Wall clock time and date at job start Tue Mar 31 2020 11:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 120.00115 * 2 1 4 4 H 1.48496 * 109.47015 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46893 * 299.99963 * 3 2 1 6 6 H 1.48505 * 109.47184 * 59.99957 * 3 2 1 7 7 C 1.38810 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00294 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99864 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99899 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46925 * 180.02562 * 10 9 7 12 12 H 1.08995 * 109.47216 * 295.00133 * 11 10 9 13 13 N 1.46498 * 109.47065 * 55.00022 * 11 10 9 14 14 C 1.34777 * 119.99828 * 204.72115 * 13 11 10 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 11 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 11 17 17 H 1.09003 * 110.72451 * 300.70564 * 16 14 13 18 18 C 1.54364 * 110.82559 * 177.29585 * 16 14 13 19 19 C 1.51530 * 104.97081 * 215.62640 * 18 16 14 20 20 C 1.38742 * 130.61554 * 197.05458 * 19 18 16 21 21 C 1.38577 * 118.55875 * 179.78840 * 20 19 18 22 22 C 1.38225 * 118.99023 * 359.97438 * 21 20 19 23 23 N 1.31688 * 120.80225 * 0.02562 * 22 21 20 24 24 C 1.32300 * 122.03225 * 0.02562 * 23 22 21 25 25 C 1.51479 * 130.14428 * 179.97438 * 24 23 22 26 26 C 1.52999 * 109.47083 * 175.00128 * 11 10 9 27 27 C 1.52994 * 117.49964 * 248.74503 * 26 11 10 28 28 C 1.52995 * 117.50099 * 180.08622 * 26 11 10 29 29 H 0.97004 * 119.99658 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00041 * 0.02562 * 9 7 2 31 31 H 1.08997 * 109.46993 * 60.00872 * 10 9 7 32 32 H 1.08999 * 109.47017 * 300.00292 * 10 9 7 33 33 H 0.97001 * 120.00384 * 25.00562 * 13 11 10 34 34 H 1.09006 * 110.31214 * 334.39312 * 18 16 14 35 35 H 1.08997 * 110.31087 * 96.57076 * 18 16 14 36 36 H 1.07997 * 120.71527 * 359.76228 * 20 19 18 37 37 H 1.07996 * 120.50096 * 179.97438 * 21 20 19 38 38 H 1.07996 * 119.59841 * 180.02562 * 22 21 20 39 39 H 1.08991 * 110.29664 * 43.87795 * 25 24 23 40 40 H 1.08997 * 110.37162 * 281.78515 * 25 24 23 41 41 H 1.09000 * 115.55153 * 34.41700 * 26 11 10 42 42 H 1.09001 * 117.49874 * 0.02562 * 27 26 11 43 43 H 1.09008 * 117.49648 * 145.02121 * 27 26 11 44 44 H 1.09002 * 117.50274 * 214.97980 * 28 26 11 45 45 H 1.09005 * 117.49575 * 359.97438 * 28 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0637 -4.8197 0.0022 12 1 0.4979 -4.8134 0.9338 13 7 0.1438 -4.6762 -1.1289 14 6 -1.0786 -5.2418 -1.0792 15 8 -1.4189 -5.8651 -0.0960 16 6 -2.0226 -5.0996 -2.2452 17 1 -2.2324 -4.0489 -2.4457 18 6 -3.3292 -5.8816 -1.9921 19 6 -3.7314 -6.4217 -3.3495 20 6 -4.9457 -6.9193 -3.7999 21 6 -5.0388 -7.3499 -5.1138 22 6 -3.9234 -7.2684 -5.9261 23 7 -2.7865 -6.7903 -5.4646 24 6 -2.6570 -6.3702 -4.2168 25 6 -1.4529 -5.7947 -3.5001 26 6 1.8244 -6.1412 -0.1234 27 6 1.6659 -6.9264 -1.4269 28 6 1.0016 -7.4309 -0.1435 29 1 -0.4850 0.8401 0.0004 30 1 0.3556 -2.3880 0.0016 31 1 2.6852 -3.7142 0.8912 32 1 2.6840 -3.7149 -0.8888 33 1 0.4160 -4.1778 -1.9152 34 1 -3.1505 -6.7021 -1.2971 35 1 -4.0992 -5.2157 -1.6026 36 1 -5.7996 -6.9703 -3.1407 37 1 -5.9687 -7.7432 -5.4971 38 1 -3.9851 -7.6008 -6.9518 39 1 -0.9457 -5.0691 -4.1358 40 1 -0.7658 -6.5907 -3.2132 41 1 2.7970 -6.1724 0.3677 42 1 1.0199 -6.5013 -2.1951 43 1 2.5341 -7.4745 -1.7931 44 1 1.4330 -8.3106 0.3341 45 1 -0.0817 -7.3379 -0.0667 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754459311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:45 Heat of formation + Delta-G solvation = 18.203664 kcal Electronic energy + Delta-G solvation = -26269.263234 eV Core-core repulsion = 22672.737114 eV Total energy + Delta-G solvation = -3596.526120 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.02572 -40.96872 -38.58975 -36.81140 -36.53549 -34.79361 -33.60906 -33.01432 -30.84801 -29.53625 -28.78924 -26.06690 -25.21690 -23.46267 -23.05861 -22.81095 -22.75688 -21.12252 -20.86114 -19.22632 -18.40791 -17.66369 -17.46776 -17.05695 -17.01030 -16.58006 -15.85338 -15.78247 -15.49085 -15.17863 -15.08135 -14.67427 -14.58392 -14.11665 -13.98195 -13.77461 -13.65134 -13.52450 -13.12241 -12.88773 -12.75896 -12.66202 -12.58586 -12.36997 -12.27487 -12.23606 -12.03431 -11.82684 -11.26627 -10.99065 -10.86195 -10.73929 -10.65048 -10.27844 -9.93362 -9.67362 -8.99370 -7.93390 -5.22269 0.13417 0.33675 1.49206 1.49922 1.59300 1.59786 2.17496 2.56687 2.79372 2.93960 2.97355 3.37217 3.41781 3.62552 3.65714 3.79868 3.92061 4.01408 4.07336 4.11539 4.19201 4.20885 4.25413 4.39516 4.46843 4.52316 4.58470 4.65940 4.66578 4.77705 4.80184 4.86254 4.91088 4.97714 5.03544 5.10159 5.17706 5.22743 5.29170 5.30406 5.40635 5.52460 5.61210 5.78320 6.27790 6.58687 7.02830 7.25920 7.35569 8.08699 8.32915 9.29698 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.003471 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.068906 B = 8065.707195 C = 9299.168825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.298 1.298 7 C -0.241 4.241 8 H 0.078 0.922 9 N -0.742 5.742 10 C 0.150 3.850 11 C 0.179 3.821 12 H 0.063 0.937 13 N -0.702 5.702 14 C 0.528 3.472 15 O -0.566 6.566 16 C -0.105 4.105 17 H 0.116 0.884 18 C -0.058 4.058 19 C -0.155 4.155 20 C -0.071 4.071 21 C -0.166 4.166 22 C 0.088 3.912 23 N -0.507 5.507 24 C 0.099 3.901 25 C -0.053 4.053 26 C -0.166 4.166 27 C -0.165 4.165 28 C -0.190 4.190 29 H 0.250 0.750 30 H 0.375 0.625 31 H 0.036 0.964 32 H 0.040 0.960 33 H 0.410 0.590 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.155 0.845 37 H 0.172 0.828 38 H 0.183 0.817 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.122 0.878 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.707 -17.774 -10.157 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.800 3.200 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.225 1.225 7 C -0.373 4.373 8 H 0.096 0.904 9 N -0.385 5.385 10 C 0.024 3.976 11 C 0.074 3.926 12 H 0.081 0.919 13 N -0.352 5.352 14 C 0.315 3.685 15 O -0.445 6.445 16 C -0.127 4.127 17 H 0.134 0.866 18 C -0.095 4.095 19 C -0.157 4.157 20 C -0.096 4.096 21 C -0.185 4.185 22 C -0.069 4.069 23 N -0.216 5.216 24 C -0.037 4.037 25 C -0.091 4.091 26 C -0.185 4.185 27 C -0.202 4.202 28 C -0.226 4.226 29 H 0.058 0.942 30 H 0.207 0.793 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.246 0.754 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.173 0.827 37 H 0.189 0.811 38 H 0.200 0.800 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.140 0.860 42 H 0.110 0.890 43 H 0.125 0.875 44 H 0.118 0.882 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.026 -18.065 -10.011 21.514 hybrid contribution -0.585 1.401 0.498 1.598 sum -6.611 -16.664 -9.513 20.295 Atomic orbital electron populations 1.69824 1.06530 1.25840 1.59539 1.25509 0.96312 1.00911 1.03782 0.85113 0.78325 0.80075 0.76456 1.19017 1.22100 1.22526 1.19641 0.91548 0.85113 1.40955 0.90423 1.42509 1.05691 1.00854 1.89463 1.21024 0.93406 0.83889 0.99327 1.20477 0.89632 0.93224 0.89309 0.91888 1.45924 1.14592 1.54123 1.20513 1.20451 0.82008 0.77745 0.88272 1.90602 1.76268 1.42845 1.34834 1.21949 0.94978 1.02850 0.92932 0.86577 1.20817 0.95417 0.99888 0.93413 1.21637 0.95584 1.01097 0.97428 1.21466 0.96736 0.94809 0.96630 1.22455 1.01430 1.00731 0.93891 1.23201 0.87400 0.94880 1.01396 1.66840 1.28527 1.11232 1.15024 1.21813 0.96047 0.96293 0.89594 1.20849 0.94571 1.00292 0.93376 1.22608 1.01048 0.91168 1.03712 1.23017 1.03310 1.02905 0.90931 1.23281 1.00399 0.97040 1.01910 0.94157 0.79258 0.94636 0.94243 0.75446 0.89186 0.89251 0.82695 0.81092 0.79970 0.88121 0.88845 0.85968 0.88975 0.87474 0.88231 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.88 13.06 21.65 0.28 -57.60 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 7 C -0.24 -12.93 9.99 84.03 0.84 -12.09 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.74 -35.80 5.43 -343.45 -1.87 -37.67 16 10 C 0.15 5.59 5.80 86.38 0.50 6.09 16 11 C 0.18 5.78 2.59 44.99 0.12 5.90 16 12 H 0.06 2.41 7.58 -2.39 -0.02 2.39 16 13 N -0.70 -20.96 3.04 -442.53 -1.35 -22.31 16 14 C 0.53 15.89 5.87 87.66 0.51 16.40 16 15 O -0.57 -20.12 12.55 -3.04 -0.04 -20.16 16 16 C -0.11 -2.61 3.46 -10.62 -0.04 -2.65 16 17 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 18 C -0.06 -1.35 6.11 30.58 0.19 -1.16 16 19 C -0.16 -3.46 6.16 -19.49 -0.12 -3.58 16 20 C -0.07 -1.23 10.17 22.47 0.23 -1.00 16 21 C -0.17 -2.39 10.12 22.35 0.23 -2.16 16 22 C 0.09 1.56 11.18 84.71 0.95 2.51 16 23 N -0.51 -12.34 10.35 -182.97 -1.89 -14.23 16 24 C 0.10 2.42 7.32 42.72 0.31 2.73 16 25 C -0.05 -1.19 6.30 30.55 0.19 -1.00 16 26 C -0.17 -4.36 5.70 -10.80 -0.06 -4.42 16 27 C -0.16 -3.78 9.73 30.61 0.30 -3.48 16 28 C -0.19 -4.90 9.82 30.61 0.30 -4.59 16 29 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.38 19.56 7.33 -92.71 -0.68 18.88 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.41 11.70 8.60 -92.71 -0.80 10.90 16 34 H 0.09 2.34 7.03 -2.38 -0.02 2.32 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 37 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 38 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.09 2.07 6.60 -2.39 -0.02 2.06 16 41 H 0.12 2.90 8.11 -2.39 -0.02 2.88 16 42 H 0.09 2.13 5.37 -2.39 -0.01 2.12 16 43 H 0.11 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.10 2.95 5.00 -2.38 -0.01 2.93 16 Total: -1.00 -68.57 364.06 1.62 -66.94 By element: Atomic # 1 Polarization: 44.28 SS G_CDS: -0.45 Total: 43.83 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: 4.91 Total: -6.11 kcal Atomic # 7 Polarization: -126.98 SS G_CDS: -4.83 Total: -131.80 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.04 Total: -20.16 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -68.57 1.62 -66.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754459311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.146 kcal (2) G-P(sol) polarization free energy of solvation -68.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds