Wall clock time and date at job start Tue Mar 31 2020 11:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48506 * 109.47231 * 89.99693 * 3 2 1 5 5 H 1.48501 * 109.47369 * 210.00220 * 3 2 1 6 6 H 1.48506 * 109.46981 * 329.99986 * 3 2 1 7 7 C 1.38806 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99791 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99659 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99573 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46542 * 179.97438 * 10 9 7 12 12 C 1.53011 * 109.46651 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.46686 * 180.02562 * 12 11 10 14 14 C 1.46903 * 110.99419 * 174.23631 * 13 12 11 15 15 H 1.08993 * 109.47239 * 30.70764 * 14 13 12 16 16 C 1.53006 * 109.46944 * 270.70258 * 14 13 12 17 17 C 1.52998 * 117.49568 * 16.87407 * 16 14 13 18 18 C 1.52996 * 117.50202 * 308.25109 * 16 14 13 19 19 C 1.52998 * 109.46928 * 150.71190 * 14 13 12 20 20 C 1.52999 * 109.86672 * 314.44455 * 19 14 13 21 21 O 1.42905 * 109.47130 * 185.00319 * 20 19 14 22 22 C 1.54106 * 109.87756 * 193.44202 * 19 14 13 23 23 C 1.54813 * 104.18581 * 242.60035 * 22 19 14 24 24 C 1.54991 * 102.09195 * 20.88004 * 23 22 19 25 25 O 1.43741 * 109.88417 * 75.45014 * 19 14 13 26 26 H 0.96999 * 119.99777 * 359.97438 * 1 2 3 27 27 H 1.08995 * 109.47322 * 300.00259 * 10 9 7 28 28 H 1.09000 * 109.47019 * 60.01069 * 10 9 7 29 29 H 1.08995 * 109.47681 * 300.00232 * 11 10 9 30 30 H 1.09003 * 109.47159 * 60.00864 * 11 10 9 31 31 H 1.08995 * 109.47160 * 300.00419 * 12 11 10 32 32 H 1.09003 * 109.46741 * 60.00476 * 12 11 10 33 33 H 1.00898 * 111.00279 * 298.18621 * 13 12 11 34 34 H 1.08997 * 115.55065 * 162.57667 * 16 14 13 35 35 H 1.09004 * 117.50603 * 359.97438 * 17 16 14 36 36 H 1.09007 * 117.50080 * 145.01636 * 17 16 14 37 37 H 1.08994 * 117.50019 * 214.97900 * 18 16 14 38 38 H 1.09004 * 117.49663 * 359.97438 * 18 16 14 39 39 H 1.09004 * 109.47679 * 305.00264 * 20 19 14 40 40 H 1.09001 * 109.47515 * 65.00538 * 20 19 14 41 41 H 0.96700 * 114.00020 * 180.02562 * 21 20 19 42 42 H 1.08997 * 110.48354 * 1.27700 * 22 19 14 43 43 H 1.09007 * 110.48811 * 123.79267 * 22 19 14 44 44 H 1.08998 * 110.90498 * 139.07679 * 23 22 19 45 45 H 1.09001 * 110.90522 * 262.64392 * 23 22 19 46 46 H 1.09002 * 110.62096 * 81.47690 * 24 23 22 47 47 H 1.08996 * 110.61969 * 204.31306 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5479 1.4402 -0.7001 6 1 1.4478 2.6527 -0.7001 7 6 2.0104 -1.2021 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0021 11 6 1.9794 -5.3242 -0.0017 12 6 3.1515 -6.3077 -0.0024 13 7 2.6363 -7.6834 -0.0026 14 6 3.7296 -8.6549 -0.1410 15 1 4.6337 -8.2517 0.3150 16 6 3.9846 -8.9276 -1.6248 17 6 3.4147 -7.9295 -2.6347 18 6 2.7828 -9.3153 -2.4887 19 6 3.3438 -9.9598 0.5583 20 6 2.7444 -9.6557 1.9327 21 8 2.4950 -10.8806 2.6253 22 6 4.5866 -10.8573 0.7156 23 6 4.2522 -12.1181 -0.1183 24 6 3.1479 -11.5937 -1.0710 25 8 2.3912 -10.6801 -0.2417 26 1 -0.4850 0.8401 0.0004 27 1 3.1239 -3.7309 -0.8924 28 1 3.1251 -3.7318 0.8875 29 1 1.3717 -5.4844 0.8888 30 1 1.3699 -5.4842 -0.8912 31 1 3.7596 -6.1476 -0.8927 32 1 3.7606 -6.1476 0.8873 33 1 2.0931 -7.8663 0.8278 34 1 4.9433 -9.3899 -1.8598 35 1 2.8577 -7.0787 -2.2421 36 1 3.9986 -7.7348 -3.5344 37 1 2.9510 -10.0323 -3.2922 38 1 1.8105 -9.3764 -1.9998 39 1 3.4438 -9.0490 2.5080 40 1 1.8082 -9.1114 1.8086 41 1 2.1135 -10.7637 3.5061 42 1 5.4699 -10.3590 0.3162 43 1 4.7381 -11.1192 1.7628 44 1 5.1231 -12.4549 -0.6804 45 1 3.8704 -12.9158 0.5189 46 1 3.5892 -11.0680 -1.9178 47 1 2.5176 -12.4133 -1.4160 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339764158.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:55 Heat of formation + Delta-G solvation = -61.700510 kcal Electronic energy + Delta-G solvation = -25100.178127 eV Core-core repulsion = 21603.338302 eV Total energy + Delta-G solvation = -3496.839825 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.91990 -37.51472 -36.78973 -35.29758 -33.03159 -32.41703 -32.18644 -30.16034 -26.78235 -25.97280 -25.52665 -23.99726 -22.78548 -21.60285 -21.06310 -20.78554 -19.49678 -18.01910 -17.42657 -16.66351 -16.32794 -15.92103 -15.43621 -15.09633 -14.79983 -14.71168 -14.64251 -14.14211 -14.02232 -13.63641 -13.36814 -13.09138 -12.94219 -12.47369 -12.04510 -11.98728 -11.85982 -11.60168 -11.39030 -11.31800 -11.15691 -11.12543 -11.05038 -10.78553 -10.75090 -10.60322 -10.43539 -10.28984 -10.24056 -10.00973 -9.54445 -9.23192 -9.04919 -8.43315 -8.28130 -6.51118 -6.21703 -3.91656 3.21670 3.22675 3.29467 3.50558 3.58634 3.68608 4.00783 4.12226 4.24149 4.41777 4.50297 4.57754 4.76818 4.88746 4.94457 5.02846 5.03272 5.14163 5.17207 5.22530 5.26386 5.31238 5.40395 5.47697 5.49476 5.55359 5.58652 5.60213 5.70182 5.77212 5.77741 5.82107 5.90889 5.93506 5.99403 6.10185 6.32213 6.40478 6.50030 6.61413 6.74299 6.81540 7.05141 7.29667 7.35984 7.61464 8.37638 9.24532 10.86481 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025947 B = 0.002489 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.872862 B =11244.691713 C =11688.090967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.272 1.272 6 H -0.282 1.282 7 C -0.516 4.516 8 H 0.072 0.928 9 S -0.132 6.132 10 C -0.112 4.112 11 C -0.094 4.094 12 C 0.058 3.942 13 N -0.681 5.681 14 C 0.109 3.891 15 H 0.056 0.944 16 C -0.157 4.157 17 C -0.173 4.173 18 C -0.153 4.153 19 C 0.111 3.889 20 C 0.076 3.924 21 O -0.561 6.561 22 C -0.137 4.137 23 C -0.149 4.149 24 C 0.032 3.968 25 O -0.341 6.341 26 H 0.267 0.733 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.026 0.974 33 H 0.341 0.659 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.379 0.621 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.473 -24.560 0.930 26.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.197 1.197 6 H -0.207 1.207 7 C -0.664 4.664 8 H 0.090 0.910 9 S 0.096 5.904 10 C -0.261 4.261 11 C -0.132 4.132 12 C -0.072 4.072 13 N -0.315 5.315 14 C -0.001 4.001 15 H 0.073 0.927 16 C -0.176 4.176 17 C -0.210 4.210 18 C -0.190 4.190 19 C 0.071 3.929 20 C -0.002 4.002 21 O -0.366 6.366 22 C -0.175 4.175 23 C -0.187 4.187 24 C -0.045 4.045 25 O -0.260 6.260 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.044 0.956 33 H 0.163 0.837 34 H 0.114 0.886 35 H 0.132 0.868 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.130 0.870 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.226 0.774 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.039 -24.841 -0.277 26.111 hybrid contribution 2.390 1.633 1.417 3.223 sum 10.429 -23.208 1.140 25.469 Atomic orbital electron populations 1.70024 1.05911 1.27295 1.47303 1.25017 0.95075 0.99071 0.94662 0.86176 0.79461 0.81613 0.78330 1.20310 1.19701 1.20746 1.22692 0.94491 0.90852 1.58389 0.91025 1.84649 1.09541 0.99356 1.96834 1.23223 1.02815 0.97429 1.02658 1.21225 0.96939 0.91973 1.03105 1.22206 0.97240 0.87184 1.00569 1.60426 1.23023 1.01986 1.46078 1.21408 0.93216 0.90871 0.94623 0.92657 1.22160 0.97593 1.06321 0.91477 1.23152 1.03686 0.95166 0.98982 1.22909 0.98384 0.97137 1.00527 1.22164 0.89397 0.92110 0.89276 1.22305 0.99672 0.86687 0.91562 1.86501 1.86083 1.30403 1.33594 1.22853 0.97058 0.95742 1.01893 1.23041 0.99322 0.97984 0.98372 1.24037 0.93363 0.92475 0.94584 1.89018 1.28996 1.53751 1.54194 0.92320 0.92147 0.92455 0.91950 0.90699 0.90456 0.95560 0.83675 0.88628 0.86830 0.90128 0.90192 0.87038 0.92716 0.92083 0.77435 0.90971 0.90010 0.90845 0.90733 0.90012 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 21.63 29.55 -169.99 -5.02 16.60 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.88 9.50 30.94 0.29 -14.59 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.13 -3.48 21.44 -107.50 -2.30 -5.78 16 10 C -0.11 -2.25 5.67 37.16 0.21 -2.04 16 11 C -0.09 -1.51 5.52 -26.72 -0.15 -1.66 16 12 C 0.06 0.75 4.52 -3.82 -0.02 0.74 16 13 N -0.68 -7.86 5.17 -106.72 -0.55 -8.41 16 14 C 0.11 1.11 1.86 -67.71 -0.13 0.99 16 15 H 0.06 0.56 7.64 -51.93 -0.40 0.16 16 16 C -0.16 -1.58 4.01 -90.62 -0.36 -1.94 16 17 C -0.17 -1.96 9.13 -26.73 -0.24 -2.20 16 18 C -0.15 -1.61 6.61 -26.73 -0.18 -1.79 16 19 C 0.11 1.09 0.76 -90.04 -0.07 1.02 16 20 C 0.08 0.69 5.40 37.16 0.20 0.89 16 21 O -0.56 -5.10 12.69 -39.89 -0.51 -5.61 16 22 C -0.14 -1.17 5.75 -25.20 -0.14 -1.31 16 23 C -0.15 -1.19 7.15 -24.72 -0.18 -1.37 16 24 C 0.03 0.28 6.38 38.21 0.24 0.53 16 25 O -0.34 -3.90 8.92 -39.89 -0.36 -4.26 16 26 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 28 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.02 6.39 -51.93 -0.33 0.69 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.34 3.81 5.55 -39.29 -0.22 3.59 16 34 H 0.10 0.86 8.06 -51.93 -0.42 0.44 16 35 H 0.11 1.51 5.44 -51.93 -0.28 1.22 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.73 7.51 -51.93 -0.39 0.34 16 38 H 0.11 1.40 7.08 -51.93 -0.37 1.03 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.58 6.24 -51.93 -0.32 0.25 16 41 H 0.38 1.83 9.12 45.56 0.42 2.24 16 42 H 0.07 0.55 7.56 -51.93 -0.39 0.16 16 43 H 0.08 0.71 7.18 -51.92 -0.37 0.34 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.69 3.94 -51.93 -0.20 0.48 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 369.34 15.07 5.57 5.57 Total: -1.00 -32.50 369.34 -10.11 -42.61 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -7.06 Total: 5.52 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -0.61 Total: -20.82 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.18 Total: -33.84 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.86 Total: -9.87 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -2.30 Total: -5.78 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.50 -10.11 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339764158.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.087 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds