Wall clock time and date at job start Tue Mar 31 2020 10:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00430 * 2 1 4 4 H 1.48500 * 109.46870 * 269.99773 * 3 2 1 5 5 H 1.48496 * 109.47493 * 29.99562 * 3 2 1 6 6 H 1.48503 * 109.47205 * 150.00138 * 3 2 1 7 7 C 1.37881 * 119.99484 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99794 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99901 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47262 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47491 * 180.02562 * 10 9 7 12 12 S 1.81397 * 109.47413 * 179.97438 * 11 10 9 13 13 O 1.42103 * 110.54147 * 68.37231 * 12 11 10 14 14 O 1.42103 * 110.53987 * 291.62658 * 12 11 10 15 15 N 1.65592 * 104.44932 * 179.97438 * 12 11 10 16 16 C 1.46505 * 120.00362 * 65.00210 * 15 12 11 17 17 C 1.52990 * 109.47335 * 164.99963 * 16 15 12 18 18 C 1.50703 * 109.47138 * 179.97438 * 17 16 15 19 19 C 1.29524 * 119.82032 * 95.00101 * 18 17 16 20 20 C 1.51374 * 120.35983 * 180.02562 * 19 18 17 21 21 C 1.53034 * 108.76147 * 287.98647 * 20 19 18 22 22 C 1.52105 * 110.63054 * 85.53858 * 21 20 19 23 23 C 1.51844 * 113.79396 * 293.72517 * 22 21 20 24 24 C 1.51372 * 119.81915 * 274.97541 * 18 17 16 25 25 H 0.97005 * 119.99298 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47447 * 60.00440 * 9 7 2 27 27 H 1.08998 * 109.47400 * 300.00113 * 9 7 2 28 28 H 1.09003 * 109.47191 * 59.99852 * 10 9 7 29 29 H 1.09008 * 109.46746 * 300.00134 * 10 9 7 30 30 H 1.09003 * 109.47059 * 59.99728 * 11 10 9 31 31 H 1.08997 * 109.46788 * 299.99666 * 11 10 9 32 32 H 0.96999 * 120.00371 * 244.99701 * 15 12 11 33 33 H 1.09000 * 109.46668 * 44.99473 * 16 15 12 34 34 H 1.09003 * 109.46615 * 284.99657 * 16 15 12 35 35 H 1.09000 * 109.47643 * 60.00106 * 17 16 15 36 36 H 1.09003 * 109.47019 * 299.99446 * 17 16 15 37 37 H 1.08002 * 119.82307 * 359.97438 * 19 18 17 38 38 H 1.09002 * 109.61505 * 47.81365 * 20 19 18 39 39 H 1.09004 * 109.61368 * 168.16138 * 20 19 18 40 40 H 1.08992 * 109.22153 * 206.15156 * 21 20 19 41 41 H 1.09005 * 109.22088 * 325.49706 * 21 20 19 42 42 H 1.08995 * 108.61101 * 172.57446 * 22 21 20 43 43 H 1.09001 * 108.52813 * 54.81109 * 22 21 20 44 44 H 1.09003 * 109.22251 * 306.14457 * 23 22 21 45 45 H 1.09000 * 109.19059 * 186.77614 * 23 22 21 46 46 H 1.09001 * 109.61180 * 11.66011 * 24 18 17 47 47 H 1.09002 * 109.60990 * 132.00401 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6527 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4643 -2.1294 0.0005 9 6 3.5114 -1.1943 0.0011 10 6 4.0213 -2.6368 0.0010 11 6 5.5513 -2.6370 0.0022 12 16 6.1559 -4.3472 0.0028 13 8 5.8606 -4.9809 -1.2343 14 8 5.8586 -4.9807 1.2397 15 7 7.8054 -4.2024 0.0035 16 6 8.4879 -3.6039 1.1535 17 6 9.9829 -3.9205 1.0807 18 6 10.6850 -3.3044 2.2634 19 6 10.9007 -4.0136 3.3255 20 6 11.6042 -3.4069 4.5207 21 6 13.0839 -3.2194 4.1779 22 6 13.3045 -1.8958 3.4616 23 6 12.6599 -1.8274 2.0885 24 6 11.1347 -1.8603 2.2032 25 1 -0.4849 0.8401 -0.0004 26 1 3.8744 -0.6803 0.8911 27 1 3.8751 -0.6806 -0.8888 28 1 3.6583 -3.1504 -0.8892 29 1 3.6575 -3.1508 0.8908 30 1 5.9140 -2.1234 0.8927 31 1 5.9153 -2.1229 -0.8873 32 1 8.3200 -4.5138 -0.7576 33 1 8.0741 -4.0135 2.0749 34 1 8.3442 -2.5235 1.1393 35 1 10.3967 -3.5109 0.1593 36 1 10.1266 -5.0010 1.0949 37 1 10.5761 -5.0431 3.3591 38 1 11.1580 -2.4407 4.7564 39 1 11.5089 -4.0729 5.3783 40 1 13.6702 -3.2384 5.0965 41 1 13.4079 -4.0334 3.5292 42 1 14.3768 -1.7343 3.3517 43 1 12.8959 -1.0957 4.0788 44 1 12.9932 -2.6773 1.4928 45 1 12.9629 -0.9034 1.5961 46 1 10.6917 -1.3751 1.3335 47 1 10.8226 -1.3419 3.1099 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186034411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:59 Heat of formation + Delta-G solvation = -121.975506 kcal Electronic energy + Delta-G solvation = -24035.148902 eV Core-core repulsion = 20535.695357 eV Total energy + Delta-G solvation = -3499.453545 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.84156 -38.20522 -37.10947 -36.88865 -36.50235 -34.24794 -34.06576 -32.74062 -30.15588 -29.73477 -26.07974 -25.39317 -24.81776 -23.19135 -22.24596 -21.15644 -20.40121 -18.98503 -18.75206 -18.24505 -17.51733 -17.24009 -16.61909 -16.41679 -16.28077 -16.11787 -15.55475 -15.25478 -14.86319 -14.66610 -14.38762 -14.08187 -13.98184 -13.77247 -13.66825 -13.38631 -13.24415 -13.19091 -13.13404 -13.04445 -12.69324 -12.55896 -12.52512 -12.48654 -11.99742 -11.84258 -11.64190 -11.53826 -11.48351 -11.41521 -11.38206 -11.27756 -11.12265 -10.77540 -10.36849 -9.60866 -8.29918 -6.35931 -0.73385 1.35509 1.36938 1.39702 1.51336 1.82913 2.36551 2.77220 3.05221 3.24614 3.67501 3.75784 3.90375 3.94541 4.03590 4.04759 4.17175 4.21669 4.33662 4.36757 4.37006 4.57285 4.58545 4.63684 4.72039 4.74680 4.85101 4.86406 4.95774 4.96731 5.00784 5.04716 5.14825 5.24075 5.30919 5.32574 5.34343 5.36943 5.39442 5.46169 5.56440 5.62628 5.84529 6.12166 6.15737 6.25258 6.72396 7.28665 8.87116 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014104 B = 0.002724 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.824936 B =10277.635868 C =11605.326779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.001 4.001 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.237 1.237 7 C -0.544 4.544 8 H 0.029 0.971 9 C -0.005 4.005 10 C -0.105 4.105 11 C -0.609 4.609 12 S 2.625 3.375 13 O -0.995 6.995 14 O -0.995 6.995 15 N -1.109 6.109 16 C 0.110 3.890 17 C -0.084 4.084 18 C -0.126 4.126 19 C -0.161 4.161 20 C -0.092 4.092 21 C -0.111 4.111 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.087 4.087 25 H 0.267 0.733 26 H 0.033 0.967 27 H 0.031 0.969 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.426 0.574 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.075 0.925 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.920 -3.232 5.443 33.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.197 4.197 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.160 1.160 7 C -0.582 4.582 8 H 0.047 0.953 9 C -0.044 4.044 10 C -0.144 4.144 11 C -0.740 4.740 12 S 2.721 3.279 13 O -0.986 6.986 14 O -0.985 6.985 15 N -0.871 5.871 16 C -0.016 4.016 17 C -0.123 4.123 18 C -0.127 4.127 19 C -0.180 4.180 20 C -0.129 4.129 21 C -0.149 4.149 22 C -0.158 4.158 23 C -0.148 4.148 24 C -0.124 4.124 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.172 0.828 31 H 0.176 0.824 32 H 0.263 0.737 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.094 0.906 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 32.218 -3.917 5.608 32.936 hybrid contribution -0.322 0.852 -0.322 0.966 sum 31.896 -3.065 5.286 32.476 Atomic orbital electron populations 1.70092 1.08556 1.28310 1.52361 1.26141 0.95726 1.03979 0.93892 0.85571 0.79708 0.77465 0.79377 1.18955 1.21174 1.16024 1.21565 0.92424 0.93253 1.50999 0.95291 1.19507 0.93631 0.93479 0.97755 1.21186 0.90637 1.00457 1.02125 1.30496 1.05363 1.24188 1.13994 1.04282 0.73454 0.77506 0.72690 1.93538 1.83939 1.74693 1.46395 1.93534 1.84101 1.73819 1.47069 1.55283 1.24762 1.78381 1.28658 1.21509 0.93684 0.98876 0.87506 1.20792 0.92219 1.01263 0.98006 1.21249 0.99553 0.96598 0.95328 1.22583 1.00146 0.99756 0.95474 1.20829 0.95260 1.00852 0.95995 1.21298 0.95372 0.97784 1.00407 1.21214 1.00753 0.97507 0.96297 1.21239 0.94294 1.02111 0.97194 1.20843 0.95975 0.92743 1.02869 0.92444 0.94880 0.95032 0.91916 0.91955 0.82816 0.82443 0.73720 0.91251 0.89562 0.88994 0.90743 0.87755 0.91089 0.91362 0.91268 0.92452 0.91950 0.92215 0.92266 0.91169 0.90597 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 2 C 0.00 -0.05 5.47 84.66 0.46 0.42 16 3 Si 0.96 43.06 27.47 68.60 1.88 44.94 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.24 -9.52 6.54 99.48 0.65 -8.87 16 7 C -0.54 -31.62 9.66 25.60 0.25 -31.38 16 8 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 9 C -0.01 -0.23 4.04 29.85 0.12 -0.11 16 10 C -0.10 -3.99 5.16 30.59 0.16 -3.83 16 11 C -0.61 -15.54 6.07 71.98 0.44 -15.11 16 12 S 2.62 69.63 5.46 -56.49 -0.31 69.32 16 13 O -1.00 -33.12 18.08 -127.65 -2.31 -35.43 16 14 O -1.00 -33.66 17.50 -127.65 -2.23 -35.89 16 15 N -1.11 -19.04 5.89 -187.49 -1.10 -20.14 16 16 C 0.11 1.63 6.11 86.38 0.53 2.16 16 17 C -0.08 -0.99 5.44 29.85 0.16 -0.83 16 18 C -0.13 -1.58 4.41 -14.76 -0.07 -1.65 16 19 C -0.16 -2.18 8.93 27.37 0.24 -1.93 16 20 C -0.09 -1.08 5.60 30.07 0.17 -0.91 16 21 C -0.11 -1.13 5.70 30.31 0.17 -0.96 16 22 C -0.12 -1.14 5.29 29.92 0.16 -0.98 16 23 C -0.11 -1.08 5.67 30.21 0.17 -0.91 16 24 C -0.09 -0.94 5.47 30.06 0.16 -0.77 16 25 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 26 H 0.03 1.40 7.20 -2.39 -0.02 1.39 16 27 H 0.03 1.32 7.57 -2.39 -0.02 1.30 16 28 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 30 H 0.15 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.16 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.43 5.58 8.62 -96.75 -0.83 4.75 16 33 H 0.07 1.23 7.70 -2.39 -0.02 1.21 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.91 7.96 -2.39 -0.02 0.89 16 37 H 0.10 1.46 7.95 -2.91 -0.02 1.44 16 38 H 0.07 0.84 6.69 -2.39 -0.02 0.83 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.06 0.64 7.86 -2.38 -0.02 0.62 16 42 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.06 0.56 7.90 -2.39 -0.02 0.54 16 44 H 0.06 0.63 7.86 -2.39 -0.02 0.61 16 45 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.08 0.72 8.03 -2.39 -0.02 0.70 16 47 H 0.07 0.81 6.70 -2.39 -0.02 0.80 16 Total: -1.00 -77.89 381.87 -0.60 -78.48 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.04 Total: 15.50 kcal Atomic # 6 Polarization: -59.92 SS G_CDS: 3.13 Total: -56.79 kcal Atomic # 7 Polarization: -79.34 SS G_CDS: -0.80 Total: -80.14 kcal Atomic # 8 Polarization: -66.78 SS G_CDS: -4.54 Total: -71.32 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.94 kcal Atomic # 16 Polarization: 69.63 SS G_CDS: -0.31 Total: 69.32 kcal Total: -77.89 -0.60 -78.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186034411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.491 kcal (2) G-P(sol) polarization free energy of solvation -77.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds