Wall clock time and date at job start Tue Mar 31 2020 10:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99634 * 2 1 4 4 H 1.48493 * 109.47249 * 269.99772 * 3 2 1 5 5 H 1.48501 * 109.46903 * 30.00224 * 3 2 1 6 6 H 1.48507 * 109.46998 * 149.99715 * 3 2 1 7 7 C 1.37869 * 120.00571 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00359 * 180.02562 * 7 2 1 9 9 C 1.50710 * 119.99779 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.46936 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99963 * 275.00230 * 10 9 7 12 12 C 1.53009 * 109.46824 * 275.00260 * 11 10 9 13 13 C 1.52992 * 117.49697 * 243.62292 * 12 11 10 14 14 C 1.53001 * 60.00191 * 252.51101 * 13 12 11 15 15 S 1.65596 * 120.00005 * 95.00021 * 10 9 7 16 16 O 1.42105 * 104.27666 * 153.92608 * 15 10 9 17 17 O 1.42105 * 104.27792 * 26.07376 * 15 10 9 18 18 C 1.81389 * 104.45192 * 269.99772 * 15 10 9 19 19 C 1.53002 * 109.47346 * 179.97438 * 18 15 10 20 20 C 1.52997 * 109.46817 * 64.99991 * 19 18 15 21 21 C 1.52999 * 109.47317 * 179.97438 * 20 19 18 22 22 C 1.53005 * 109.47159 * 300.00546 * 21 20 19 23 23 C 1.52997 * 109.47452 * 59.99536 * 22 21 20 24 24 C 1.53000 * 109.47233 * 184.99797 * 19 18 15 25 25 H 0.96999 * 120.00255 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46948 * 60.00098 * 9 7 2 27 27 H 1.09000 * 109.47144 * 299.99992 * 9 7 2 28 28 H 1.09002 * 109.47176 * 34.99727 * 11 10 9 29 29 H 1.09000 * 109.47479 * 155.00573 * 11 10 9 30 30 H 1.09000 * 115.55091 * 29.32509 * 12 11 10 31 31 H 1.09004 * 117.50440 * 0.02562 * 13 12 11 32 32 H 1.09001 * 117.50438 * 145.02203 * 13 12 11 33 33 H 1.09003 * 117.49631 * 252.51410 * 14 13 12 34 34 H 1.09000 * 117.50031 * 107.48635 * 14 13 12 35 35 H 1.09008 * 109.47130 * 60.00011 * 18 15 10 36 36 H 1.08997 * 109.47306 * 300.00006 * 18 15 10 37 37 H 1.09002 * 109.47070 * 305.00171 * 19 18 15 38 38 H 1.08996 * 109.47853 * 300.00202 * 20 19 18 39 39 H 1.09002 * 109.47153 * 60.00231 * 20 19 18 40 40 H 1.09000 * 109.47486 * 180.02562 * 21 20 19 41 41 H 1.09002 * 109.46716 * 60.00091 * 21 20 19 42 42 H 1.09002 * 109.46935 * 299.99411 * 22 21 20 43 43 H 1.09001 * 109.46812 * 179.97438 * 22 21 20 44 44 H 1.08993 * 109.47194 * 179.97438 * 23 22 21 45 45 H 1.09002 * 109.46695 * 59.99734 * 23 22 21 46 46 H 1.08992 * 109.47399 * 300.00166 * 24 19 18 47 47 H 1.09004 * 109.46724 * 60.00652 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.7634 -4.0974 -1.2644 12 6 1.8036 -5.1102 -1.8924 13 6 2.3001 -6.5485 -2.0524 14 6 2.1540 -5.6484 -3.2811 15 16 2.6464 -4.3231 1.4281 16 8 3.0190 -5.6445 1.0615 17 8 1.5447 -4.0862 2.2939 18 6 4.0974 -3.3802 1.9717 19 6 4.6063 -3.9470 3.2986 20 6 5.1094 -5.3758 3.0833 21 6 5.6188 -5.9425 4.4100 22 6 6.7640 -5.0715 4.9305 23 6 6.2609 -3.6427 5.1459 24 6 5.7513 -3.0762 3.8196 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.9026 -3.2581 -1.9458 29 1 3.7244 -4.5760 -1.0762 30 1 0.7486 -4.9645 -1.6604 31 1 3.3102 -6.7734 -1.7101 32 1 1.5717 -7.3495 -1.9258 33 1 1.3294 -5.8572 -3.9627 34 1 3.0681 -5.2810 -3.7473 35 1 3.8216 -2.3341 2.1058 36 1 4.8824 -3.4554 1.2193 37 1 3.7946 -3.9534 4.0261 38 1 4.2938 -5.9963 2.7121 39 1 5.9211 -5.3694 2.3558 40 1 5.9777 -6.9602 4.2565 41 1 4.8074 -5.9488 5.1378 42 1 7.5754 -5.0651 4.2027 43 1 7.1266 -5.4750 5.8759 44 1 7.0766 -3.0224 5.5171 45 1 5.4495 -3.6491 5.8736 46 1 6.5629 -3.0698 3.0922 47 1 5.3928 -2.0583 3.9731 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078697207.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:58 Heat of formation + Delta-G solvation = -95.025689 kcal Electronic energy + Delta-G solvation = -25971.922221 eV Core-core repulsion = 22473.637307 eV Total energy + Delta-G solvation = -3498.284913 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.67453 -38.85221 -38.06175 -36.88534 -36.39313 -34.36767 -33.79637 -31.66476 -29.63179 -27.85477 -27.01390 -24.38692 -23.56465 -23.10734 -22.46880 -21.54386 -20.72410 -19.69407 -18.60698 -18.47507 -17.47030 -17.19224 -16.52682 -16.32664 -16.03473 -15.52859 -15.30274 -15.07979 -15.00200 -14.89458 -14.40331 -13.98168 -13.89319 -13.50135 -13.43077 -13.23759 -13.11759 -12.92791 -12.87148 -12.84706 -12.75004 -12.48308 -12.34166 -12.26269 -12.09027 -12.01713 -11.93664 -11.88453 -11.68727 -11.38745 -11.19712 -11.04706 -10.83195 -10.67959 -10.57230 -9.68023 -8.17243 -6.33009 -0.56149 1.43408 1.44071 1.54114 1.82948 2.41668 2.94931 3.00157 3.14039 3.27165 3.47537 3.67250 3.77090 3.90278 4.00105 4.09346 4.12591 4.24394 4.30269 4.36670 4.39661 4.45530 4.46071 4.57578 4.62071 4.75972 4.81177 4.84070 4.89736 4.97505 5.05998 5.10693 5.15342 5.19762 5.24202 5.27188 5.30191 5.34089 5.35508 5.37754 5.40200 5.51772 5.55652 5.75860 5.95974 6.08889 6.80312 7.38133 8.90926 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.009731 B = 0.005868 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.582289 B = 4770.135321 C = 6906.731818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.257 1.257 7 C -0.549 4.549 8 H 0.078 0.922 9 C 0.260 3.740 10 N -0.990 5.990 11 C 0.160 3.840 12 C -0.196 4.196 13 C -0.168 4.168 14 C -0.158 4.158 15 S 2.604 3.396 16 O -0.969 6.969 17 O -1.009 7.009 18 C -0.607 4.607 19 C -0.080 4.080 20 C -0.147 4.147 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.106 4.106 25 H 0.266 0.734 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.134 0.866 36 H 0.154 0.846 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.191 -9.453 3.147 18.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.190 4.190 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.181 1.181 7 C -0.589 4.589 8 H 0.096 0.904 9 C 0.136 3.864 10 N -0.826 5.826 11 C 0.035 3.965 12 C -0.216 4.216 13 C -0.205 4.205 14 C -0.195 4.195 15 S 2.702 3.298 16 O -0.960 6.960 17 O -1.000 7.000 18 C -0.740 4.740 19 C -0.100 4.100 20 C -0.185 4.185 21 C -0.158 4.158 22 C -0.154 4.154 23 C -0.160 4.160 24 C -0.144 4.144 25 H 0.074 0.926 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.152 0.848 36 H 0.172 0.828 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.096 0.904 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.559 -10.081 3.524 18.055 hybrid contribution -0.292 1.626 -0.186 1.662 sum 14.267 -8.455 3.338 16.917 Atomic orbital electron populations 1.70082 1.07895 1.28091 1.50819 1.25879 0.95575 1.03072 0.94508 0.85516 0.78875 0.78552 0.78549 1.19711 1.21344 1.18124 1.21933 0.94291 0.91202 1.51428 0.90431 1.18699 0.87785 0.83101 0.96820 1.57240 1.57134 1.47951 1.20281 1.20813 0.94761 0.96021 0.84925 1.22748 0.99827 0.96994 1.02057 1.23023 1.02898 0.92564 1.02034 1.23037 1.03989 1.02630 0.89893 1.04874 0.76670 0.74989 0.73253 1.93500 1.85233 1.34986 1.82232 1.93496 1.51761 1.86937 1.67763 1.30585 1.19693 1.15222 1.08470 1.21006 0.99719 0.96608 0.92666 1.22083 1.02391 0.94134 0.99892 1.21558 0.98798 0.99809 0.95648 1.21559 0.97566 0.94533 1.01773 1.21589 1.01095 0.96903 0.96403 1.21545 0.96683 0.98090 0.98096 0.92551 0.96586 0.96634 0.90028 0.88985 0.90294 0.87918 0.89164 0.88099 0.87026 0.84768 0.82814 0.91410 0.91970 0.89632 0.90427 0.92309 0.91096 0.90598 0.90266 0.92286 0.90362 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.54 13.29 21.44 0.28 -54.26 16 2 C 0.01 0.50 5.46 84.65 0.46 0.96 16 3 Si 0.96 41.64 29.54 68.60 2.03 43.66 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.55 -28.67 9.38 25.60 0.24 -28.43 16 8 H 0.08 3.70 7.81 -2.91 -0.02 3.68 16 9 C 0.26 13.45 5.41 85.64 0.46 13.91 16 10 N -0.99 -41.14 2.70 -519.80 -1.40 -42.55 16 11 C 0.16 5.50 5.54 86.38 0.48 5.98 16 12 C -0.20 -6.49 6.01 -10.79 -0.06 -6.56 16 13 C -0.17 -4.66 10.18 30.59 0.31 -4.34 16 14 C -0.16 -3.94 10.25 30.59 0.31 -3.62 16 15 S 2.60 101.54 5.02 -56.49 -0.28 101.26 16 16 O -0.97 -36.53 14.74 -127.65 -1.88 -38.41 16 17 O -1.01 -49.20 16.53 -127.65 -2.11 -51.31 16 18 C -0.61 -18.34 5.62 71.98 0.40 -17.94 16 19 C -0.08 -2.12 2.19 -10.79 -0.02 -2.14 16 20 C -0.15 -3.55 4.89 30.59 0.15 -3.40 16 21 C -0.12 -2.34 5.92 30.60 0.18 -2.16 16 22 C -0.12 -1.86 5.92 30.60 0.18 -1.67 16 23 C -0.12 -2.15 5.92 30.58 0.18 -1.97 16 24 C -0.11 -2.26 5.20 30.58 0.16 -2.10 16 25 H 0.27 14.71 8.31 -92.71 -0.77 13.93 16 26 H 0.02 0.89 8.11 -2.39 -0.02 0.87 16 27 H 0.02 0.92 6.81 -2.39 -0.02 0.90 16 28 H 0.08 2.79 8.11 -2.39 -0.02 2.77 16 29 H 0.09 2.61 7.34 -2.39 -0.02 2.59 16 30 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.10 2.70 8.03 -2.38 -0.02 2.68 16 32 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.13 4.37 8.14 -2.39 -0.02 4.35 16 36 H 0.15 3.71 8.14 -2.39 -0.02 3.69 16 37 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.06 1.75 5.61 -2.39 -0.01 1.74 16 39 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -67.91 381.44 0.98 -66.92 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.91 Total: 28.17 kcal Atomic # 6 Polarization: -56.93 SS G_CDS: 3.44 Total: -53.49 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -1.12 Total: -96.81 kcal Atomic # 8 Polarization: -85.72 SS G_CDS: -3.99 Total: -89.71 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: 101.54 SS G_CDS: -0.28 Total: 101.26 kcal Total: -67.91 0.98 -66.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078697207.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.103 kcal (2) G-P(sol) polarization free energy of solvation -67.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds