Wall clock time and date at job start Tue Mar 31 2020 11:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00575 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72205 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72053 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72089 * 3 2 1 7 7 C 1.38817 * 119.99464 * 179.72036 * 2 1 3 8 8 H 1.08001 * 120.00353 * 0.28242 * 7 2 1 9 9 N 1.36936 * 119.99709 * 180.27733 * 7 2 1 10 10 C 1.46507 * 119.99957 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.46820 * 34.99794 * 10 9 7 12 12 C 1.53002 * 109.47099 * 154.99986 * 10 9 7 13 13 N 1.46498 * 109.46819 * 304.99896 * 12 10 9 14 14 C 1.34781 * 119.99774 * 180.02562 * 13 12 10 15 15 O 1.21286 * 119.99822 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00369 * 180.02562 * 14 13 12 17 17 H 1.08996 * 110.72939 * 298.04559 * 16 14 13 18 18 C 1.54367 * 110.82632 * 174.41939 * 16 14 13 19 19 C 1.51219 * 105.12387 * 215.48579 * 18 16 14 20 20 C 1.38738 * 130.69733 * 197.09823 * 19 18 16 21 21 C 1.38580 * 118.55839 * 179.97438 * 20 19 18 22 22 C 1.38226 * 118.98900 * 359.97438 * 21 20 19 23 23 N 1.31691 * 120.80339 * 0.02562 * 22 21 20 24 24 C 1.32291 * 122.02908 * 359.97438 * 23 22 21 25 25 C 1.51479 * 130.14162 * 179.97438 * 24 23 22 26 26 C 1.52999 * 109.47115 * 275.00038 * 10 9 7 27 27 C 1.53005 * 117.49744 * 128.74263 * 26 10 9 28 28 C 1.53005 * 117.49761 * 60.08710 * 26 10 9 29 29 H 0.97004 * 119.99499 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00448 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.46809 * 65.00075 * 12 10 9 32 32 H 1.09002 * 109.46994 * 185.00417 * 12 10 9 33 33 H 0.96991 * 120.00737 * 0.02562 * 13 12 10 34 34 H 1.09009 * 110.31121 * 334.40014 * 18 16 14 35 35 H 1.09004 * 110.31051 * 96.57088 * 18 16 14 36 36 H 1.08000 * 120.72041 * 0.02562 * 20 19 18 37 37 H 1.07997 * 120.50511 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.60101 * 180.02562 * 22 21 20 39 39 H 1.08993 * 110.29645 * 43.86699 * 25 24 23 40 40 H 1.09006 * 110.37376 * 281.78367 * 25 24 23 41 41 H 1.08997 * 115.55354 * 274.41473 * 26 10 9 42 42 H 1.08999 * 117.49542 * 0.02562 * 27 26 10 43 43 H 1.09000 * 117.49147 * 145.01854 * 27 26 10 44 44 H 1.09002 * 117.49548 * 214.97688 * 28 26 10 45 45 H 1.09005 * 117.49840 * 359.97415 * 28 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.5037 2.0428 -1.4001 5 1 1.4449 2.6543 0.6941 6 1 3.5449 1.4418 0.7059 7 6 2.0101 -1.2022 0.0059 8 1 1.4701 -2.1376 0.0058 9 7 3.3795 -1.2023 0.0116 10 6 4.1120 -2.4711 0.0172 11 1 3.5670 -3.2078 -0.5730 12 6 5.5017 -2.2604 -0.5870 13 7 5.3697 -1.6680 -1.9204 14 6 6.4707 -1.3923 -2.6473 15 8 7.5707 -1.6342 -2.1973 16 6 6.3351 -0.7824 -4.0186 17 1 5.7900 -1.4501 -4.6856 18 6 7.7201 -0.4284 -4.6012 19 6 7.5032 0.8442 -5.3889 20 6 8.2833 1.4486 -6.3640 21 6 7.8367 2.6319 -6.9304 22 6 6.6345 3.1658 -6.5060 23 7 5.9198 2.5645 -5.5777 24 6 6.3116 1.4341 -5.0129 25 6 5.6453 0.5952 -3.9420 26 6 4.2520 -2.9727 1.4558 27 6 3.8267 -4.4135 1.7462 28 6 2.9652 -3.2472 2.2367 29 1 -0.4849 0.8401 -0.0004 30 1 3.8646 -0.3623 0.0112 31 1 6.0782 -1.5918 0.0523 32 1 6.0134 -3.2197 -0.6647 33 1 4.4901 -1.4741 -2.2801 34 1 8.4365 -0.2585 -3.7974 35 1 8.0691 -1.2252 -5.2581 36 1 9.2180 1.0061 -6.6755 37 1 8.4188 3.1288 -7.6924 38 1 6.2768 4.0873 -6.9411 39 1 4.5793 0.4973 -4.1472 40 1 5.8011 1.0406 -2.9594 41 1 5.1029 -2.5776 2.0108 42 1 3.4476 -5.0041 0.9121 43 1 4.3977 -4.9661 2.4923 44 1 2.9697 -3.0331 3.3055 45 1 2.0188 -3.0700 1.7256 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690177607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:13 Heat of formation + Delta-G solvation = 14.177680 kcal Electronic energy + Delta-G solvation = -25934.579234 eV Core-core repulsion = 22337.878534 eV Total energy + Delta-G solvation = -3596.700700 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.95527 -40.63570 -39.12196 -36.98516 -36.14537 -35.19699 -33.63492 -33.09260 -31.05257 -29.71053 -28.82132 -25.95565 -24.84717 -23.67354 -23.03093 -22.83852 -22.44573 -21.49425 -20.78769 -19.60010 -18.32819 -17.70420 -17.34575 -16.97752 -16.96402 -16.33627 -16.06202 -15.86005 -15.76005 -15.34578 -15.05667 -14.64945 -14.51344 -14.38119 -14.04371 -13.99118 -13.78655 -13.50564 -13.12099 -12.99421 -12.77609 -12.66349 -12.43921 -12.36457 -12.31553 -12.26276 -12.08431 -11.65325 -11.09754 -11.00614 -10.89979 -10.76016 -10.70154 -10.28533 -10.05371 -9.70607 -9.30760 -7.96748 -5.28449 0.10203 0.32382 1.39477 1.40176 1.46420 1.56077 2.17766 2.50378 2.76735 2.91672 3.00523 3.35189 3.40748 3.62485 3.66322 3.80840 3.84908 3.91628 4.05576 4.14506 4.16976 4.22790 4.35131 4.36390 4.38631 4.54759 4.56821 4.63763 4.65383 4.76180 4.79794 4.82840 4.91830 4.95767 5.03691 5.12828 5.18416 5.20130 5.26972 5.41028 5.47489 5.52656 5.76540 5.86131 6.25803 6.54780 7.02243 7.12233 7.19387 7.86988 8.05356 9.24411 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.003867 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.075071 B = 7239.142495 C = 8997.349899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.053 4.053 3 Si 0.934 3.066 4 H -0.278 1.278 5 H -0.307 1.307 6 H -0.261 1.261 7 C -0.204 4.204 8 H 0.067 0.933 9 N -0.742 5.742 10 C 0.200 3.800 11 H 0.061 0.939 12 C 0.124 3.876 13 N -0.714 5.714 14 C 0.525 3.475 15 O -0.574 6.574 16 C -0.099 4.099 17 H 0.136 0.864 18 C -0.054 4.054 19 C -0.152 4.152 20 C -0.066 4.066 21 C -0.164 4.164 22 C 0.085 3.915 23 N -0.518 5.518 24 C 0.093 3.907 25 C -0.065 4.065 26 C -0.170 4.170 27 C -0.161 4.161 28 C -0.178 4.178 29 H 0.254 0.746 30 H 0.362 0.638 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.412 0.588 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.164 0.836 37 H 0.174 0.826 38 H 0.178 0.822 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.598 -1.652 -12.365 22.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.245 4.245 3 Si 0.764 3.236 4 H -0.204 1.204 5 H -0.235 1.235 6 H -0.187 1.187 7 C -0.335 4.335 8 H 0.085 0.915 9 N -0.384 5.384 10 C 0.091 3.909 11 H 0.079 0.921 12 C 0.000 4.000 13 N -0.365 5.365 14 C 0.312 3.688 15 O -0.454 6.454 16 C -0.121 4.121 17 H 0.154 0.846 18 C -0.092 4.092 19 C -0.154 4.154 20 C -0.092 4.092 21 C -0.183 4.183 22 C -0.072 4.072 23 N -0.227 5.227 24 C -0.043 4.043 25 C -0.103 4.103 26 C -0.191 4.191 27 C -0.198 4.198 28 C -0.216 4.216 29 H 0.063 0.937 30 H 0.196 0.804 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.248 0.752 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.181 0.819 37 H 0.191 0.809 38 H 0.195 0.805 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.121 0.879 42 H 0.112 0.888 43 H 0.127 0.873 44 H 0.105 0.895 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 18.365 -1.534 -11.782 21.874 hybrid contribution -0.035 1.253 0.093 1.257 sum 18.331 -0.281 -11.689 21.742 Atomic orbital electron populations 1.69841 1.06853 1.26090 1.60468 1.25212 0.95642 1.00079 1.03568 0.85730 0.78456 0.81394 0.78023 1.20404 1.23468 1.18657 1.18919 0.82052 0.93115 1.39422 0.91489 1.42817 1.02602 1.03342 1.89664 1.20152 0.90381 0.87780 0.92544 0.92107 1.21543 0.96701 0.98949 0.82806 1.46043 1.09761 1.62933 1.17768 1.20511 0.83796 0.77513 0.87016 1.90662 1.26976 1.54953 1.72809 1.21951 0.99181 0.96689 0.94246 0.84642 1.20776 0.95667 0.94120 0.98644 1.21621 0.96307 0.99006 0.98424 1.21490 0.99851 0.94618 0.93230 1.22476 0.97578 0.96501 1.01778 1.23172 0.91983 0.99583 0.92426 1.66812 1.36175 1.09543 1.10176 1.21816 0.94386 0.91909 0.96238 1.20882 1.00807 0.92120 0.96511 1.22908 0.98728 0.99060 0.98389 1.23024 1.03094 0.90213 1.03485 1.22728 0.95654 1.03820 0.99373 0.93729 0.80446 0.92255 0.89519 0.75179 0.89468 0.87673 0.81890 0.80879 0.80460 0.88875 0.90449 0.87925 0.88824 0.87280 0.89529 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.66 13.97 21.65 0.30 -60.35 16 2 C -0.05 -2.99 5.50 84.86 0.47 -2.52 16 3 Si 0.93 44.72 27.74 68.60 1.90 46.62 16 4 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 5 H -0.31 -15.41 7.11 99.48 0.71 -14.71 16 6 H -0.26 -11.60 6.52 99.48 0.65 -10.95 16 7 C -0.20 -10.48 9.11 84.03 0.77 -9.71 16 8 H 0.07 3.77 7.14 -2.91 -0.02 3.75 16 9 N -0.74 -30.62 4.34 -322.92 -1.40 -32.02 16 10 C 0.20 6.56 2.70 44.99 0.12 6.68 16 11 H 0.06 2.07 7.84 -2.39 -0.02 2.05 16 12 C 0.12 3.54 5.22 86.38 0.45 3.99 16 13 N -0.71 -19.71 5.33 -463.05 -2.47 -22.18 16 14 C 0.52 14.25 7.06 87.66 0.62 14.87 16 15 O -0.57 -18.73 15.56 -3.05 -0.05 -18.77 16 16 C -0.10 -2.17 3.46 -10.65 -0.04 -2.20 16 17 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 18 C -0.05 -1.09 6.06 30.48 0.18 -0.91 16 19 C -0.15 -3.23 6.16 -19.59 -0.12 -3.35 16 20 C -0.07 -1.06 10.17 22.47 0.23 -0.83 16 21 C -0.16 -2.40 10.12 22.35 0.23 -2.17 16 22 C 0.09 1.70 11.18 84.71 0.95 2.65 16 23 N -0.52 -14.43 10.35 -182.97 -1.89 -16.33 16 24 C 0.09 2.47 7.32 42.72 0.31 2.78 16 25 C -0.06 -1.67 6.26 30.52 0.19 -1.48 16 26 C -0.17 -5.24 5.36 -10.79 -0.06 -5.29 16 27 C -0.16 -4.27 10.18 30.62 0.31 -3.96 16 28 C -0.18 -6.10 9.78 30.62 0.30 -5.80 16 29 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.36 15.10 5.66 -92.71 -0.52 14.57 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.41 11.50 8.13 -92.71 -0.75 10.74 16 34 H 0.09 2.03 7.07 -2.38 -0.02 2.02 16 35 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.08 2.21 7.88 -2.38 -0.02 2.19 16 41 H 0.10 2.96 8.11 -2.39 -0.02 2.94 16 42 H 0.09 2.41 8.05 -2.39 -0.02 2.39 16 43 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 45 H 0.07 3.09 6.23 -2.38 -0.01 3.08 16 Total: -1.00 -70.47 369.26 0.98 -69.49 By element: Atomic # 1 Polarization: 41.11 SS G_CDS: -0.32 Total: 40.79 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 4.91 Total: -7.25 kcal Atomic # 7 Polarization: -125.42 SS G_CDS: -5.46 Total: -130.88 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.05 Total: -18.77 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.90 Total: 46.62 kcal Total: -70.47 0.98 -69.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690177607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.667 kcal (2) G-P(sol) polarization free energy of solvation -70.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds