Wall clock time and date at job start Tue Mar 31 2020 11:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86793 * 120.00181 * 2 1 4 4 H 1.48504 * 109.47165 * 239.99822 * 3 2 1 5 5 H 1.48504 * 109.47452 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47073 * 120.00247 * 3 2 1 7 7 C 1.38802 * 119.99658 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99739 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00025 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99956 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46896 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46803 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.46998 * 179.97438 * 12 11 10 14 14 C 1.46900 * 110.99792 * 173.30602 * 13 12 11 15 15 H 1.08992 * 109.47134 * 336.29528 * 14 13 12 16 16 C 1.52998 * 109.46980 * 96.29490 * 14 13 12 17 17 C 1.53003 * 117.49717 * 1.68025 * 16 14 13 18 18 C 1.53002 * 117.49972 * 293.02554 * 16 14 13 19 19 C 1.53007 * 109.47015 * 216.29176 * 14 13 12 20 20 C 1.53001 * 109.82012 * 180.56837 * 19 14 13 21 21 O 1.42895 * 109.46900 * 184.99897 * 20 19 14 22 22 C 1.54383 * 109.82788 * 59.58890 * 19 14 13 23 23 C 1.55305 * 102.25115 * 219.12912 * 22 19 14 24 24 C 1.54942 * 100.94164 * 34.13484 * 23 22 19 25 25 O 1.43238 * 109.83086 * 301.45693 * 19 14 13 26 26 H 0.97004 * 119.99587 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.46672 * 299.99752 * 10 9 7 28 28 H 1.08992 * 109.47095 * 59.99866 * 10 9 7 29 29 H 1.09001 * 109.46819 * 299.99098 * 11 10 9 30 30 H 1.08992 * 109.47418 * 59.99990 * 11 10 9 31 31 H 1.08998 * 109.47148 * 300.00080 * 12 11 10 32 32 H 1.09000 * 109.46737 * 60.00273 * 12 11 10 33 33 H 1.00903 * 111.00026 * 297.26792 * 13 12 11 34 34 H 1.08992 * 115.55033 * 147.34918 * 16 14 13 35 35 H 1.08998 * 117.50144 * 0.02562 * 17 16 14 36 36 H 1.08996 * 117.49818 * 145.02218 * 17 16 14 37 37 H 1.08996 * 117.49606 * 214.98410 * 18 16 14 38 38 H 1.09000 * 117.49695 * 359.97438 * 18 16 14 39 39 H 1.08998 * 109.47031 * 305.00001 * 20 19 14 40 40 H 1.09001 * 109.46851 * 65.00279 * 20 19 14 41 41 H 0.96698 * 114.00487 * 180.02562 * 21 20 19 42 42 H 1.08999 * 110.85211 * 337.32065 * 22 19 14 43 43 H 1.09002 * 110.84652 * 100.93823 * 22 19 14 44 44 H 1.08999 * 111.12190 * 276.21437 * 23 22 19 45 45 H 1.08998 * 111.16067 * 152.07060 * 23 22 19 46 46 H 1.09000 * 110.30923 * 204.63990 * 24 23 22 47 47 H 1.09003 * 110.39261 * 82.51283 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1042 1.6963 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1042 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0013 11 6 1.9790 -5.3243 -0.0031 12 6 3.1511 -6.3079 -0.0032 13 7 2.6358 -7.6836 -0.0042 14 6 3.7269 -8.6541 -0.1643 15 1 4.5734 -8.1719 -0.6528 16 6 4.1571 -9.1691 1.2107 17 6 3.3954 -8.6471 2.4306 18 6 4.8256 -8.1732 2.1606 19 6 3.2445 -9.8271 -1.0202 20 6 4.3708 -10.8502 -1.1803 21 8 3.9522 -11.8834 -2.0742 22 6 2.7983 -9.3151 -2.4066 23 6 1.5413 -10.1824 -2.6893 24 6 0.9636 -10.3377 -1.2601 25 8 2.1102 -10.4458 -0.4017 26 1 -0.4850 0.8401 0.0004 27 1 3.1249 -3.7310 -0.8909 28 1 3.1236 -3.7319 0.8891 29 1 1.3696 -5.4850 0.8863 30 1 1.3714 -5.4837 -0.8937 31 1 3.7603 -6.1470 -0.8926 32 1 3.7590 -6.1486 0.8873 33 1 2.1046 -7.8713 0.8328 34 1 4.5044 -10.2018 1.2383 35 1 2.5875 -7.9371 2.2536 36 1 3.2420 -9.3363 3.2609 37 1 5.6126 -8.5509 2.8133 38 1 4.9592 -7.1513 1.8058 39 1 5.2551 -10.3569 -1.5837 40 1 4.6081 -11.2842 -0.2090 41 1 4.6180 -12.5688 -2.2227 42 1 2.5383 -8.2574 -2.3644 43 1 3.5708 -9.4963 -3.1540 44 1 1.8178 -11.1498 -3.1086 45 1 0.8414 -9.6599 -3.3414 46 1 0.3551 -11.2396 -1.1939 47 1 0.3718 -9.4623 -0.9924 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339764157.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:53 Heat of formation + Delta-G solvation = -71.709587 kcal Electronic energy + Delta-G solvation = -24984.243987 eV Core-core repulsion = 21486.970136 eV Total energy + Delta-G solvation = -3497.273851 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51437 -38.26897 -36.53461 -35.13990 -32.73366 -32.41153 -31.85290 -30.69316 -26.46919 -25.72407 -25.48831 -24.00950 -22.62533 -22.08284 -20.99115 -20.80347 -19.34521 -17.82975 -17.42102 -16.96830 -16.56423 -15.98243 -15.23081 -15.02496 -14.82064 -14.75894 -14.55021 -14.01943 -13.91050 -13.54104 -13.10290 -13.02931 -12.77011 -12.39668 -12.27397 -12.22086 -11.68743 -11.65381 -11.55832 -11.27204 -11.20312 -11.12146 -11.04621 -10.80776 -10.66183 -10.62243 -10.44138 -10.35070 -10.19975 -10.15276 -9.62366 -9.37171 -9.04096 -8.33031 -8.28419 -6.51065 -6.21486 -3.91557 3.21833 3.23560 3.28211 3.46015 3.59368 3.68684 3.87407 4.23506 4.31120 4.47910 4.63162 4.71675 4.77069 4.82749 4.90732 5.02611 5.06618 5.14205 5.15893 5.18480 5.24116 5.34335 5.37793 5.46026 5.48945 5.57580 5.67380 5.76573 5.78359 5.81916 5.87454 5.88957 5.91889 5.95988 5.97757 5.98489 6.14166 6.32847 6.35380 6.61398 6.75712 7.00322 7.13854 7.34943 7.41129 7.61187 8.37451 9.24573 10.86641 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021124 B = 0.002615 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.219467 B =10704.330746 C =11280.252100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.071 0.929 9 S -0.132 6.132 10 C -0.112 4.112 11 C -0.093 4.093 12 C 0.059 3.941 13 N -0.679 5.679 14 C 0.117 3.883 15 H 0.086 0.914 16 C -0.172 4.172 17 C -0.176 4.176 18 C -0.186 4.186 19 C 0.129 3.871 20 C 0.073 3.927 21 O -0.562 6.562 22 C -0.131 4.131 23 C -0.147 4.147 24 C 0.061 3.939 25 O -0.361 6.361 26 H 0.268 0.732 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.032 0.968 33 H 0.350 0.650 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.374 0.626 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.362 -24.064 -1.433 25.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.665 4.665 8 H 0.089 0.911 9 S 0.097 5.903 10 C -0.261 4.261 11 C -0.132 4.132 12 C -0.071 4.071 13 N -0.314 5.314 14 C 0.006 3.994 15 H 0.104 0.896 16 C -0.192 4.192 17 C -0.214 4.214 18 C -0.223 4.223 19 C 0.088 3.912 20 C -0.006 4.006 21 O -0.367 6.367 22 C -0.169 4.169 23 C -0.184 4.184 24 C -0.016 4.016 25 O -0.280 6.280 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.175 0.825 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.221 0.779 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.338 -23.838 -1.901 25.014 hybrid contribution 2.881 1.101 0.802 3.186 sum 10.219 -22.737 -1.099 24.952 Atomic orbital electron populations 1.70019 1.05908 1.27402 1.47211 1.25013 0.95079 0.99061 0.94647 0.86233 0.79243 0.81275 0.78820 1.19945 1.20813 1.19975 1.22651 0.94457 0.90876 1.58522 0.91081 1.84641 1.09535 0.99324 1.96838 1.23221 1.02825 0.97456 1.02618 1.21212 0.96967 0.91955 1.03058 1.22203 0.97227 0.87335 1.00372 1.60464 1.23048 1.01635 1.46301 1.21274 0.93277 0.92095 0.92792 0.89610 1.23078 1.04931 0.99216 0.91934 1.23022 0.95129 1.03859 0.99387 1.23138 0.96083 0.99751 1.03324 1.21959 0.86931 0.89685 0.92602 1.22532 0.95889 0.89323 0.92829 1.86519 1.45165 1.37727 1.67248 1.22950 0.97747 1.01391 0.94788 1.23135 0.97110 1.00689 0.97487 1.23238 0.88691 1.00848 0.88812 1.88369 1.17948 1.78355 1.43288 0.92267 0.92226 0.92422 0.91911 0.90808 0.91234 0.95032 0.82533 0.87552 0.88226 0.88679 0.88958 0.88491 0.92999 0.93030 0.77946 0.88988 0.91128 0.90329 0.90761 0.90925 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 2 C 0.07 2.03 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.91 9.50 30.94 0.29 -14.62 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.13 -3.46 21.44 -107.50 -2.30 -5.77 16 10 C -0.11 -2.25 5.67 37.16 0.21 -2.04 16 11 C -0.09 -1.50 5.53 -26.73 -0.15 -1.65 16 12 C 0.06 0.75 5.37 -3.82 -0.02 0.73 16 13 N -0.68 -7.80 4.95 -106.72 -0.53 -8.32 16 14 C 0.12 1.18 1.79 -67.71 -0.12 1.06 16 15 H 0.09 0.85 7.54 -51.93 -0.39 0.46 16 16 C -0.17 -1.63 5.21 -90.62 -0.47 -2.10 16 17 C -0.18 -1.74 9.58 -26.70 -0.26 -1.99 16 18 C -0.19 -1.74 9.91 -26.70 -0.26 -2.01 16 19 C 0.13 1.32 0.54 -89.89 -0.05 1.27 16 20 C 0.07 0.62 5.73 37.16 0.21 0.83 16 21 O -0.56 -4.83 11.98 -40.13 -0.48 -5.31 16 22 C -0.13 -1.38 5.65 -24.78 -0.14 -1.52 16 23 C -0.15 -1.50 6.79 -24.48 -0.17 -1.67 16 24 C 0.06 0.66 7.78 38.18 0.30 0.96 16 25 O -0.36 -4.35 10.17 -40.13 -0.41 -4.76 16 26 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.06 1.19 8.14 -51.91 -0.42 0.77 16 28 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.07 0.88 7.89 -51.93 -0.41 0.47 16 32 H 0.03 0.40 5.83 -51.93 -0.30 0.09 16 33 H 0.35 4.14 5.47 -39.29 -0.21 3.93 16 34 H 0.11 0.97 6.14 -51.93 -0.32 0.65 16 35 H 0.10 1.06 5.67 -51.93 -0.29 0.77 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.99 6.09 -51.93 -0.32 0.67 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.05 0.42 6.35 -51.93 -0.33 0.09 16 41 H 0.37 1.55 9.12 45.56 0.42 1.96 16 42 H 0.09 1.08 7.16 -51.93 -0.37 0.71 16 43 H 0.07 0.70 7.79 -51.93 -0.40 0.30 16 44 H 0.08 0.82 7.35 -51.93 -0.38 0.44 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -32.11 377.10 -10.14 -42.25 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -7.09 Total: 5.85 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -0.72 Total: -20.80 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.20 Total: -33.75 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.89 Total: -10.07 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.30 Total: -5.77 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.11 -10.14 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339764157.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.461 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds