Wall clock time and date at job start Tue Mar 31 2020 10:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99634 * 2 1 4 4 H 1.48493 * 109.47249 * 269.99772 * 3 2 1 5 5 H 1.48501 * 109.46903 * 30.00224 * 3 2 1 6 6 H 1.48507 * 109.46998 * 149.99715 * 3 2 1 7 7 C 1.37869 * 120.00571 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00359 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99779 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46936 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99963 * 275.00230 * 10 9 7 12 12 C 1.53009 * 109.46824 * 275.00260 * 11 10 9 13 13 C 1.52992 * 117.49697 * 243.62292 * 12 11 10 14 14 C 1.53001 * 60.00191 * 252.51101 * 13 12 11 15 15 S 1.65596 * 120.00005 * 95.00021 * 10 9 7 16 16 O 1.42105 * 104.27666 * 153.92608 * 15 10 9 17 17 O 1.42105 * 104.27792 * 26.07376 * 15 10 9 18 18 C 1.81389 * 104.45192 * 269.99772 * 15 10 9 19 19 C 1.53002 * 109.47346 * 179.97438 * 18 15 10 20 20 C 1.52997 * 109.46817 * 64.99991 * 19 18 15 21 21 C 1.52999 * 109.47317 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.47159 * 300.00546 * 21 20 19 23 23 C 1.52997 * 109.47452 * 59.99536 * 22 21 20 24 24 C 1.53000 * 109.47233 * 184.99797 * 19 18 15 25 25 H 0.96999 * 120.00255 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46948 * 60.00098 * 9 7 2 27 27 H 1.09000 * 109.47144 * 299.99992 * 9 7 2 28 28 H 1.09002 * 109.47176 * 34.99727 * 11 10 9 29 29 H 1.09000 * 109.47479 * 155.00573 * 11 10 9 30 30 H 1.09000 * 115.55091 * 29.32509 * 12 11 10 31 31 H 1.09004 * 117.50440 * 0.02562 * 13 12 11 32 32 H 1.09001 * 117.50438 * 145.02203 * 13 12 11 33 33 H 1.09003 * 117.49631 * 252.51410 * 14 13 12 34 34 H 1.09000 * 117.50031 * 107.48635 * 14 13 12 35 35 H 1.09008 * 109.47130 * 60.00011 * 18 15 10 36 36 H 1.08997 * 109.47306 * 300.00006 * 18 15 10 37 37 H 1.09002 * 109.47070 * 305.00171 * 19 18 15 38 38 H 1.08996 * 109.47853 * 300.00202 * 20 19 18 39 39 H 1.09002 * 109.47153 * 60.00231 * 20 19 18 40 40 H 1.09000 * 109.47486 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.46716 * 60.00091 * 21 20 19 42 42 H 1.09002 * 109.46935 * 299.99411 * 22 21 20 43 43 H 1.09001 * 109.46812 * 179.97438 * 22 21 20 44 44 H 1.08993 * 109.47194 * 179.97438 * 23 22 21 45 45 H 1.09002 * 109.46695 * 59.99734 * 23 22 21 46 46 H 1.08992 * 109.47399 * 300.00166 * 24 19 18 47 47 H 1.09004 * 109.46724 * 60.00652 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.7634 -4.0974 -1.2644 12 6 1.8036 -5.1102 -1.8924 13 6 2.3001 -6.5485 -2.0524 14 6 2.1540 -5.6484 -3.2811 15 16 2.6464 -4.3231 1.4281 16 8 3.0190 -5.6445 1.0615 17 8 1.5447 -4.0862 2.2939 18 6 4.0974 -3.3802 1.9717 19 6 4.6063 -3.9470 3.2986 20 6 5.1094 -5.3758 3.0833 21 6 5.6188 -5.9425 4.4100 22 6 6.7640 -5.0715 4.9305 23 6 6.2609 -3.6427 5.1459 24 6 5.7513 -3.0762 3.8196 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.9026 -3.2581 -1.9458 29 1 3.7244 -4.5760 -1.0762 30 1 0.7486 -4.9645 -1.6604 31 1 3.3102 -6.7734 -1.7101 32 1 1.5717 -7.3495 -1.9258 33 1 1.3294 -5.8572 -3.9627 34 1 3.0681 -5.2810 -3.7473 35 1 3.8216 -2.3341 2.1058 36 1 4.8824 -3.4554 1.2193 37 1 3.7946 -3.9534 4.0261 38 1 4.2938 -5.9963 2.7121 39 1 5.9211 -5.3694 2.3558 40 1 5.9777 -6.9602 4.2565 41 1 4.8074 -5.9488 5.1378 42 1 7.5754 -5.0651 4.2027 43 1 7.1266 -5.4750 5.8759 44 1 7.0766 -3.0224 5.5171 45 1 5.4495 -3.6491 5.8736 46 1 6.5629 -3.0698 3.0922 47 1 5.3928 -2.0583 3.9731 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078697207.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:58 Heat of formation + Delta-G solvation = -78.252371 kcal Electronic energy + Delta-G solvation = -25971.194875 eV Core-core repulsion = 22473.637307 eV Total energy + Delta-G solvation = -3497.557568 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.72131 -37.52396 -36.43882 -35.28203 -34.76696 -32.78265 -32.41748 -30.77981 -27.82227 -26.72618 -25.38343 -22.69294 -22.53538 -21.98761 -21.44309 -20.20707 -19.79650 -18.12953 -17.04611 -16.52195 -15.96696 -15.63889 -15.35481 -14.93669 -14.50659 -14.36126 -14.22932 -14.07088 -13.84054 -13.46933 -12.81912 -12.61190 -12.43245 -12.39938 -12.16424 -11.83742 -11.70438 -11.46398 -11.39650 -11.26913 -11.17838 -11.15262 -11.12363 -11.05527 -10.82028 -10.63729 -10.52674 -10.51791 -10.19831 -10.11180 -10.06123 -9.82190 -9.61194 -9.42985 -8.51746 -8.00545 -6.13214 -4.21023 0.95845 3.22741 3.29393 3.30831 3.39500 4.19481 4.31749 4.38826 4.55522 4.66097 4.69484 4.82682 5.09639 5.11202 5.17657 5.19049 5.22123 5.27192 5.35284 5.39162 5.44553 5.48506 5.57065 5.66200 5.67271 5.81137 5.87947 5.92514 5.98826 5.99694 6.06505 6.10991 6.17036 6.21409 6.22699 6.23674 6.33463 6.42494 6.42975 6.56663 6.72863 7.36274 7.42767 7.66032 7.83498 8.12680 8.83646 9.45518 10.94548 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.009731 B = 0.005868 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.582289 B = 4770.135321 C = 6906.731818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.893 3.107 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.243 3.757 10 N -0.983 5.983 11 C 0.165 3.835 12 C -0.162 4.162 13 C -0.172 4.172 14 C -0.184 4.184 15 S 2.609 3.391 16 O -0.969 6.969 17 O -0.958 6.958 18 C -0.630 4.630 19 C -0.074 4.074 20 C -0.145 4.145 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.122 4.122 24 C -0.106 4.106 25 H 0.265 0.735 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.141 0.859 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.493 -9.457 3.380 15.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.720 3.280 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.586 4.586 8 H 0.079 0.921 9 C 0.121 3.879 10 N -0.820 5.820 11 C 0.038 3.962 12 C -0.182 4.182 13 C -0.209 4.209 14 C -0.221 4.221 15 S 2.702 3.298 16 O -0.959 6.959 17 O -0.949 6.949 18 C -0.758 4.758 19 C -0.094 4.094 20 C -0.182 4.182 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.160 4.160 24 C -0.145 4.145 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.160 0.840 36 H 0.142 0.858 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.877 -10.036 3.787 15.276 hybrid contribution 0.858 1.721 -0.275 1.943 sum 11.735 -8.315 3.512 14.805 Atomic orbital electron populations 1.69931 1.06021 1.27184 1.49321 1.24948 0.94816 0.99175 0.94825 0.86595 0.79820 0.83367 0.78220 1.20528 1.21031 1.19840 1.21581 0.93491 0.90980 1.52556 0.92061 1.19232 0.87449 0.81504 0.99744 1.57363 1.57129 1.49075 1.18474 1.20596 0.93626 0.95743 0.86203 1.22828 1.01310 0.95413 0.98609 1.22952 1.02657 0.93762 1.01517 1.22919 1.02979 1.05132 0.91102 1.04888 0.76128 0.74699 0.74088 1.93512 1.85233 1.34767 1.82418 1.93559 1.48409 1.86263 1.66666 1.30808 1.21692 1.16866 1.06454 1.20872 0.99094 0.95268 0.94156 1.22056 1.02636 0.95324 0.98203 1.21516 0.98300 0.98825 0.96952 1.21561 0.98071 0.95401 1.00739 1.21565 1.00668 0.96136 0.97587 1.21524 0.97363 0.98829 0.96773 0.92522 0.94199 0.92849 0.89798 0.91633 0.87529 0.88600 0.89495 0.89262 0.89042 0.84027 0.85835 0.90113 0.89897 0.91072 0.91715 0.91799 0.92026 0.92204 0.91995 0.91813 0.91700 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.55 -14.10 9.38 -34.44 -0.32 -14.42 16 8 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 9 C 0.24 5.98 5.41 -5.19 -0.03 5.95 16 10 N -0.98 -19.90 2.70 -115.65 -0.31 -20.21 16 11 C 0.17 2.86 5.54 -4.04 -0.02 2.83 16 12 C -0.16 -2.66 6.01 -90.62 -0.54 -3.20 16 13 C -0.17 -2.48 10.18 -26.73 -0.27 -2.76 16 14 C -0.18 -2.45 10.25 -26.73 -0.27 -2.73 16 15 S 2.61 49.78 5.02 -107.50 -0.54 49.24 16 16 O -0.97 -18.25 14.74 -57.54 -0.85 -19.09 16 17 O -0.96 -22.06 16.53 -57.54 -0.95 -23.01 16 18 C -0.63 -9.89 5.62 37.16 0.21 -9.68 16 19 C -0.07 -1.03 2.19 -90.62 -0.20 -1.23 16 20 C -0.14 -1.87 4.89 -26.73 -0.13 -2.00 16 21 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 22 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 23 C -0.12 -1.25 5.92 -26.76 -0.16 -1.40 16 24 C -0.11 -1.27 5.20 -26.76 -0.14 -1.41 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.04 1.03 8.11 -51.93 -0.42 0.61 16 27 H 0.05 1.46 6.81 -51.93 -0.35 1.10 16 28 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 29 H 0.07 0.99 7.34 -51.93 -0.38 0.61 16 30 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 31 H 0.10 1.36 8.03 -51.93 -0.42 0.94 16 32 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.14 2.37 8.14 -51.92 -0.42 1.95 16 36 H 0.12 1.68 8.14 -51.93 -0.42 1.25 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.20 5.61 -51.93 -0.29 0.91 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 381.44 15.07 5.75 5.75 Total: -1.00 -30.38 381.44 -12.08 -42.46 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -8.59 Total: 5.04 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: -2.30 Total: -31.13 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.42 Total: -44.67 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -1.80 Total: -42.10 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 49.78 SS G_CDS: -0.54 Total: 49.24 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.38 -12.08 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078697207.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.795 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds