Wall clock time and date at job start Tue Mar 31 2020 10:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99941 * 2 1 4 4 H 1.48493 * 109.47307 * 270.00037 * 3 2 1 5 5 H 1.48502 * 109.46969 * 30.00444 * 3 2 1 6 6 H 1.48497 * 109.46659 * 150.00054 * 3 2 1 7 7 C 1.37873 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99963 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00306 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47312 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.47127 * 180.02562 * 10 9 7 12 12 O 1.42100 * 110.54626 * 68.37320 * 11 10 9 13 13 O 1.42101 * 110.53678 * 291.62219 * 11 10 9 14 14 N 1.65597 * 104.45066 * 180.02562 * 11 10 9 15 15 C 1.46499 * 119.99926 * 64.71997 * 14 11 10 16 16 H 1.09000 * 109.47581 * 25.27547 * 15 14 11 17 17 C 1.53001 * 109.47277 * 265.27680 * 15 14 11 18 18 C 1.53005 * 109.47443 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.46606 * 60.00195 * 18 17 15 20 20 H 1.09005 * 109.47002 * 180.02562 * 19 18 17 21 21 C 1.52992 * 109.47525 * 60.00333 * 19 18 17 22 22 C 1.53005 * 109.47492 * 179.97438 * 21 19 18 23 23 C 1.53001 * 109.46842 * 59.99860 * 22 21 19 24 24 C 1.53005 * 109.47350 * 300.00192 * 23 22 21 25 25 C 1.52997 * 109.47192 * 299.99522 * 19 18 17 26 26 H 1.08996 * 109.47890 * 300.00701 * 25 19 18 27 27 C 1.53000 * 109.47226 * 145.27834 * 15 14 11 28 28 H 0.97008 * 119.99976 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47136 * 60.00061 * 9 7 2 30 30 H 1.08998 * 109.47134 * 300.00552 * 9 7 2 31 31 H 1.08990 * 109.47200 * 59.99814 * 10 9 7 32 32 H 1.09004 * 109.47018 * 299.99613 * 10 9 7 33 33 H 0.97001 * 120.00224 * 245.00210 * 14 11 10 34 34 H 1.09005 * 109.47307 * 300.00055 * 17 15 14 35 35 H 1.09005 * 109.47347 * 60.00190 * 17 15 14 36 36 H 1.08997 * 109.47130 * 179.97438 * 18 17 15 37 37 H 1.08996 * 109.46814 * 300.00512 * 18 17 15 38 38 H 1.09005 * 109.46713 * 299.99485 * 21 19 18 39 39 H 1.08997 * 109.47620 * 59.99666 * 21 19 18 40 40 H 1.08991 * 109.47259 * 179.97438 * 22 21 19 41 41 H 1.08996 * 109.47029 * 300.00242 * 22 21 19 42 42 H 1.09005 * 109.47539 * 60.00120 * 23 22 21 43 43 H 1.09000 * 109.47380 * 180.02562 * 23 22 21 44 44 H 1.08997 * 109.47779 * 180.02562 * 24 23 22 45 45 H 1.09005 * 109.46741 * 300.00417 * 24 23 22 46 46 H 1.08998 * 109.47008 * 300.00126 * 27 15 14 47 47 H 1.09005 * 109.47059 * 60.00129 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2331 -0.0013 12 8 0.6646 -5.4194 -1.2385 13 8 0.6639 -5.4200 1.2355 14 7 2.5203 -6.3927 -0.0005 15 6 3.4218 -6.5190 1.1474 16 1 2.9316 -6.1284 2.0391 17 6 4.7022 -5.7251 0.8801 18 6 5.6434 -5.8565 2.0792 19 6 5.9928 -7.3304 2.2941 20 1 6.6630 -7.4241 3.1487 21 6 6.6813 -7.8791 1.0429 22 6 7.0313 -9.3530 1.2581 23 6 5.7512 -10.1472 1.5256 24 6 5.0626 -9.5986 2.7770 25 6 4.7125 -8.1243 2.5615 26 1 4.2220 -7.7335 3.4529 27 6 3.7712 -7.9931 1.3617 28 1 -0.4850 0.8401 -0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 2.8719 -3.6044 0.8893 32 1 2.8719 -3.6044 -0.8906 33 1 2.6185 -6.9858 -0.7618 34 1 5.1925 -6.1157 -0.0116 35 1 4.4533 -4.6749 0.7274 36 1 6.5557 -5.2913 1.8886 37 1 5.1529 -5.4656 2.9706 38 1 6.0107 -7.7855 0.1887 39 1 7.5934 -7.3136 0.8525 40 1 7.5214 -9.7439 0.3665 41 1 7.7019 -9.4462 2.1122 42 1 5.0805 -10.0540 0.6714 43 1 6.0005 -11.1972 1.6794 44 1 4.1510 -10.1646 2.9679 45 1 5.7334 -9.6918 3.6311 46 1 2.8591 -8.5587 1.5521 47 1 4.2615 -8.3837 0.4700 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408129025.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:10 Heat of formation + Delta-G solvation = -143.122795 kcal Electronic energy + Delta-G solvation = -25669.644642 eV Core-core repulsion = 22169.274081 eV Total energy + Delta-G solvation = -3500.370560 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.25694 -38.18448 -37.16233 -36.97611 -35.90114 -34.24434 -33.14296 -32.59642 -29.85139 -29.12131 -27.58863 -24.64917 -23.63741 -23.10742 -22.84868 -21.48715 -20.42140 -19.30060 -18.77660 -18.05874 -17.49993 -17.04222 -16.53091 -16.39280 -16.32022 -15.92775 -15.36646 -15.06150 -14.82113 -14.53995 -14.42030 -14.16353 -13.75355 -13.49627 -13.34623 -13.21602 -13.15280 -13.06965 -12.99854 -12.92436 -12.85401 -12.75305 -12.28762 -12.25553 -12.16026 -11.99269 -11.85932 -11.76823 -11.49704 -11.36213 -11.10164 -10.89971 -10.72262 -10.64847 -10.63730 -10.21292 -8.25627 -6.39564 -0.67022 1.41037 1.42899 1.53956 1.84716 2.38250 2.80357 3.07925 3.26223 3.68508 3.73045 3.77254 3.97655 4.05109 4.10363 4.16191 4.22244 4.34627 4.38935 4.47252 4.52018 4.60550 4.66248 4.71407 4.75225 4.77752 4.86463 4.89367 4.96266 5.07168 5.19569 5.23566 5.24555 5.27995 5.29640 5.31532 5.32641 5.42273 5.45489 5.53734 5.60621 5.63125 5.68921 5.74596 6.06454 6.18141 6.74130 7.30618 8.86762 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.019333 B = 0.003442 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.954814 B = 8132.965423 C = 9076.603709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.021 3.979 10 C -0.587 4.587 11 S 2.616 3.384 12 O -1.001 7.001 13 O -1.000 7.000 14 N -1.102 6.102 15 C 0.141 3.859 16 H 0.077 0.923 17 C -0.150 4.150 18 C -0.115 4.115 19 C -0.078 4.078 20 H 0.076 0.924 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.111 4.111 25 C -0.081 4.081 26 H 0.067 0.933 27 C -0.114 4.114 28 H 0.267 0.733 29 H 0.005 0.995 30 H 0.006 0.994 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.425 0.575 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.566 -19.802 3.971 26.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.576 4.576 8 H 0.095 0.905 9 C -0.018 4.018 10 C -0.719 4.719 11 S 2.713 3.287 12 O -0.991 6.991 13 O -0.989 6.989 14 N -0.862 5.862 15 C 0.035 3.965 16 H 0.095 0.905 17 C -0.189 4.189 18 C -0.153 4.153 19 C -0.096 4.096 20 H 0.095 0.905 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.159 4.159 24 C -0.148 4.148 25 C -0.101 4.101 26 H 0.085 0.915 27 C -0.153 4.153 28 H 0.076 0.924 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.159 0.841 32 H 0.162 0.838 33 H 0.261 0.739 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 16.427 -19.790 4.124 26.048 hybrid contribution 0.242 1.167 -0.350 1.243 sum 16.669 -18.622 3.774 25.276 Atomic orbital electron populations 1.70109 1.08106 1.28295 1.50966 1.26122 0.95841 1.03896 0.94420 0.85313 0.78683 0.77655 0.78617 1.19633 1.20925 1.18033 1.21510 0.93995 0.90699 1.51374 0.90515 1.18819 0.93580 0.93141 0.96266 1.30445 1.12684 1.16510 1.12256 1.04521 0.74844 0.76684 0.72676 1.93498 1.73323 1.85859 1.46463 1.93497 1.72850 1.85490 1.47093 1.55357 1.51671 1.50420 1.28762 1.21043 0.89857 0.98602 0.87048 0.90467 1.22305 0.95626 1.00415 1.00557 1.21559 0.99316 0.96812 0.97583 1.21114 0.96135 0.93630 0.98718 0.90549 1.21689 1.00253 0.95851 0.97802 1.21511 0.97292 0.94998 1.01603 1.21584 0.97084 0.99220 0.98046 1.21530 1.00461 0.94489 0.98349 1.21140 0.95336 0.96217 0.97369 0.91451 1.21917 0.99741 0.93390 1.00237 0.92424 0.97643 0.97610 0.84061 0.83808 0.73910 0.89428 0.91733 0.90652 0.92010 0.91438 0.91804 0.91855 0.91962 0.91925 0.91769 0.92070 0.91417 0.91790 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.17 13.29 21.45 0.28 -56.88 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.21 16 3 Si 0.97 43.23 29.54 68.60 2.03 45.25 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.54 -29.69 9.11 25.60 0.23 -29.46 16 8 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 9 C 0.02 1.09 4.98 29.85 0.15 1.24 16 10 C -0.59 -22.17 5.13 71.98 0.37 -21.80 16 11 S 2.62 94.57 5.44 -56.49 -0.31 94.26 16 12 O -1.00 -42.49 18.08 -127.65 -2.31 -44.80 16 13 O -1.00 -42.74 17.40 -127.65 -2.22 -44.96 16 14 N -1.10 -27.00 5.36 -169.39 -0.91 -27.91 16 15 C 0.14 3.02 2.68 44.99 0.12 3.14 16 16 H 0.08 1.90 7.49 -2.39 -0.02 1.89 16 17 C -0.15 -2.78 5.21 30.60 0.16 -2.62 16 18 C -0.11 -1.83 5.45 30.60 0.17 -1.66 16 19 C -0.08 -1.05 2.46 -10.80 -0.03 -1.07 16 20 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 21 C -0.12 -1.44 4.59 30.59 0.14 -1.30 16 22 C -0.12 -1.26 5.92 30.60 0.18 -1.08 16 23 C -0.12 -1.37 5.65 30.60 0.17 -1.20 16 24 C -0.11 -1.37 5.45 30.61 0.17 -1.21 16 25 C -0.08 -1.20 2.47 -10.76 -0.03 -1.23 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 C -0.11 -1.93 4.12 30.61 0.13 -1.80 16 28 H 0.27 15.25 8.31 -92.70 -0.77 14.48 16 29 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.14 4.68 6.76 -2.40 -0.02 4.67 16 32 H 0.14 4.72 8.14 -2.39 -0.02 4.71 16 33 H 0.42 8.33 8.80 -96.74 -0.85 7.48 16 34 H 0.09 1.38 6.43 -2.38 -0.02 1.37 16 35 H 0.06 1.34 5.74 -2.38 -0.01 1.32 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.07 0.86 4.81 -2.38 -0.01 0.85 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.06 0.74 6.43 -2.38 -0.02 0.73 16 43 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.07 0.77 8.14 -2.38 -0.02 0.76 16 46 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.09 1.26 4.81 -2.38 -0.01 1.24 16 Total: -1.00 -73.92 360.40 -0.94 -74.85 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.10 Total: 20.03 kcal Atomic # 6 Polarization: -62.23 SS G_CDS: 2.39 Total: -59.84 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -0.62 Total: -84.79 kcal Atomic # 8 Polarization: -85.23 SS G_CDS: -4.53 Total: -89.76 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 94.57 SS G_CDS: -0.31 Total: 94.26 kcal Total: -73.92 -0.94 -74.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408129025.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.271 kcal (2) G-P(sol) polarization free energy of solvation -73.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds