Wall clock time and date at job start Tue Mar 31 2020 10:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00481 * 2 1 4 4 H 1.48499 * 109.47099 * 239.99751 * 3 2 1 5 5 H 1.48506 * 109.46683 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47294 * 119.99122 * 3 2 1 7 7 C 1.37883 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00046 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99779 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46894 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.46892 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47070 * 180.02562 * 11 10 9 13 13 O 1.42097 * 110.54367 * 68.37217 * 12 11 10 14 14 O 1.42098 * 110.54206 * 291.62390 * 12 11 10 15 15 N 1.65595 * 104.45362 * 180.02562 * 12 11 10 16 16 C 1.46496 * 120.00145 * 64.99304 * 15 12 11 17 17 H 1.09006 * 109.17749 * 24.36402 * 16 15 12 18 18 C 1.52825 * 109.22335 * 265.00647 * 16 15 12 19 19 C 1.52836 * 107.50227 * 303.49576 * 18 16 15 20 20 C 1.51106 * 110.70759 * 295.11561 * 19 18 16 21 21 H 1.08993 * 108.03392 * 274.49365 * 20 19 18 22 22 C 1.54741 * 109.80935 * 157.15491 * 20 19 18 23 23 C 1.55213 * 103.47451 * 208.21004 * 22 20 19 24 24 C 1.55226 * 102.18216 * 39.03199 * 23 22 20 25 25 C 1.51248 * 116.56466 * 35.21084 * 20 19 18 26 26 H 1.08998 * 106.14800 * 235.53261 * 25 20 19 27 27 C 1.48920 * 120.41653 * 355.34995 * 25 20 19 28 28 H 0.97008 * 120.00015 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47037 * 59.99870 * 9 7 2 30 30 H 1.09001 * 109.46972 * 299.99161 * 9 7 2 31 31 H 1.09004 * 109.47089 * 59.99957 * 10 9 7 32 32 H 1.09003 * 109.47043 * 300.00087 * 10 9 7 33 33 H 1.08998 * 109.47669 * 59.99960 * 11 10 9 34 34 H 1.09003 * 109.47388 * 299.99925 * 11 10 9 35 35 H 0.97005 * 120.00352 * 245.00512 * 15 12 11 36 36 H 1.08998 * 109.85782 * 183.99694 * 18 16 15 37 37 H 1.09003 * 109.85103 * 62.99022 * 18 16 15 38 38 H 1.08998 * 109.22856 * 174.80446 * 19 18 16 39 39 H 1.08994 * 109.19598 * 55.41217 * 19 18 16 40 40 H 1.08999 * 110.61925 * 89.70925 * 22 20 19 41 41 H 1.08995 * 110.75530 * 326.77481 * 22 20 19 42 42 H 1.09001 * 110.86277 * 280.86099 * 23 22 20 43 43 H 1.09006 * 111.04148 * 157.28438 * 23 22 20 44 44 H 1.09002 * 110.62794 * 79.39095 * 24 23 22 45 45 H 1.08998 * 110.62718 * 202.25790 * 24 23 22 46 46 H 1.09000 * 107.75586 * 241.73982 * 27 25 20 47 47 H 1.09005 * 107.78546 * 125.81721 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4801 -4.9871 0.0012 12 16 2.6588 -6.3659 0.0019 13 8 3.3555 -6.4257 1.2389 14 8 3.3556 -6.4270 -1.2350 15 7 1.7085 -7.7221 0.0019 16 6 0.8494 -8.0144 -1.1481 17 1 1.2586 -7.5280 -2.0337 18 6 -0.5536 -7.4714 -0.8791 19 6 -1.0473 -8.0990 0.4241 20 6 -1.2071 -9.5937 0.2704 21 1 -2.1958 -9.7862 -0.1461 22 6 -1.1374 -10.2740 1.6584 23 6 -0.5854 -11.6893 1.3402 24 6 0.4692 -11.3901 0.2412 25 6 -0.2030 -10.2934 -0.6183 26 1 -0.7839 -10.8268 -1.3707 27 6 0.8117 -9.5077 -1.3738 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5570 -0.8896 30 1 0.6240 -2.5567 0.8904 31 1 2.8718 -3.6044 0.8905 32 1 2.8718 -3.6044 -0.8895 33 1 0.8531 -5.0451 -0.8885 34 1 0.8537 -5.0446 0.8914 35 1 1.7205 -8.3228 0.7634 36 1 -1.2197 -7.7450 -1.6973 37 1 -0.5174 -6.3867 -0.7771 38 1 -2.0087 -7.6608 0.6918 39 1 -0.3267 -7.8945 1.2159 40 1 -2.1300 -10.3403 2.1037 41 1 -0.4570 -9.7361 2.3185 42 1 -1.3739 -12.3361 0.9555 43 1 -0.1158 -12.1329 2.2182 44 1 1.3921 -11.0177 0.6858 45 1 0.6643 -12.2805 -0.3564 46 1 0.6424 -9.6809 -2.4365 47 1 1.7948 -9.9080 -1.1261 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360885558.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:47 Heat of formation + Delta-G solvation = -132.918305 kcal Electronic energy + Delta-G solvation = -25377.299711 eV Core-core repulsion = 21877.371651 eV Total energy + Delta-G solvation = -3499.928060 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.97156 -38.19226 -37.12759 -36.97528 -36.46233 -34.17618 -33.31864 -32.39419 -29.69837 -28.96415 -27.55450 -25.62285 -23.76256 -22.58663 -22.13617 -21.59245 -20.42983 -19.02589 -18.82988 -18.51703 -17.31985 -17.14451 -16.91704 -16.48162 -16.17763 -15.89277 -15.59709 -15.14111 -14.88926 -14.50037 -14.21499 -14.13548 -13.94753 -13.62335 -13.49254 -13.22414 -13.15794 -13.00633 -12.97652 -12.84458 -12.72964 -12.62087 -12.31991 -12.15075 -12.01243 -11.79549 -11.73169 -11.58641 -11.43259 -11.36775 -11.30506 -11.04612 -11.01016 -10.74282 -10.56629 -10.23728 -8.22271 -6.33154 -0.70305 1.40174 1.42630 1.50525 1.81982 2.40015 2.77468 3.11212 3.24372 3.60841 3.61871 3.70251 3.77503 3.93742 4.06604 4.12385 4.20371 4.30476 4.38734 4.43049 4.45299 4.55773 4.65772 4.72945 4.84543 4.84622 4.89652 4.95342 4.98703 5.04996 5.06710 5.11072 5.17780 5.27817 5.30366 5.34419 5.42700 5.44452 5.46182 5.56508 5.59650 5.64177 5.71432 5.79988 6.16753 6.20456 6.82246 7.36009 8.88922 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023176 B = 0.002999 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.845491 B = 9333.516866 C = 9897.589953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.554 4.554 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.106 4.106 11 C -0.610 4.610 12 S 2.627 3.373 13 O -0.995 6.995 14 O -0.991 6.991 15 N -1.101 6.101 16 C 0.149 3.851 17 H 0.090 0.910 18 C -0.147 4.147 19 C -0.113 4.113 20 C -0.077 4.077 21 H 0.064 0.936 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.078 4.078 26 H 0.063 0.937 27 C -0.111 4.111 28 H 0.265 0.735 29 H 0.004 0.996 30 H 0.002 0.998 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.423 0.577 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.316 -25.152 -0.628 25.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.592 4.592 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.145 4.145 11 C -0.740 4.740 12 S 2.722 3.278 13 O -0.986 6.986 14 O -0.981 6.981 15 N -0.862 5.862 16 C 0.043 3.957 17 H 0.108 0.892 18 C -0.186 4.186 19 C -0.151 4.151 20 C -0.095 4.095 21 H 0.083 0.917 22 C -0.162 4.162 23 C -0.164 4.164 24 C -0.161 4.161 25 C -0.097 4.097 26 H 0.082 0.918 27 C -0.150 4.150 28 H 0.074 0.926 29 H 0.022 0.978 30 H 0.021 0.979 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.260 0.740 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.101 0.899 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.510 -24.974 -0.812 25.233 hybrid contribution -0.474 1.082 0.377 1.240 sum -3.984 -23.892 -0.435 24.226 Atomic orbital electron populations 1.70060 1.07590 1.27937 1.51295 1.25917 0.95808 1.03155 0.94574 0.85555 0.78390 0.78279 0.79189 1.19234 1.20594 1.19292 1.21725 0.93718 0.92602 1.51166 0.92254 1.18936 0.93948 0.91702 0.95906 1.21310 0.98665 0.92611 1.01925 1.30623 1.16614 1.13759 1.13045 1.04257 0.75266 0.75473 0.72819 1.93527 1.72128 1.86532 1.46388 1.93530 1.71352 1.86343 1.46839 1.55487 1.61316 1.40576 1.28829 1.20589 0.90256 0.97670 0.87227 0.89162 1.22141 0.96261 1.00615 0.99609 1.21157 1.01481 0.94825 0.97619 1.20779 0.98916 0.94304 0.95514 0.91696 1.22714 1.01112 0.95909 0.96449 1.22580 0.98458 0.96695 0.98652 1.22806 0.98203 0.98134 0.96987 1.20317 0.95977 0.96022 0.97377 0.91813 1.20589 1.00274 0.92602 1.01507 0.92630 0.97780 0.97925 0.91786 0.91608 0.83612 0.83653 0.74033 0.89082 0.91291 0.91738 0.91791 0.91552 0.91773 0.91217 0.91446 0.91873 0.91203 0.89911 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.62 13.29 21.45 0.28 -55.34 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -31.58 9.11 25.60 0.23 -31.35 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.71 4.97 29.85 0.15 1.86 16 10 C -0.11 -4.31 5.16 30.60 0.16 -4.15 16 11 C -0.61 -18.14 5.27 71.98 0.38 -17.76 16 12 S 2.63 74.68 5.43 -56.49 -0.31 74.38 16 13 O -1.00 -34.52 18.08 -127.65 -2.31 -36.82 16 14 O -0.99 -34.01 17.38 -127.65 -2.22 -36.23 16 15 N -1.10 -21.76 4.31 -172.28 -0.74 -22.50 16 16 C 0.15 2.53 2.97 44.30 0.13 2.66 16 17 H 0.09 1.63 7.45 -2.38 -0.02 1.61 16 18 C -0.15 -2.32 5.66 30.48 0.17 -2.15 16 19 C -0.11 -1.70 5.23 29.92 0.16 -1.55 16 20 C -0.08 -0.99 2.76 -11.39 -0.03 -1.02 16 21 H 0.06 0.81 8.11 -2.39 -0.02 0.79 16 22 C -0.12 -1.56 6.32 31.95 0.20 -1.36 16 23 C -0.13 -1.43 6.94 32.12 0.22 -1.20 16 24 C -0.12 -1.45 6.05 31.94 0.19 -1.26 16 25 C -0.08 -0.96 2.65 -12.08 -0.03 -0.99 16 26 H 0.06 0.72 8.00 -2.39 -0.02 0.70 16 27 C -0.11 -1.52 5.10 28.67 0.15 -1.37 16 28 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 29 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.15 3.78 6.73 -2.39 -0.02 3.76 16 34 H 0.15 3.83 8.14 -2.39 -0.02 3.81 16 35 H 0.42 7.09 8.27 -96.74 -0.80 6.29 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.20 5.83 -2.39 -0.01 1.18 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 1.00 6.28 -2.39 -0.02 0.99 16 40 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 0.87 7.61 -2.39 -0.02 0.85 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.06 0.80 7.82 -2.39 -0.02 0.78 16 45 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 46 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 47 H 0.07 1.03 7.18 -2.38 -0.02 1.01 16 Total: -1.00 -72.22 369.99 -0.58 -72.80 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.14 Total: 16.42 kcal Atomic # 6 Polarization: -61.49 SS G_CDS: 2.54 Total: -58.95 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -0.46 Total: -77.84 kcal Atomic # 8 Polarization: -68.53 SS G_CDS: -4.53 Total: -73.05 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 74.68 SS G_CDS: -0.31 Total: 74.38 kcal Total: -72.22 -0.58 -72.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360885558.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.120 kcal (2) G-P(sol) polarization free energy of solvation -72.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds