Wall clock time and date at job start Tue Mar 31 2020 11:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00115 * 2 1 4 4 H 1.48496 * 109.47015 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46893 * 299.99963 * 3 2 1 6 6 H 1.48505 * 109.47184 * 59.99957 * 3 2 1 7 7 C 1.38810 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00294 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99864 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99899 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46925 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.47216 * 295.00133 * 11 10 9 13 13 N 1.46498 * 109.47065 * 55.00022 * 11 10 9 14 14 C 1.34777 * 119.99828 * 204.72115 * 13 11 10 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 11 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 11 17 17 H 1.09003 * 110.72451 * 300.70564 * 16 14 13 18 18 C 1.54364 * 110.82559 * 177.29585 * 16 14 13 19 19 C 1.51530 * 104.97081 * 215.62640 * 18 16 14 20 20 C 1.38742 * 130.61554 * 197.05458 * 19 18 16 21 21 C 1.38577 * 118.55875 * 179.78840 * 20 19 18 22 22 C 1.38225 * 118.99023 * 359.97438 * 21 20 19 23 23 N 1.31688 * 120.80225 * 0.02562 * 22 21 20 24 24 C 1.32300 * 122.03225 * 0.02562 * 23 22 21 25 25 C 1.51479 * 130.14428 * 179.97438 * 24 23 22 26 26 C 1.52999 * 109.47083 * 175.00128 * 11 10 9 27 27 C 1.52994 * 117.49964 * 248.74503 * 26 11 10 28 28 C 1.52995 * 117.50099 * 180.08622 * 26 11 10 29 29 H 0.97004 * 119.99658 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00041 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.46993 * 60.00872 * 10 9 7 32 32 H 1.08999 * 109.47017 * 300.00292 * 10 9 7 33 33 H 0.97001 * 120.00384 * 25.00562 * 13 11 10 34 34 H 1.09006 * 110.31214 * 334.39312 * 18 16 14 35 35 H 1.08997 * 110.31087 * 96.57076 * 18 16 14 36 36 H 1.07997 * 120.71527 * 359.76228 * 20 19 18 37 37 H 1.07996 * 120.50096 * 179.97438 * 21 20 19 38 38 H 1.07996 * 119.59841 * 180.02562 * 22 21 20 39 39 H 1.08991 * 110.29664 * 43.87795 * 25 24 23 40 40 H 1.08997 * 110.37162 * 281.78515 * 25 24 23 41 41 H 1.09000 * 115.55153 * 34.41700 * 26 11 10 42 42 H 1.09001 * 117.49874 * 0.02562 * 27 26 11 43 43 H 1.09008 * 117.49648 * 145.02121 * 27 26 11 44 44 H 1.09002 * 117.50274 * 214.97980 * 28 26 11 45 45 H 1.09005 * 117.49575 * 359.97438 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0637 -4.8197 0.0022 12 1 0.4979 -4.8134 0.9338 13 7 0.1438 -4.6762 -1.1289 14 6 -1.0786 -5.2418 -1.0792 15 8 -1.4189 -5.8651 -0.0960 16 6 -2.0226 -5.0996 -2.2452 17 1 -2.2324 -4.0489 -2.4457 18 6 -3.3292 -5.8816 -1.9921 19 6 -3.7314 -6.4217 -3.3495 20 6 -4.9457 -6.9193 -3.7999 21 6 -5.0388 -7.3499 -5.1138 22 6 -3.9234 -7.2684 -5.9261 23 7 -2.7865 -6.7903 -5.4646 24 6 -2.6570 -6.3702 -4.2168 25 6 -1.4529 -5.7947 -3.5001 26 6 1.8244 -6.1412 -0.1234 27 6 1.6659 -6.9264 -1.4269 28 6 1.0016 -7.4309 -0.1435 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3880 0.0016 31 1 2.6852 -3.7142 0.8912 32 1 2.6840 -3.7149 -0.8888 33 1 0.4160 -4.1778 -1.9152 34 1 -3.1505 -6.7021 -1.2971 35 1 -4.0992 -5.2157 -1.6026 36 1 -5.7996 -6.9703 -3.1407 37 1 -5.9687 -7.7432 -5.4971 38 1 -3.9851 -7.6008 -6.9518 39 1 -0.9457 -5.0691 -4.1358 40 1 -0.7658 -6.5907 -3.2132 41 1 2.7970 -6.1724 0.3677 42 1 1.0199 -6.5013 -2.1951 43 1 2.5341 -7.4745 -1.7931 44 1 1.4330 -8.3106 0.3341 45 1 -0.0817 -7.3379 -0.0667 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754459311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:46 Heat of formation + Delta-G solvation = 37.167564 kcal Electronic energy + Delta-G solvation = -26268.440898 eV Core-core repulsion = 22672.737114 eV Total energy + Delta-G solvation = -3595.703784 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.09093 -39.88890 -37.43615 -35.82776 -34.91751 -33.33041 -32.79731 -31.25283 -29.79044 -28.15387 -27.82997 -24.55844 -23.92553 -22.28923 -22.00811 -21.94829 -21.48592 -19.99841 -19.65399 -17.44406 -17.19165 -16.76500 -16.53376 -16.01832 -15.74010 -15.01264 -14.93955 -14.54927 -14.32570 -13.89237 -13.58554 -13.29123 -13.23947 -13.08602 -13.02443 -12.81550 -12.57403 -12.18734 -11.87937 -11.66262 -11.45026 -11.39854 -11.24877 -11.18396 -10.91302 -10.85453 -10.23839 -10.08773 -9.91712 -9.82579 -9.62158 -9.53359 -9.47037 -8.94836 -8.86769 -8.67166 -6.98915 -5.81270 -3.10835 0.90965 1.10252 2.77276 3.34595 3.40787 3.46629 3.48634 3.58102 3.76729 4.04713 4.29169 4.50168 4.53846 4.69723 4.74468 4.83168 4.91342 4.98421 5.07128 5.16243 5.19224 5.27125 5.39029 5.50873 5.52390 5.56423 5.61138 5.66210 5.76013 5.80848 5.86934 5.92572 5.99410 6.00794 6.05064 6.08554 6.22512 6.30914 6.47067 6.50127 6.51592 6.67837 6.91067 7.66350 7.79899 7.81799 8.36669 8.45855 9.48877 10.04196 10.39684 11.41108 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.003471 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.068906 B = 8065.707195 C = 9299.168825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.731 5.731 10 C 0.148 3.852 11 C 0.168 3.832 12 H 0.091 0.909 13 N -0.704 5.704 14 C 0.528 3.472 15 O -0.539 6.539 16 C -0.111 4.111 17 H 0.116 0.884 18 C -0.063 4.063 19 C -0.142 4.142 20 C -0.065 4.065 21 C -0.175 4.175 22 C 0.098 3.902 23 N -0.479 5.479 24 C 0.122 3.878 25 C -0.061 4.061 26 C -0.160 4.160 27 C -0.179 4.179 28 C -0.188 4.188 29 H 0.255 0.745 30 H 0.386 0.614 31 H 0.034 0.966 32 H 0.027 0.973 33 H 0.406 0.594 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.156 0.844 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.937 -16.727 -8.790 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.376 5.376 10 C 0.020 3.980 11 C 0.063 3.937 12 H 0.109 0.891 13 N -0.354 5.354 14 C 0.314 3.686 15 O -0.417 6.417 16 C -0.133 4.133 17 H 0.134 0.866 18 C -0.101 4.101 19 C -0.144 4.144 20 C -0.091 4.091 21 C -0.195 4.195 22 C -0.059 4.059 23 N -0.187 5.187 24 C -0.015 4.015 25 C -0.099 4.099 26 C -0.179 4.179 27 C -0.216 4.216 28 C -0.224 4.224 29 H 0.064 0.936 30 H 0.220 0.780 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.242 0.758 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.173 0.827 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.111 0.889 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.299 -16.990 -8.636 20.073 hybrid contribution -0.476 1.175 0.089 1.271 sum -6.775 -15.815 -8.547 19.211 Atomic orbital electron populations 1.69674 1.05093 1.25574 1.57580 1.24743 0.95516 0.97703 1.02855 0.86122 0.78795 0.84095 0.77181 1.20555 1.21875 1.21877 1.19252 0.91066 0.84025 1.42885 0.91084 1.42347 1.05984 0.99729 1.89582 1.20913 0.93056 0.85082 0.98982 1.20763 0.90194 0.92793 0.89948 0.89063 1.45969 1.14523 1.54077 1.20856 1.20069 0.82040 0.78524 0.87999 1.90611 1.75823 1.41704 1.33602 1.22021 0.95180 1.02602 0.93518 0.86615 1.20916 0.95685 1.00351 0.93127 1.21591 0.94719 1.00050 0.97992 1.21081 0.96772 0.95623 0.95636 1.22059 1.00489 1.02279 0.94689 1.22613 0.87716 0.95646 0.99940 1.66842 1.26886 1.10116 1.14865 1.21730 0.95559 0.95137 0.89111 1.20947 0.94620 1.00364 0.93995 1.22693 1.00785 0.92481 1.01969 1.22931 1.03020 1.04046 0.91637 1.23339 1.01542 0.96794 1.00762 0.93551 0.78019 0.94840 0.95559 0.75847 0.87924 0.89638 0.84911 0.84637 0.82662 0.88664 0.88745 0.87310 0.88939 0.89513 0.89815 0.86560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.43 13.06 55.49 0.72 -26.70 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.54 5.43 -59.91 -0.33 -17.87 16 10 C 0.15 2.78 5.80 -4.04 -0.02 2.75 16 11 C 0.17 2.70 2.59 -67.93 -0.18 2.52 16 12 H 0.09 1.68 7.58 -51.93 -0.39 1.29 16 13 N -0.70 -10.37 3.04 -53.81 -0.16 -10.53 16 14 C 0.53 7.72 5.87 -10.98 -0.06 7.65 16 15 O -0.54 -9.24 12.55 5.55 0.07 -9.17 16 16 C -0.11 -1.35 3.46 -90.35 -0.31 -1.66 16 17 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 18 C -0.06 -0.73 6.11 -26.76 -0.16 -0.89 16 19 C -0.14 -1.61 6.16 -104.05 -0.64 -2.25 16 20 C -0.07 -0.63 10.17 -39.27 -0.40 -1.03 16 21 C -0.18 -1.50 10.12 -39.46 -0.40 -1.90 16 22 C 0.10 0.97 11.18 -17.62 -0.20 0.77 16 23 N -0.48 -6.04 10.35 -9.19 -0.10 -6.13 16 24 C 0.12 1.51 7.32 -82.03 -0.60 0.91 16 25 C -0.06 -0.68 6.30 -26.79 -0.17 -0.85 16 26 C -0.16 -2.18 5.70 -90.63 -0.52 -2.70 16 27 C -0.18 -2.21 9.73 -26.70 -0.26 -2.47 16 28 C -0.19 -2.51 9.82 -26.70 -0.26 -2.77 16 29 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.39 9.83 7.33 -40.82 -0.30 9.53 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.41 5.77 8.60 -40.82 -0.35 5.41 16 34 H 0.10 1.28 7.03 -51.93 -0.36 0.92 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.09 1.04 6.60 -51.93 -0.34 0.70 16 41 H 0.11 1.39 8.11 -51.93 -0.42 0.97 16 42 H 0.09 1.12 5.37 -51.93 -0.28 0.85 16 43 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 44 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.12 1.78 5.00 -51.93 -0.26 1.52 16 LS Contribution 364.06 15.07 5.49 5.49 Total: -1.00 -31.81 364.06 -10.24 -42.06 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -6.49 Total: 14.92 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -4.43 Total: -9.01 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.14 Total: -61.23 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.07 Total: -9.17 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.81 -10.24 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754459311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.223 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds