Wall clock time and date at job start Tue Mar 31 2020 10:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00430 * 2 1 4 4 H 1.48500 * 109.46870 * 269.99773 * 3 2 1 5 5 H 1.48496 * 109.47493 * 29.99562 * 3 2 1 6 6 H 1.48503 * 109.47205 * 150.00138 * 3 2 1 7 7 C 1.37881 * 119.99484 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99794 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99901 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47262 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47491 * 180.02562 * 10 9 7 12 12 S 1.81397 * 109.47413 * 179.97438 * 11 10 9 13 13 O 1.42103 * 110.54147 * 68.37231 * 12 11 10 14 14 O 1.42103 * 110.53987 * 291.62658 * 12 11 10 15 15 N 1.65592 * 104.44932 * 179.97438 * 12 11 10 16 16 C 1.46505 * 120.00362 * 65.00210 * 15 12 11 17 17 C 1.52990 * 109.47335 * 164.99963 * 16 15 12 18 18 C 1.50703 * 109.47138 * 179.97438 * 17 16 15 19 19 C 1.29524 * 119.82032 * 95.00101 * 18 17 16 20 20 C 1.51374 * 120.35983 * 180.02562 * 19 18 17 21 21 C 1.53034 * 108.76147 * 287.98647 * 20 19 18 22 22 C 1.52105 * 110.63054 * 85.53858 * 21 20 19 23 23 C 1.51844 * 113.79396 * 293.72517 * 22 21 20 24 24 C 1.51372 * 119.81915 * 274.97541 * 18 17 16 25 25 H 0.97005 * 119.99298 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47447 * 60.00440 * 9 7 2 27 27 H 1.08998 * 109.47400 * 300.00113 * 9 7 2 28 28 H 1.09003 * 109.47191 * 59.99852 * 10 9 7 29 29 H 1.09008 * 109.46746 * 300.00134 * 10 9 7 30 30 H 1.09003 * 109.47059 * 59.99728 * 11 10 9 31 31 H 1.08997 * 109.46788 * 299.99666 * 11 10 9 32 32 H 0.96999 * 120.00371 * 244.99701 * 15 12 11 33 33 H 1.09000 * 109.46668 * 44.99473 * 16 15 12 34 34 H 1.09003 * 109.46615 * 284.99657 * 16 15 12 35 35 H 1.09000 * 109.47643 * 60.00106 * 17 16 15 36 36 H 1.09003 * 109.47019 * 299.99446 * 17 16 15 37 37 H 1.08002 * 119.82307 * 359.97438 * 19 18 17 38 38 H 1.09002 * 109.61505 * 47.81365 * 20 19 18 39 39 H 1.09004 * 109.61368 * 168.16138 * 20 19 18 40 40 H 1.08992 * 109.22153 * 206.15156 * 21 20 19 41 41 H 1.09005 * 109.22088 * 325.49706 * 21 20 19 42 42 H 1.08995 * 108.61101 * 172.57446 * 22 21 20 43 43 H 1.09001 * 108.52813 * 54.81109 * 22 21 20 44 44 H 1.09003 * 109.22251 * 306.14457 * 23 22 21 45 45 H 1.09000 * 109.19059 * 186.77614 * 23 22 21 46 46 H 1.09001 * 109.61180 * 11.66011 * 24 18 17 47 47 H 1.09002 * 109.60990 * 132.00401 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4643 -2.1294 0.0005 9 6 3.5114 -1.1943 0.0011 10 6 4.0213 -2.6368 0.0010 11 6 5.5513 -2.6370 0.0022 12 16 6.1559 -4.3472 0.0028 13 8 5.8606 -4.9809 -1.2343 14 8 5.8586 -4.9807 1.2397 15 7 7.8054 -4.2024 0.0035 16 6 8.4879 -3.6039 1.1535 17 6 9.9829 -3.9205 1.0807 18 6 10.6850 -3.3044 2.2634 19 6 10.9007 -4.0136 3.3255 20 6 11.6042 -3.4069 4.5207 21 6 13.0839 -3.2194 4.1779 22 6 13.3045 -1.8958 3.4616 23 6 12.6599 -1.8274 2.0885 24 6 11.1347 -1.8603 2.2032 25 1 -0.4849 0.8401 -0.0004 26 1 3.8744 -0.6803 0.8911 27 1 3.8751 -0.6806 -0.8888 28 1 3.6583 -3.1504 -0.8892 29 1 3.6575 -3.1508 0.8908 30 1 5.9140 -2.1234 0.8927 31 1 5.9153 -2.1229 -0.8873 32 1 8.3200 -4.5138 -0.7576 33 1 8.0741 -4.0135 2.0749 34 1 8.3442 -2.5235 1.1393 35 1 10.3967 -3.5109 0.1593 36 1 10.1266 -5.0010 1.0949 37 1 10.5761 -5.0431 3.3591 38 1 11.1580 -2.4407 4.7564 39 1 11.5089 -4.0729 5.3783 40 1 13.6702 -3.2384 5.0965 41 1 13.4079 -4.0334 3.5292 42 1 14.3768 -1.7343 3.3517 43 1 12.8959 -1.0957 4.0788 44 1 12.9932 -2.6773 1.4928 45 1 12.9629 -0.9034 1.5961 46 1 10.6917 -1.3751 1.3335 47 1 10.8226 -1.3419 3.1099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186034411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:00 Heat of formation + Delta-G solvation = -98.348968 kcal Electronic energy + Delta-G solvation = -24034.124378 eV Core-core repulsion = 20535.695357 eV Total energy + Delta-G solvation = -3498.429022 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.33987 -36.98499 -36.26014 -35.77552 -34.81249 -33.46893 -32.26613 -32.21653 -29.12579 -28.38050 -25.55792 -24.27310 -23.61926 -22.60535 -20.70817 -20.52042 -19.32142 -17.97669 -17.42437 -16.91860 -16.54210 -16.12509 -15.89764 -15.79291 -15.11850 -14.70987 -14.24440 -14.19586 -14.14102 -13.90781 -13.44555 -13.27125 -12.92666 -12.72584 -12.38276 -12.28540 -12.13761 -12.05006 -11.93119 -11.86297 -11.77367 -11.56551 -11.41983 -11.07833 -11.03435 -10.98948 -10.95234 -10.89635 -10.64196 -10.09653 -9.92975 -9.82159 -9.41152 -9.25874 -9.06476 -8.59095 -6.08716 -4.07922 0.39848 1.91321 2.80806 3.26164 3.33705 3.35695 3.89206 4.22293 4.33351 4.39956 4.42305 4.49493 4.62931 4.67273 4.70314 4.85008 4.91454 5.00174 5.08249 5.08522 5.16109 5.24849 5.26107 5.31994 5.40133 5.46432 5.48538 5.55705 5.65267 5.74388 5.74791 5.76161 5.81460 5.86474 5.87349 6.01214 6.14100 6.26387 6.37255 6.66688 6.67141 6.84490 7.12281 7.26318 7.70801 8.47445 8.95840 9.52384 11.04595 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014104 B = 0.002724 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.824936 B =10277.635868 C =11605.326779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.098 4.098 11 C -0.616 4.616 12 S 2.604 3.396 13 O -0.962 6.962 14 O -0.960 6.960 15 N -1.126 6.126 16 C 0.118 3.882 17 C -0.088 4.088 18 C -0.125 4.125 19 C -0.151 4.151 20 C -0.092 4.092 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.112 4.112 24 C -0.086 4.086 25 H 0.264 0.736 26 H 0.020 0.980 27 H 0.015 0.985 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.414 0.586 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.679 -5.050 5.534 30.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.137 4.137 11 C -0.747 4.747 12 S 2.699 3.301 13 O -0.952 6.952 14 O -0.950 6.950 15 N -0.884 5.884 16 C -0.008 4.008 17 C -0.127 4.127 18 C -0.125 4.125 19 C -0.169 4.169 20 C -0.129 4.129 21 C -0.151 4.151 22 C -0.157 4.157 23 C -0.150 4.150 24 C -0.124 4.124 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.034 0.966 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.248 0.752 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.127 0.873 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 28.958 -5.703 5.706 30.061 hybrid contribution 0.714 1.513 -0.373 1.714 sum 29.672 -4.190 5.333 30.437 Atomic orbital electron populations 1.69915 1.06284 1.26968 1.50708 1.25032 0.94768 0.99183 0.94476 0.86768 0.80314 0.83607 0.78518 1.20235 1.21272 1.19061 1.21136 0.89258 0.94774 1.51313 0.90723 1.19529 0.97332 0.90748 0.96703 1.21315 0.86643 1.02932 1.02826 1.30595 1.09506 1.23470 1.11132 1.05189 0.72694 0.77956 0.74247 1.93586 1.82789 1.73686 1.45158 1.93576 1.82956 1.72784 1.45668 1.55733 1.26567 1.78402 1.27738 1.21287 0.92968 0.97848 0.88684 1.20814 0.93384 1.01177 0.97287 1.21161 0.99710 0.96172 0.95491 1.22467 0.99805 0.99737 0.94936 1.20815 0.94891 1.00968 0.96231 1.21313 0.95805 0.97793 1.00151 1.21207 1.00401 0.97717 0.96395 1.21251 0.94680 1.01954 0.97113 1.20812 0.95564 0.93322 1.02668 0.92629 0.96185 0.96628 0.90967 0.90950 0.85537 0.85283 0.75198 0.90024 0.91607 0.90541 0.90562 0.87306 0.90986 0.91506 0.91929 0.91932 0.92472 0.92280 0.91864 0.91842 0.91251 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.53 -15.02 9.66 -34.44 -0.33 -15.35 16 8 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 9 C 0.00 -0.11 4.04 -27.88 -0.11 -0.22 16 10 C -0.10 -1.90 5.16 -26.73 -0.14 -2.04 16 11 C -0.62 -8.76 6.07 37.16 0.23 -8.53 16 12 S 2.60 36.45 5.46 -107.50 -0.59 35.86 16 13 O -0.96 -16.40 18.08 -57.54 -1.04 -17.44 16 14 O -0.96 -16.49 17.50 -57.54 -1.01 -17.49 16 15 N -1.13 -11.10 5.89 -10.61 -0.06 -11.17 16 16 C 0.12 1.04 6.11 -4.04 -0.02 1.02 16 17 C -0.09 -0.63 5.44 -27.89 -0.15 -0.78 16 18 C -0.12 -0.91 4.41 -100.32 -0.44 -1.35 16 19 C -0.15 -1.12 8.93 -35.28 -0.31 -1.43 16 20 C -0.09 -0.60 5.60 -27.53 -0.15 -0.75 16 21 C -0.11 -0.66 5.70 -27.17 -0.15 -0.81 16 22 C -0.12 -0.68 5.29 -27.77 -0.15 -0.82 16 23 C -0.11 -0.67 5.67 -27.32 -0.15 -0.83 16 24 C -0.09 -0.57 5.47 -27.56 -0.15 -0.72 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 27 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 28 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 30 H 0.13 1.55 8.14 -51.92 -0.42 1.13 16 31 H 0.13 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.41 3.28 8.62 -34.47 -0.30 2.99 16 33 H 0.08 0.80 7.70 -51.93 -0.40 0.40 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.54 7.96 -51.93 -0.41 0.13 16 37 H 0.11 0.80 7.95 -52.49 -0.42 0.38 16 38 H 0.07 0.48 6.69 -51.93 -0.35 0.13 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.39 7.86 -51.93 -0.41 -0.02 16 42 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 44 H 0.06 0.40 7.86 -51.93 -0.41 -0.01 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.44 8.03 -51.93 -0.42 0.02 16 47 H 0.07 0.50 6.70 -51.93 -0.35 0.15 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -35.23 381.87 -11.43 -46.67 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -8.45 Total: -1.18 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: -2.15 Total: -30.77 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.71 Total: -38.13 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -2.05 Total: -34.93 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 16 Polarization: 36.45 SS G_CDS: -0.59 Total: 35.86 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.23 -11.43 -46.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186034411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.684 kcal (2) G-P(sol) polarization free energy of solvation -35.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds