Wall clock time and date at job start Tue Mar 31 2020 11:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99929 * 2 1 4 4 H 1.48499 * 109.47045 * 240.00149 * 3 2 1 5 5 H 1.48498 * 109.46967 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47210 * 119.99909 * 3 2 1 7 7 C 1.38818 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99730 * 179.97438 * 7 2 1 9 9 N 1.36930 * 119.99881 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99940 * 173.71780 * 9 7 2 11 11 C 1.52998 * 112.84707 * 294.90207 * 10 9 7 12 12 N 1.46496 * 109.47454 * 292.11897 * 11 10 9 13 13 C 1.34769 * 120.00363 * 182.08806 * 12 11 10 14 14 O 1.21287 * 119.99877 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00249 * 180.02562 * 13 12 11 16 16 H 1.08999 * 110.26016 * 302.05523 * 15 13 12 17 17 C 1.54342 * 110.29682 * 180.02562 * 15 13 12 18 18 C 1.54368 * 102.38925 * 214.73383 * 17 15 13 19 19 C 1.51216 * 105.11800 * 26.28970 * 18 17 15 20 20 C 1.38747 * 130.68838 * 162.87752 * 19 18 17 21 21 C 1.38579 * 118.55794 * 179.97438 * 20 19 18 22 22 C 1.38224 * 118.98651 * 359.97438 * 21 20 19 23 23 N 1.31690 * 120.80341 * 359.97438 * 22 21 20 24 24 C 1.32298 * 122.03343 * 0.03851 * 23 22 21 25 25 C 1.53782 * 113.61446 * 66.09856 * 10 9 7 26 26 C 1.53957 * 87.01993 * 89.23039 * 25 10 9 27 27 C 1.53786 * 87.11202 * 25.36392 * 26 25 10 28 28 H 0.96998 * 119.99761 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00157 * 353.71005 * 9 7 2 30 30 H 1.09005 * 109.46853 * 172.12276 * 11 10 9 31 31 H 1.09003 * 109.47110 * 52.12498 * 11 10 9 32 32 H 0.97000 * 119.99556 * 2.09367 * 12 11 10 33 33 H 1.09003 * 110.82029 * 332.95554 * 17 15 13 34 34 H 1.09004 * 110.82354 * 96.30622 * 17 15 13 35 35 H 1.08992 * 110.31138 * 145.20450 * 18 17 15 36 36 H 1.09000 * 110.30845 * 267.27782 * 18 17 15 37 37 H 1.08000 * 120.72065 * 359.95828 * 20 19 18 38 38 H 1.07997 * 120.50503 * 180.02562 * 21 20 19 39 39 H 1.08005 * 119.59953 * 179.97438 * 22 21 20 40 40 H 1.09000 * 113.61584 * 203.74935 * 25 10 9 41 41 H 1.08994 * 113.61551 * 334.65343 * 25 10 9 42 42 H 1.08992 * 113.53936 * 270.81297 * 26 25 10 43 43 H 1.08999 * 113.66898 * 139.93253 * 26 25 10 44 44 H 1.08995 * 113.61370 * 220.09379 * 27 26 25 45 45 H 1.09002 * 113.61594 * 89.18649 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0516 -3.6529 -0.1410 11 6 2.7379 -3.7972 -1.5008 12 7 1.7227 -3.9289 -2.5487 13 6 2.0970 -4.1113 -3.8305 14 8 3.2743 -4.1669 -4.1164 15 6 1.0526 -4.2463 -4.9085 16 1 0.3882 -5.0817 -4.6879 17 6 1.7250 -4.4463 -6.2833 18 6 0.7660 -3.6973 -7.2331 19 6 0.0975 -2.6490 -6.3725 20 6 -0.6039 -1.5041 -6.7225 21 6 -1.1199 -0.7085 -5.7120 22 6 -0.9189 -1.0822 -4.3965 23 7 -0.2487 -2.1767 -4.1012 24 6 0.2595 -2.9622 -5.0366 25 6 2.9714 -3.9697 1.0500 26 6 1.7629 -4.6750 1.6922 27 6 1.2264 -4.8850 0.2664 28 1 -0.4850 0.8401 0.0004 29 1 0.3600 -2.3906 0.0901 30 1 3.3718 -4.6839 -1.4955 31 1 3.3484 -2.9153 -1.6951 32 1 0.7811 -3.8847 -2.3200 33 1 2.7169 -3.9946 -6.2988 34 1 1.7791 -5.5048 -6.5378 35 1 1.3257 -3.2240 -8.0398 36 1 0.0241 -4.3841 -7.6405 37 1 -0.7444 -1.2387 -7.7599 38 1 -1.6713 0.1894 -5.9487 39 1 -1.3164 -0.4692 -3.6011 40 1 3.7900 -4.6453 0.8019 41 1 3.3016 -3.0850 1.5942 42 1 1.1444 -4.0134 2.2985 43 1 2.0188 -5.6031 2.2035 44 1 0.1500 -4.7379 0.1789 45 1 1.5671 -5.8112 -0.1964 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754984912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:42 Heat of formation + Delta-G solvation = 9.712428 kcal Electronic energy + Delta-G solvation = -27028.416437 eV Core-core repulsion = 23431.522109 eV Total energy + Delta-G solvation = -3596.894328 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.97864 -40.68375 -39.75215 -36.94801 -35.28781 -35.15031 -33.60603 -31.88609 -30.38200 -29.83610 -28.02851 -26.71264 -25.67231 -24.43774 -23.67221 -22.86555 -22.13228 -20.93564 -19.70618 -19.07603 -18.43083 -17.71610 -17.32453 -16.97888 -16.65447 -16.21424 -15.94076 -15.90762 -15.46953 -15.27121 -15.03295 -14.57730 -14.44971 -14.17201 -14.11239 -13.80767 -13.48216 -13.09738 -12.96239 -12.91823 -12.88186 -12.64605 -12.56168 -12.46545 -12.21101 -11.95848 -11.92466 -11.59373 -11.47924 -11.10447 -10.90201 -10.72976 -10.59641 -10.14158 -9.88652 -9.66084 -8.92581 -7.88758 -5.14564 0.11980 0.39387 1.41139 1.42628 1.47627 1.63505 2.35468 2.54842 2.84756 3.01602 3.39769 3.41511 3.75191 3.76656 3.83476 3.92501 3.97077 4.02265 4.09822 4.11249 4.21313 4.25839 4.32813 4.47156 4.62022 4.65204 4.68651 4.83333 4.85611 4.88787 4.90420 4.99294 5.01202 5.10279 5.12528 5.22692 5.27454 5.30605 5.31966 5.42781 5.55323 5.65781 5.72080 5.79763 6.33868 6.68134 7.11301 7.31152 7.40179 8.14544 8.38985 9.32912 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.005580 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.128568 B = 5016.857352 C = 6698.477599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.059 4.059 3 Si 0.950 3.050 4 H -0.295 1.295 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.222 4.222 8 H 0.059 0.941 9 N -0.699 5.699 10 C 0.158 3.842 11 C 0.129 3.871 12 N -0.690 5.690 13 C 0.513 3.487 14 O -0.590 6.590 15 C -0.056 4.056 16 H 0.140 0.860 17 C -0.099 4.099 18 C -0.067 4.067 19 C -0.149 4.149 20 C -0.068 4.068 21 C -0.165 4.165 22 C 0.083 3.917 23 N -0.493 5.493 24 C 0.088 3.912 25 C -0.149 4.149 26 C -0.117 4.117 27 C -0.127 4.127 28 H 0.248 0.752 29 H 0.376 0.624 30 H 0.070 0.930 31 H 0.020 0.980 32 H 0.407 0.593 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.170 0.830 38 H 0.164 0.836 39 H 0.144 0.856 40 H 0.093 0.907 41 H 0.046 0.954 42 H 0.061 0.939 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.183 -11.335 -13.634 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.252 4.252 3 Si 0.781 3.219 4 H -0.223 1.223 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.077 0.923 9 N -0.338 5.338 10 C 0.067 3.933 11 C 0.003 3.997 12 N -0.337 5.337 13 C 0.299 3.701 14 O -0.472 6.472 15 C -0.078 4.078 16 H 0.157 0.843 17 C -0.137 4.137 18 C -0.104 4.104 19 C -0.151 4.151 20 C -0.093 4.093 21 C -0.184 4.184 22 C -0.074 4.074 23 N -0.201 5.201 24 C -0.050 4.050 25 C -0.189 4.189 26 C -0.155 4.155 27 C -0.165 4.165 28 H 0.057 0.943 29 H 0.209 0.791 30 H 0.089 0.911 31 H 0.039 0.961 32 H 0.243 0.757 33 H 0.085 0.915 34 H 0.133 0.867 35 H 0.115 0.885 36 H 0.133 0.867 37 H 0.187 0.813 38 H 0.181 0.819 39 H 0.161 0.839 40 H 0.112 0.888 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.106 0.894 44 H 0.081 0.919 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.133 -11.435 -12.914 17.380 hybrid contribution -0.358 2.092 -0.071 2.124 sum -2.491 -9.343 -12.985 16.190 Atomic orbital electron populations 1.69769 1.05688 1.25371 1.59281 1.25216 0.96158 0.99673 1.04138 0.85578 0.77543 0.81328 0.77452 1.22264 1.21802 1.20691 1.19153 0.90598 0.85138 1.40567 0.92346 1.41996 1.05582 0.99712 1.86517 1.21114 0.94233 0.87163 0.90830 1.21670 0.90682 0.98930 0.88457 1.45742 1.10987 1.70568 1.06400 1.20802 0.89668 0.75540 0.84048 1.90612 1.20160 1.53660 1.82733 1.21011 0.94998 0.95598 0.96165 0.84293 1.22311 0.98533 1.03397 0.89416 1.21040 0.97905 0.94703 0.96724 1.21829 0.99443 0.97663 0.96117 1.21443 0.94398 0.92051 1.01427 1.22391 1.01260 1.01853 0.92913 1.22764 0.94979 0.92747 0.96906 1.66762 1.08548 1.05434 1.39401 1.21709 0.96956 0.95739 0.90580 1.23361 0.97524 1.00028 0.97998 1.22569 0.96890 1.00180 0.95826 1.23089 0.99396 0.96996 0.96990 0.94328 0.79064 0.91148 0.96111 0.75731 0.91502 0.86671 0.88458 0.86713 0.81257 0.81860 0.83906 0.88832 0.93476 0.92054 0.89428 0.91880 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.86 13.07 21.65 0.28 -56.58 16 2 C -0.06 -3.37 5.50 84.86 0.47 -2.91 16 3 Si 0.95 47.78 29.55 68.60 2.03 49.81 16 4 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 5 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 6 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 7 C -0.22 -12.38 9.04 84.04 0.76 -11.62 16 8 H 0.06 3.30 7.83 -2.91 -0.02 3.27 16 9 N -0.70 -34.09 5.18 -300.96 -1.56 -35.65 16 10 C 0.16 6.11 0.80 4.13 0.00 6.11 16 11 C 0.13 5.14 5.08 86.38 0.44 5.58 16 12 N -0.69 -25.95 5.24 -463.07 -2.43 -28.38 16 13 C 0.51 18.77 7.15 87.66 0.63 19.39 16 14 O -0.59 -25.04 15.49 -3.05 -0.05 -25.08 16 15 C -0.06 -1.54 3.26 -11.59 -0.04 -1.58 16 16 H 0.14 3.01 8.14 -2.39 -0.02 2.99 16 17 C -0.10 -2.09 6.35 31.51 0.20 -1.89 16 18 C -0.07 -1.10 6.77 30.48 0.21 -0.90 16 19 C -0.15 -3.61 6.16 -19.60 -0.12 -3.73 16 20 C -0.07 -1.45 10.17 22.47 0.23 -1.23 16 21 C -0.16 -4.12 10.12 22.35 0.23 -3.89 16 22 C 0.08 2.85 11.18 84.71 0.95 3.79 16 23 N -0.49 -18.61 9.88 -182.98 -1.81 -20.42 16 24 C 0.09 2.78 6.61 42.72 0.28 3.06 16 25 C -0.15 -5.16 7.29 31.18 0.23 -4.93 16 26 C -0.12 -3.54 8.00 31.18 0.25 -3.29 16 27 C -0.13 -3.86 7.07 31.12 0.22 -3.64 16 28 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.38 19.77 7.87 -92.71 -0.73 19.04 16 30 H 0.07 2.53 8.02 -2.38 -0.02 2.51 16 31 H 0.02 0.99 7.80 -2.39 -0.02 0.97 16 32 H 0.41 15.32 8.01 -92.71 -0.74 14.57 16 33 H 0.07 1.81 7.02 -2.39 -0.02 1.79 16 34 H 0.11 1.72 8.14 -2.38 -0.02 1.71 16 35 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.14 5.18 8.06 -2.91 -0.02 5.16 16 40 H 0.09 2.75 8.01 -2.39 -0.02 2.73 16 41 H 0.05 1.88 7.87 -2.39 -0.02 1.86 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.06 1.97 8.09 -2.39 -0.02 1.95 16 45 H 0.10 2.63 8.10 -2.39 -0.02 2.61 16 Total: -1.00 -73.25 370.22 0.93 -72.32 By element: Atomic # 1 Polarization: 46.12 SS G_CDS: -0.46 Total: 45.66 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 4.92 Total: -1.68 kcal Atomic # 7 Polarization: -135.52 SS G_CDS: -5.51 Total: -141.03 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.05 Total: -25.08 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -73.25 0.93 -72.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754984912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.033 kcal (2) G-P(sol) polarization free energy of solvation -73.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds