Wall clock time and date at job start Tue Mar 31 2020 10:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48493 * 109.47307 * 270.00037 * 3 2 1 5 5 H 1.48502 * 109.46969 * 30.00444 * 3 2 1 6 6 H 1.48497 * 109.46659 * 150.00054 * 3 2 1 7 7 C 1.37873 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00306 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47312 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.47127 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54626 * 68.37320 * 11 10 9 13 13 O 1.42101 * 110.53678 * 291.62219 * 11 10 9 14 14 N 1.65597 * 104.45066 * 180.02562 * 11 10 9 15 15 C 1.46499 * 119.99926 * 64.71997 * 14 11 10 16 16 H 1.09000 * 109.47581 * 25.27547 * 15 14 11 17 17 C 1.53001 * 109.47277 * 265.27680 * 15 14 11 18 18 C 1.53005 * 109.47443 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.46606 * 60.00195 * 18 17 15 20 20 H 1.09005 * 109.47002 * 180.02562 * 19 18 17 21 21 C 1.52992 * 109.47525 * 60.00333 * 19 18 17 22 22 C 1.53005 * 109.47492 * 179.97438 * 21 19 18 23 23 C 1.53001 * 109.46842 * 59.99860 * 22 21 19 24 24 C 1.53005 * 109.47350 * 300.00192 * 23 22 21 25 25 C 1.52997 * 109.47192 * 299.99522 * 19 18 17 26 26 H 1.08996 * 109.47890 * 300.00701 * 25 19 18 27 27 C 1.53000 * 109.47226 * 145.27834 * 15 14 11 28 28 H 0.97008 * 119.99976 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47136 * 60.00061 * 9 7 2 30 30 H 1.08998 * 109.47134 * 300.00552 * 9 7 2 31 31 H 1.08990 * 109.47200 * 59.99814 * 10 9 7 32 32 H 1.09004 * 109.47018 * 299.99613 * 10 9 7 33 33 H 0.97001 * 120.00224 * 245.00210 * 14 11 10 34 34 H 1.09005 * 109.47307 * 300.00055 * 17 15 14 35 35 H 1.09005 * 109.47347 * 60.00190 * 17 15 14 36 36 H 1.08997 * 109.47130 * 179.97438 * 18 17 15 37 37 H 1.08996 * 109.46814 * 300.00512 * 18 17 15 38 38 H 1.09005 * 109.46713 * 299.99485 * 21 19 18 39 39 H 1.08997 * 109.47620 * 59.99666 * 21 19 18 40 40 H 1.08991 * 109.47259 * 179.97438 * 22 21 19 41 41 H 1.08996 * 109.47029 * 300.00242 * 22 21 19 42 42 H 1.09005 * 109.47539 * 60.00120 * 23 22 21 43 43 H 1.09000 * 109.47380 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.47779 * 180.02562 * 24 23 22 45 45 H 1.09005 * 109.46741 * 300.00417 * 24 23 22 46 46 H 1.08998 * 109.47008 * 300.00126 * 27 15 14 47 47 H 1.09005 * 109.47059 * 60.00129 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6646 -5.4194 -1.2385 13 8 0.6639 -5.4200 1.2355 14 7 2.5203 -6.3927 -0.0005 15 6 3.4218 -6.5190 1.1474 16 1 2.9316 -6.1284 2.0391 17 6 4.7022 -5.7251 0.8801 18 6 5.6434 -5.8565 2.0792 19 6 5.9928 -7.3304 2.2941 20 1 6.6630 -7.4241 3.1487 21 6 6.6813 -7.8791 1.0429 22 6 7.0313 -9.3530 1.2581 23 6 5.7512 -10.1472 1.5256 24 6 5.0626 -9.5986 2.7770 25 6 4.7125 -8.1243 2.5615 26 1 4.2220 -7.7335 3.4529 27 6 3.7712 -7.9931 1.3617 28 1 -0.4850 0.8401 -0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 2.8719 -3.6044 0.8893 32 1 2.8719 -3.6044 -0.8906 33 1 2.6185 -6.9858 -0.7618 34 1 5.1925 -6.1157 -0.0116 35 1 4.4533 -4.6749 0.7274 36 1 6.5557 -5.2913 1.8886 37 1 5.1529 -5.4656 2.9706 38 1 6.0107 -7.7855 0.1887 39 1 7.5934 -7.3136 0.8525 40 1 7.5214 -9.7439 0.3665 41 1 7.7019 -9.4462 2.1122 42 1 5.0805 -10.0540 0.6714 43 1 6.0005 -11.1972 1.6794 44 1 4.1510 -10.1646 2.9679 45 1 5.7334 -9.6918 3.6311 46 1 2.8591 -8.5587 1.5521 47 1 4.2615 -8.3837 0.4700 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408129025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:11 Heat of formation + Delta-G solvation = -120.595919 kcal Electronic energy + Delta-G solvation = -25668.667803 eV Core-core repulsion = 22169.274081 eV Total energy + Delta-G solvation = -3499.393722 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.56441 -36.65745 -36.19306 -35.39916 -33.90329 -33.43681 -31.93246 -31.17152 -29.09091 -28.36438 -25.60885 -23.94783 -22.49491 -22.16304 -21.60873 -20.79410 -19.10179 -18.16169 -17.32880 -16.56813 -16.20453 -15.77820 -15.44593 -15.27921 -14.85215 -14.62095 -14.53775 -14.12165 -13.77384 -13.40453 -13.30261 -12.78705 -12.65977 -12.53294 -12.30353 -12.26712 -11.85391 -11.75614 -11.63455 -11.56919 -11.44195 -11.35186 -11.17147 -11.07493 -10.92359 -10.85767 -10.60431 -10.39661 -10.36940 -10.23352 -10.09121 -9.99324 -9.75344 -9.38577 -8.99459 -8.49814 -6.11893 -4.17370 0.83243 3.16341 3.26180 3.32423 3.35001 4.26017 4.37369 4.38095 4.40870 4.43988 4.72214 4.75942 4.87209 4.90097 5.01212 5.07452 5.14484 5.22853 5.23347 5.27823 5.32259 5.40201 5.42716 5.49329 5.51978 5.63257 5.68170 5.71979 5.79493 5.82764 5.84360 5.90264 5.92330 5.99377 6.04919 6.12551 6.20750 6.26212 6.30434 6.40821 6.53270 7.15957 7.31214 7.37572 7.81046 8.18278 8.86007 9.47325 10.99172 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.003442 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.954814 B = 8132.965423 C = 9076.603709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.591 4.591 11 S 2.591 3.409 12 O -0.970 6.970 13 O -0.968 6.968 14 N -1.123 6.123 15 C 0.149 3.851 16 H 0.091 0.909 17 C -0.150 4.150 18 C -0.114 4.114 19 C -0.082 4.082 20 H 0.069 0.931 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.113 4.113 25 C -0.082 4.082 26 H 0.074 0.926 27 C -0.118 4.118 28 H 0.265 0.735 29 H 0.033 0.967 30 H 0.033 0.967 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.411 0.589 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.686 -19.104 3.957 24.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.724 4.724 11 S 2.689 3.311 12 O -0.960 6.960 13 O -0.958 6.958 14 N -0.878 5.878 15 C 0.041 3.959 16 H 0.109 0.891 17 C -0.189 4.189 18 C -0.152 4.152 19 C -0.100 4.100 20 H 0.088 0.912 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.151 4.151 25 C -0.101 4.101 26 H 0.092 0.908 27 C -0.157 4.157 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.243 0.757 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.535 -19.083 4.120 23.755 hybrid contribution 1.126 1.038 -0.371 1.576 sum 14.661 -18.045 3.750 23.551 Atomic orbital electron populations 1.69959 1.06116 1.27171 1.49615 1.25067 0.94963 0.99526 0.94941 0.86476 0.79713 0.82912 0.78222 1.20486 1.21022 1.19761 1.20998 0.93037 0.89773 1.52065 0.92057 1.18960 0.92689 0.90590 0.98852 1.30551 1.13658 1.18184 1.10010 1.05562 0.74756 0.76705 0.74114 1.93548 1.71835 1.85381 1.45248 1.93538 1.71458 1.85011 1.45753 1.55861 1.52390 1.51983 1.27577 1.20798 0.89895 0.96755 0.88403 0.89058 1.22298 0.96018 1.01321 0.99235 1.21543 0.99411 0.95822 0.98474 1.21144 0.96282 0.94541 0.98060 0.91235 1.21696 1.00250 0.95336 0.98392 1.21524 0.97333 0.95548 1.01201 1.21583 0.97120 0.98779 0.98499 1.21551 1.00275 0.95437 0.97809 1.21138 0.95428 0.95264 0.98249 0.90761 1.21927 0.99506 0.95240 0.99028 0.92543 0.94887 0.94860 0.86189 0.86100 0.75654 0.90857 0.90684 0.91487 0.91429 0.91137 0.92190 0.92360 0.92283 0.91650 0.92438 0.91965 0.92011 0.91242 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 10 C -0.59 -11.22 5.13 37.16 0.19 -11.03 16 11 S 2.59 46.57 5.44 -107.50 -0.58 45.99 16 12 O -0.97 -20.36 18.08 -57.54 -1.04 -21.40 16 13 O -0.97 -20.28 17.40 -57.54 -1.00 -21.28 16 14 N -1.12 -14.42 5.36 -4.89 -0.03 -14.45 16 15 C 0.15 1.69 2.68 -67.93 -0.18 1.51 16 16 H 0.09 1.15 7.49 -51.93 -0.39 0.76 16 17 C -0.15 -1.54 5.21 -26.73 -0.14 -1.68 16 18 C -0.11 -1.03 5.45 -26.73 -0.15 -1.17 16 19 C -0.08 -0.65 2.46 -90.63 -0.22 -0.87 16 20 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 21 C -0.12 -0.89 4.59 -26.73 -0.12 -1.01 16 22 C -0.12 -0.81 5.92 -26.73 -0.16 -0.96 16 23 C -0.12 -0.84 5.65 -26.73 -0.15 -0.99 16 24 C -0.11 -0.82 5.45 -26.70 -0.15 -0.97 16 25 C -0.08 -0.68 2.47 -90.57 -0.22 -0.90 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 C -0.12 -1.10 4.12 -26.70 -0.11 -1.21 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.12 2.04 6.76 -51.93 -0.35 1.69 16 32 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 33 H 0.41 4.40 8.80 -34.47 -0.30 4.10 16 34 H 0.07 0.68 6.43 -51.93 -0.33 0.35 16 35 H 0.07 0.85 5.74 -51.93 -0.30 0.55 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.56 4.81 -51.93 -0.25 0.31 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.07 0.62 4.81 -51.93 -0.25 0.37 16 LS Contribution 360.40 15.07 5.43 5.43 Total: -1.00 -33.92 360.40 -11.43 -45.35 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.97 Total: 1.78 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: -1.96 Total: -31.79 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.71 Total: -40.24 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -2.04 Total: -42.68 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 46.57 SS G_CDS: -0.58 Total: 45.99 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.92 -11.43 -45.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408129025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.243 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds