Wall clock time and date at job start Tue Mar 31 2020 11:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99627 * 2 1 4 4 H 1.48505 * 109.47219 * 239.99916 * 3 2 1 5 5 H 1.48498 * 109.47525 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47411 * 119.99845 * 3 2 1 7 7 C 1.37872 * 120.00379 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00388 * 175.50595 * 7 2 1 9 9 C 1.50707 * 119.99781 * 355.78592 * 7 2 1 10 10 C 1.53000 * 115.55000 * 35.31702 * 9 7 2 11 11 N 1.46494 * 109.46963 * 54.23922 * 10 9 7 12 12 C 1.34785 * 119.99786 * 184.99564 * 11 10 9 13 13 O 1.21587 * 119.99842 * 5.07281 * 12 11 10 14 14 C 1.47542 * 119.99673 * 185.07506 * 12 11 10 15 15 C 1.40349 * 120.46917 * 185.14331 * 14 12 11 16 16 C 1.36863 * 118.49130 * 179.97438 * 15 14 12 17 17 C 1.39397 * 119.37785 * 0.02562 * 16 15 14 18 18 N 1.38457 * 119.53764 * 179.97438 * 17 16 15 19 19 C 1.48540 * 110.99893 * 62.60072 * 18 17 16 20 20 C 1.54938 * 103.22356 * 159.71962 * 19 18 17 21 21 C 1.54590 * 102.92390 * 322.58402 * 20 19 18 22 22 C 1.47897 * 110.99949 * 179.97438 * 18 17 16 23 23 N 1.32599 * 120.92214 * 359.97438 * 17 16 15 24 24 C 1.31677 * 121.63710 * 359.72989 * 23 17 16 25 25 C 1.52995 * 117.49737 * 249.64575 * 9 7 2 26 26 C 1.52998 * 117.49559 * 180.98541 * 9 7 2 27 27 H 0.96993 * 120.00183 * 5.00210 * 1 2 3 28 28 H 1.08994 * 109.47048 * 174.23750 * 10 9 7 29 29 H 1.08997 * 109.46987 * 294.23677 * 10 9 7 30 30 H 0.97006 * 120.00524 * 4.99564 * 11 10 9 31 31 H 1.07999 * 120.75886 * 359.95199 * 15 14 12 32 32 H 1.08003 * 120.30712 * 179.97438 * 16 15 14 33 33 H 1.09002 * 110.66544 * 278.15353 * 19 18 17 34 34 H 1.08995 * 110.67133 * 41.28760 * 19 18 17 35 35 H 1.09000 * 110.72467 * 204.22399 * 20 19 18 36 36 H 1.09007 * 110.87528 * 81.01535 * 20 19 18 37 37 H 1.08998 * 110.31182 * 263.04200 * 21 20 19 38 38 H 1.09005 * 110.30845 * 140.87231 * 21 20 19 39 39 H 1.09004 * 109.91764 * 333.50712 * 22 18 17 40 40 H 1.08997 * 109.91862 * 94.80302 * 22 18 17 41 41 H 1.07999 * 119.73900 * 180.26744 * 24 23 17 42 42 H 1.09001 * 117.49865 * 359.97438 * 25 9 7 43 43 H 1.08998 * 117.50267 * 145.02179 * 25 9 7 44 44 H 1.08997 * 117.49995 * 214.97604 * 26 9 7 45 45 H 1.09000 * 117.50630 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0821 -1.1954 -0.0727 9 6 1.2542 -2.4973 0.0970 10 6 -0.0993 -2.5338 -0.6154 11 7 0.0750 -2.1393 -2.0154 12 6 -1.0008 -2.0008 -2.8155 13 8 -2.1201 -2.1126 -2.3540 14 6 -0.8201 -1.7135 -4.2514 15 6 -1.9304 -1.4610 -5.0719 16 6 -1.7161 -1.1986 -6.3979 17 6 -0.4125 -1.1903 -6.8913 18 7 -0.1919 -0.9257 -8.2324 19 6 -0.6480 0.4427 -8.5870 20 6 0.1255 0.7463 -9.8948 21 6 1.5032 0.0925 -9.6413 22 6 1.2521 -0.9638 -8.5496 23 7 0.6193 -1.4321 -6.0944 24 6 0.4575 -1.6833 -4.8119 25 6 1.3917 -3.2973 1.3939 26 6 2.0775 -3.7868 0.1160 27 1 -0.4850 0.8368 -0.0732 28 1 -0.5064 -3.5439 -0.5706 29 1 -0.7861 -1.8432 -0.1261 30 1 0.9647 -1.9777 -2.3667 31 1 -2.9313 -1.4739 -4.6662 32 1 -2.5494 -1.0007 -7.0559 33 1 -1.7234 0.4559 -8.7642 34 1 -0.3770 1.1531 -7.8061 35 1 0.2297 1.8215 -10.0405 36 1 -0.3670 0.2882 -10.7526 37 1 2.2167 0.8376 -9.2896 38 1 1.8693 -0.3832 -10.5512 39 1 1.8343 -0.7238 -7.6598 40 1 1.5251 -1.9520 -8.9197 41 1 1.3201 -1.8719 -4.1900 42 1 2.0252 -2.8811 2.1772 43 1 0.5180 -3.8499 1.7395 44 1 1.6548 -4.6612 -0.3787 45 1 3.1619 -3.6925 0.0582 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435958634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:24 Heat of formation + Delta-G solvation = 27.188591 kcal Electronic energy + Delta-G solvation = -26100.450280 eV Core-core repulsion = 22504.313776 eV Total energy + Delta-G solvation = -3596.136505 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.98716 -40.47713 -39.05014 -38.32744 -34.92991 -34.16108 -33.90666 -33.49199 -30.53385 -29.91478 -27.83282 -27.15615 -24.95274 -24.63610 -22.98292 -22.45812 -21.56280 -21.28455 -21.09283 -19.24445 -18.46967 -18.01100 -17.53852 -16.82206 -16.73392 -16.20554 -16.00130 -15.88908 -15.57743 -15.41928 -14.87645 -14.71719 -14.57174 -14.09733 -13.98280 -13.69580 -13.59239 -13.33430 -13.24274 -13.07692 -12.89335 -12.60915 -12.31870 -12.26166 -12.11664 -12.02998 -11.58877 -11.45885 -11.17783 -11.02163 -10.92466 -10.83563 -10.65899 -10.45465 -10.14664 -9.70970 -9.23079 -7.93673 -6.20022 -0.38092 0.19519 1.41219 1.44714 1.50188 1.91408 2.39402 2.43184 2.55906 2.85600 3.07503 3.25204 3.61965 3.64279 3.77650 3.83217 3.91303 4.02558 4.08222 4.19360 4.28300 4.32877 4.52922 4.54626 4.58049 4.68038 4.75743 4.80447 4.82015 4.90732 4.97508 4.98018 5.00296 5.07848 5.14353 5.17250 5.26783 5.33062 5.34330 5.53952 5.57466 5.61012 5.85724 5.99850 6.00864 6.37321 6.74488 6.77520 6.93874 7.45162 7.47603 8.91356 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.003538 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.736010 B = 7911.143618 C = 8574.699597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.038 3.962 3 Si 0.944 3.056 4 H -0.269 1.269 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.505 4.505 8 H 0.059 0.941 9 C 0.007 3.993 10 C 0.175 3.825 11 N -0.671 5.671 12 C 0.552 3.448 13 O -0.596 6.596 14 C -0.217 4.217 15 C -0.007 4.007 16 C -0.177 4.177 17 C 0.313 3.687 18 N -0.465 5.465 19 C 0.038 3.962 20 C -0.116 4.116 21 C -0.129 4.129 22 C 0.029 3.971 23 N -0.531 5.531 24 C 0.161 3.839 25 C -0.199 4.199 26 C -0.186 4.186 27 H 0.256 0.744 28 H 0.020 0.980 29 H 0.082 0.918 30 H 0.401 0.599 31 H 0.148 0.852 32 H 0.170 0.830 33 H 0.108 0.892 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.168 0.832 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 0.844 -19.835 19.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.164 4.164 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.006 3.994 10 C 0.051 3.949 11 N -0.317 5.317 12 C 0.339 3.661 13 O -0.479 6.479 14 C -0.223 4.223 15 C -0.033 4.033 16 C -0.199 4.199 17 C 0.080 3.920 18 N -0.183 5.183 19 C -0.087 4.087 20 C -0.154 4.154 21 C -0.167 4.167 22 C -0.098 4.098 23 N -0.246 5.246 24 C 0.002 3.998 25 C -0.238 4.238 26 C -0.223 4.223 27 H 0.065 0.935 28 H 0.038 0.962 29 H 0.100 0.900 30 H 0.237 0.763 31 H 0.166 0.834 32 H 0.187 0.813 33 H 0.126 0.874 34 H 0.065 0.935 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.185 0.815 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.260 0.514 -20.119 20.127 hybrid contribution 0.333 1.180 1.377 1.844 sum 0.594 1.694 -18.742 18.827 Atomic orbital electron populations 1.70040 1.06703 1.26657 1.49073 1.25554 0.95296 1.01480 0.94107 0.85827 0.78392 0.79828 0.78869 1.19414 1.21972 1.19964 1.20677 0.92731 0.89509 1.51348 0.92255 1.19265 0.93265 0.90674 0.96166 1.20787 0.97829 0.95619 0.80652 1.45463 1.08576 1.66490 1.11185 1.18251 0.84568 0.77059 0.86214 1.90665 1.25521 1.54662 1.77091 1.20912 0.96455 1.10628 0.94333 1.21417 0.99201 0.89961 0.92744 1.21453 0.97252 1.05635 0.95600 1.20454 0.89968 0.91981 0.89588 1.61848 1.18299 1.27348 1.10765 1.23509 1.02409 0.84877 0.97912 1.22532 0.94524 1.02043 0.96303 1.22452 0.98160 0.97461 0.98655 1.22952 0.86234 1.01133 0.99467 1.67665 1.34138 1.17748 1.05001 1.22909 0.95723 0.90595 0.90529 1.22962 1.02241 1.06195 0.92389 1.22960 0.98647 0.98725 1.01962 0.93463 0.96204 0.89986 0.76275 0.83447 0.81266 0.87376 0.93527 0.88828 0.89282 0.90859 0.89298 0.91580 0.90255 0.81480 0.90468 0.90544 0.89631 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.29 10.11 21.45 0.22 -48.08 16 2 C 0.04 1.91 5.31 84.65 0.45 2.36 16 3 Si 0.94 41.40 29.54 68.60 2.03 43.42 16 4 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.51 -25.23 8.43 25.60 0.22 -25.02 16 8 H 0.06 2.92 7.82 -2.91 -0.02 2.90 16 9 C 0.01 0.32 2.04 -52.93 -0.11 0.21 16 10 C 0.17 8.36 4.62 86.38 0.40 8.75 16 11 N -0.67 -29.18 4.97 -466.28 -2.32 -31.49 16 12 C 0.55 23.97 7.76 86.70 0.67 24.64 16 13 O -0.60 -29.91 16.40 -3.99 -0.07 -29.97 16 14 C -0.22 -7.65 5.89 -19.99 -0.12 -7.77 16 15 C -0.01 -0.21 9.65 22.46 0.22 0.01 16 16 C -0.18 -4.38 9.38 22.23 0.21 -4.17 16 17 C 0.31 8.25 6.20 133.25 0.83 9.07 16 18 N -0.46 -9.88 5.28 -689.50 -3.64 -13.52 16 19 C 0.04 0.59 6.03 86.65 0.52 1.11 16 20 C -0.12 -1.30 7.06 31.80 0.22 -1.07 16 21 C -0.13 -1.73 6.93 31.46 0.22 -1.51 16 22 C 0.03 0.58 6.34 86.44 0.55 1.13 16 23 N -0.53 -15.87 8.10 -192.33 -1.56 -17.43 16 24 C 0.16 5.14 10.69 85.03 0.91 6.04 16 25 C -0.20 -8.42 9.96 30.62 0.30 -8.12 16 26 C -0.19 -7.26 9.92 30.62 0.30 -6.96 16 27 H 0.26 13.86 8.32 -92.71 -0.77 13.09 16 28 H 0.02 0.92 8.09 -2.39 -0.02 0.91 16 29 H 0.08 4.59 5.89 -2.39 -0.01 4.57 16 30 H 0.40 16.25 6.23 -92.70 -0.58 15.67 16 31 H 0.15 4.37 7.73 -2.91 -0.02 4.35 16 32 H 0.17 3.03 8.02 -2.91 -0.02 3.00 16 33 H 0.11 1.32 8.11 -2.39 -0.02 1.30 16 34 H 0.05 0.85 7.99 -2.39 -0.02 0.83 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.07 1.59 6.48 -2.38 -0.02 1.58 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.17 4.98 6.48 -2.91 -0.02 4.97 16 42 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 43 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 44 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 45 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -62.83 366.36 0.88 -61.95 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: 0.42 Total: 36.40 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 5.79 Total: -1.28 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -7.30 Total: -110.52 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.07 Total: -29.97 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -62.83 0.88 -61.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435958634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.143 kcal (2) G-P(sol) polarization free energy of solvation -62.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds