5.5017 -2.2604 -0.5870 13 7 5.3697 -1.6680 -1.9204 14 6 6.4707 -1.3923 -2.6473 15 8 7.5707 -1.6342 -2.1973 16 6 6.3351 -0.7824 -4.0186 17 1 5.7900 -1.4501 -4.6856 18 6 7.7201 -0.4284 -4.6012 19 6 7.5032 0.8442 -5.3889 20 6 8.2833 1.4486 -6.3640 21 6 7.8367 2.6319 -6.9304 22 6 6.6345 3.1658 -6.5060 23 7 5.9198 2.5645 -5.5777 24 6 6.3116 1.4341 -5.0129 25 6 5.6453 0.5952 -3.9420 26 6 4.2520 -2.9727 1.4558 27 6 3.8267 -4.4135 1.7462 28 6 2.9652 -3.2472 2.2367 29 1 -0.4849 0.8401 -0.0004 30 1 3.8646 -0.3623 0.0112 31 1 6.0782 -1.5918 0.0523 32 1 6.0134 -3.2197 -0.6647 33 1 4.4901 -1.4741 -2.2801 34 1 8.4365 -0.2585 -3.7974 35 1 8.0691 -1.2252 -5.2581 36 1 9.2180 1.0061 -6.6755 37 1 8.4188 3.1288 -7.6924 38 1 6.2768 4.0873 -6.9411 39 1 4.5793 0.4973 -4.1472 40 1 5.8011 1.0406 -2.9594 41 1 5.1029 -2.5776 2.0108 42 1 3.4476 -5.0041 0.9121 43 1 4.3977 -4.9661 2.4923 44 1 2.9697 -3.0331 3.3055 45 1 2.0188 -3.0700 1.7256 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690177607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:14 Heat of formation + Delta-G solvation = 34.220512 kcal Electronic energy + Delta-G solvation = -25933.710111 eV Core-core repulsion = 22337.878534 eV Total energy + Delta-G solvation = -3595.831578 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.05928 -39.53041 -37.73439 -36.04432 -34.80553 -33.49804 -32.81274 -31.31222 -29.97443 -28.37022 -27.90153 -24.77458 -23.31305 -22.33507 -22.01453 -21.74104 -21.41077 -20.17682 -19.51356 -17.86990 -17.10801 -16.82009 -16.51216 -15.85510 -15.41225 -15.16633 -15.00502 -14.63102 -14.34291 -13.89465 -13.86672 -13.45522 -13.34689 -13.06610 -13.00400 -12.80485 -12.61134 -12.34161 -11.90985 -11.59209 -11.53030 -11.46058 -11.31054 -10.94638 -10.90238 -10.75289 -10.28404 -9.94029 -9.82631 -9.73826 -9.52352 -9.44190 -9.40304 -9.03114 -8.88503 -8.82643 -7.38397 -5.84098 -3.20682 0.90845 1.10160 2.68861 3.29031 3.34847 3.37448 3.44198 3.58897 3.76788 4.26775 4.38151 4.47252 4.53189 4.68823 4.72249 4.80401 4.97092 5.04871 5.07637 5.18823 5.30426 5.38127 5.40994 5.52477 5.54640 5.60068 5.63469 5.66055 5.72802 5.80706 5.88741 5.91044 5.94928 5.98980 6.04738 6.11202 6.16688 6.44488 6.51584 6.54123 6.70286 6.72829 6.97357 7.72078 7.84969 7.89767 8.33477 8.35226 9.11206 9.83885 10.02830 11.33492 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.003867 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.075071 B = 7239.142495 C = 8997.349899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.011 3.989 3 Si 0.876 3.124 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.244 4.244 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.199 3.801 11 H 0.064 0.936 12 C 0.115 3.885 13 N -0.713 5.713 14 C 0.521 3.479 15 O -0.548 6.548 16 C -0.109 4.109 17 H 0.113 0.887 18 C -0.061 4.061 19 C -0.146 4.146 20 C -0.065 4.065 21 C -0.177 4.177 22 C 0.101 3.899 23 N -0.477 5.477 24 C 0.125 3.875 25 C -0.066 4.066 26 C -0.164 4.164 27 C -0.193 4.193 28 C -0.154 4.154 29 H 0.260 0.740 30 H 0.362 0.638 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.412 0.588 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.157 0.843 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.429 -1.101 -11.014 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.185 4.185 3 Si 0.707 3.293 4 H -0.207 1.207 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.089 3.911 11 H 0.082 0.918 12 C -0.009 4.009 13 N -0.365 5.365 14 C 0.307 3.693 15 O -0.426 6.426 16 C -0.131 4.131 17 H 0.131 0.869 18 C -0.099 4.099 19 C -0.148 4.148 20 C -0.091 4.091 21 C -0.196 4.196 22 C -0.057 4.057 23 N -0.185 5.185 24 C -0.012 4.012 25 C -0.104 4.104 26 C -0.186 4.186 27 C -0.231 4.231 28 C -0.191 4.191 29 H 0.070 0.930 30 H 0.195 0.805 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.248 0.752 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.174 0.826 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.138 -0.948 -10.433 18.409 hybrid contribution 0.901 1.157 -0.292 1.495 sum 16.039 0.209 -10.724 19.295 Atomic orbital electron populations 1.69687 1.05100 1.25907 1.57000 1.24628 0.95108 0.97018 1.01771 0.86687 0.79303 0.85292 0.78050 1.20734 1.21840 1.20405 1.18992 0.80296 0.94526 1.43512 0.89008 1.42837 1.04117 1.01665 1.89825 1.20021 0.89722 0.89723 0.91668 0.91784 1.21675 0.98408 0.98198 0.82667 1.46023 1.09550 1.62946 1.17938 1.20150 0.84523 0.78266 0.86388 1.90675 1.26106 1.53767 1.72036 1.21968 0.98325 0.97256 0.95503 0.86921 1.20828 0.96682 0.93528 0.98837 1.21501 0.96616 0.98921 0.97791 1.21048 0.99141 0.94619 0.94268 1.22063 0.98430 0.97094 1.02058 1.22655 0.91225 0.98847 0.92928 1.66870 1.34408 1.08680 1.08583 1.21758 0.93045 0.91206 0.95234 1.20953 1.00905 0.91343 0.97191 1.22952 0.99078 0.97097 0.99449 1.22954 1.05467 0.91301 1.03395 1.22852 0.96753 1.00366 0.99170 0.92989 0.80493 0.91779 0.91125 0.75198 0.88017 0.89828 0.84955 0.84602 0.82595 0.88258 0.88609 0.89184 0.89399 0.90059 0.90217 0.87083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.70 13.97 55.49 0.78 -26.92 16 2 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 3 Si 0.88 21.18 27.74 -169.99 -4.71 16.47 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 6 H -0.28 -6.45 6.52 56.52 0.37 -6.08 16 7 C -0.24 -6.14 9.11 -15.06 -0.14 -6.28 16 8 H 0.09 2.49 7.14 -52.49 -0.37 2.12 16 9 N -0.74 -15.46 4.34 -53.42 -0.23 -15.70 16 10 C 0.20 3.38 2.70 -67.93 -0.18 3.20 16 11 H 0.06 1.12 7.84 -51.93 -0.41 0.71 16 12 C 0.11 1.74 5.22 -4.04 -0.02 1.72 16 13 N -0.71 -10.25 5.33 -60.29 -0.32 -10.58 16 14 C 0.52 7.39 7.06 -10.98 -0.08 7.31 16 15 O -0.55 -9.30 15.56 5.55 0.09 -9.21 16 16 C -0.11 -1.25 3.46 -90.40 -0.31 -1.56 16 17 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 18 C -0.06 -0.67 6.06 -26.91 -0.16 -0.83 16 19 C -0.15 -1.68 6.16 -104.20 -0.64 -2.32 16 20 C -0.06 -0.62 10.17 -39.27 -0.40 -1.02 16 21 C -0.18 -1.58 10.12 -39.46 -0.40 -1.97 16 22 C 0.10 1.09 11.18 -17.62 -0.20 0.89 16 23 N -0.48 -6.73 10.35 -9.19 -0.10 -6.82 16 24 C 0.13 1.68 7.32 -82.03 -0.60 1.08 16 25 C -0.07 -0.84 6.26 -26.84 -0.17 -1.01 16 26 C -0.16 -2.68 5.36 -90.62 -0.49 -3.17 16 27 C -0.19 -2.82 10.18 -26.69 -0.27 -3.09 16 28 C -0.15 -2.68 9.78 -26.69 -0.26 -2.94 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.36 7.71 5.66 -40.82 -0.23 7.48 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.41 5.90 8.13 -40.82 -0.33 5.57 16 34 H 0.10 1.25 7.07 -51.92 -0.37 0.88 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.10 1.33 7.88 -51.93 -0.41 0.92 16 41 H 0.09 1.42 8.11 -51.93 -0.42 0.99 16 42 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.11 2.26 6.23 -51.93 -0.32 1.93 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -31.52 369.26 -10.03 -41.55 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -6.68 Total: 15.44 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -4.41 Total: -9.80 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: 0.13 Total: -60.01 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.71 Total: 16.47 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.52 -10.03 -41.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690177607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.773 kcal (2) G-P(sol) polarization free energy of solvation -31.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds