Wall clock time and date at job start Tue Mar 31 2020 10:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86795 * 120.00272 * 2 1 4 4 H 1.48506 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47341 * 300.00560 * 3 2 1 6 6 H 1.48501 * 109.47024 * 60.00430 * 3 2 1 7 7 C 1.39936 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99980 * 196.80518 * 7 2 1 9 9 C 1.41413 * 120.00049 * 16.79654 * 7 2 1 10 10 C 1.40783 * 120.20571 * 25.17586 * 9 7 2 11 11 C 1.37642 * 119.87851 * 179.97438 * 10 9 7 12 12 C 1.38526 * 120.32824 * 0.02562 * 11 10 9 13 13 C 1.39249 * 120.42726 * 0.02562 * 12 11 10 14 14 N 1.39936 * 119.95169 * 179.97438 * 13 12 11 15 15 C 1.34771 * 120.00218 * 145.78679 * 14 13 12 16 16 O 1.21288 * 120.00234 * 354.89954 * 15 14 13 17 17 C 1.50701 * 120.00045 * 174.89749 * 15 14 13 18 18 H 1.08998 * 109.45599 * 60.02586 * 17 15 14 19 19 C 1.52850 * 109.45896 * 300.05261 * 17 15 14 20 20 N 1.47399 * 109.87025 * 227.41550 * 19 17 15 21 21 C 1.43340 * 113.76498 * 312.57469 * 20 19 17 22 22 C 1.53512 * 111.28758 * 57.48894 * 21 20 19 23 23 N 1.44566 * 109.41769 * 355.37273 * 22 21 20 24 24 C 1.43883 * 117.17352 * 78.37434 * 23 22 21 25 25 C 1.52294 * 112.86186 * 263.16133 * 24 23 22 26 26 C 1.44131 * 109.47908 * 88.78922 * 20 19 17 27 27 C 1.38287 * 120.10499 * 0.23636 * 13 12 11 28 28 H 0.97009 * 119.99727 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.05781 * 359.97438 * 10 9 7 30 30 H 1.08008 * 119.83406 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.78794 * 179.97438 * 12 11 10 32 32 H 0.97007 * 119.99344 * 325.79612 * 14 13 12 33 33 H 1.08999 * 109.39881 * 107.29625 * 19 17 15 34 34 H 1.08995 * 109.34042 * 347.50048 * 19 17 15 35 35 H 1.08997 * 109.11348 * 297.02921 * 21 20 19 36 36 H 1.08997 * 109.07261 * 177.92301 * 21 20 19 37 37 H 1.09001 * 109.47868 * 235.38756 * 22 21 20 38 38 H 1.08992 * 109.48935 * 115.36085 * 22 21 20 39 39 H 1.08996 * 108.80100 * 24.03243 * 24 23 22 40 40 H 1.08997 * 108.80465 * 142.29071 * 24 23 22 41 41 H 1.09001 * 110.01917 * 181.01255 * 25 24 23 42 42 H 1.09005 * 110.01721 * 302.46293 * 25 24 23 43 43 H 1.09006 * 109.35010 * 84.67557 * 26 20 19 44 44 H 1.09001 * 109.34816 * 204.36985 * 26 20 19 45 45 H 1.07995 * 120.15986 * 179.73912 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3462 -0.0006 5 1 1.8836 2.3965 -1.2124 6 1 1.8837 2.3963 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0533 -1.2320 0.2699 9 6 1.3461 -2.4103 -0.3550 10 6 0.2109 -2.3731 -1.1868 11 6 -0.4278 -3.5437 -1.5280 12 6 0.0405 -4.7591 -1.0564 13 6 1.1615 -4.8111 -0.2320 14 7 1.6257 -6.0443 0.2391 15 6 2.9471 -6.2463 0.4103 16 8 3.7400 -5.3940 0.0695 17 6 3.4397 -7.5309 1.0251 18 1 3.1223 -8.3729 0.4100 19 6 2.8572 -7.6789 2.4305 20 7 3.9234 -8.0498 3.3783 21 6 4.7592 -9.1194 2.9178 22 6 5.4128 -8.7761 1.5718 23 7 4.9068 -7.5061 1.1018 24 6 5.4558 -6.3181 1.6998 25 6 4.5909 -5.7689 2.8266 26 6 4.5346 -6.8557 3.9055 27 6 1.8136 -3.6455 0.1263 28 1 -0.4850 0.8401 0.0004 29 1 -0.1581 -1.4279 -1.5565 30 1 -1.2989 -3.5143 -2.1659 31 1 -0.4676 -5.6722 -1.3293 32 1 0.9962 -6.7539 0.4423 33 1 2.0915 -8.4546 2.4253 34 1 2.4121 -6.7328 2.7383 35 1 4.1556 -10.0196 2.8021 36 1 5.5392 -9.3052 3.6562 37 1 5.1770 -9.5530 0.8446 38 1 6.4935 -8.7124 1.6981 39 1 6.4444 -6.5491 2.0963 40 1 5.5581 -5.5527 0.9305 41 1 5.0391 -4.8623 3.2331 42 1 3.5873 -5.5573 2.4575 43 1 3.9502 -6.4944 4.7518 44 1 5.5472 -7.0847 4.2376 45 1 2.6806 -3.6845 0.7691 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456727688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:36 Heat of formation + Delta-G solvation = 28.913677 kcal Electronic energy + Delta-G solvation = -27351.416290 eV Core-core repulsion = 23755.354591 eV Total energy + Delta-G solvation = -3596.061699 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.68005 -39.11538 -37.07138 -34.70127 -34.15116 -33.24686 -32.94249 -31.56646 -29.81929 -28.08929 -25.87067 -25.73929 -25.27229 -24.38942 -21.87116 -20.98883 -20.41843 -19.80823 -19.00149 -17.84978 -17.60241 -16.61545 -16.05778 -15.56102 -15.45527 -14.93116 -14.72592 -14.56426 -14.22051 -13.71268 -13.38064 -13.35994 -13.26542 -12.94930 -12.82873 -12.41891 -12.24720 -12.03936 -11.81079 -11.66868 -11.64386 -11.33188 -11.16164 -11.11035 -10.90274 -10.75447 -10.55560 -10.45012 -10.06614 -9.64697 -9.31751 -9.05311 -8.93564 -8.64599 -7.68667 -7.44471 -6.91120 -6.71014 -4.33444 2.59338 2.83114 3.09933 3.16449 3.19482 3.29050 3.42304 3.64267 3.96816 4.09059 4.51480 4.64296 4.68355 4.72056 4.89470 4.98040 5.15013 5.18142 5.30490 5.39860 5.42665 5.47980 5.59622 5.69079 5.71452 5.73125 5.79297 5.91841 6.13170 6.24893 6.37146 6.40530 6.75903 6.81468 7.00360 7.03831 7.06654 7.11579 7.25371 7.28408 7.42826 7.58505 7.73203 7.97998 8.09797 8.18372 8.27952 8.63788 8.75578 8.94710 8.99274 10.21908 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018682 B = 0.003834 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.402730 B = 7301.672320 C = 8187.221672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.906 3.094 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.458 4.458 8 H 0.078 0.922 9 C 0.120 3.880 10 C -0.171 4.171 11 C -0.093 4.093 12 C -0.261 4.261 13 C 0.154 3.846 14 N -0.669 5.669 15 C 0.510 3.490 16 O -0.499 6.499 17 C 0.056 3.944 18 H 0.105 0.895 19 C 0.039 3.961 20 N -0.570 5.570 21 C 0.047 3.953 22 C 0.041 3.959 23 N -0.554 5.554 24 C 0.080 3.920 25 C -0.187 4.187 26 C 0.074 3.926 27 C -0.210 4.210 28 H 0.279 0.721 29 H 0.119 0.881 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.397 0.603 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.062 0.938 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.712 -14.920 5.759 16.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.117 3.883 10 C -0.191 4.191 11 C -0.112 4.112 12 C -0.283 4.283 13 C 0.062 3.938 14 N -0.313 5.313 15 C 0.296 3.704 16 O -0.372 6.372 17 C -0.057 4.057 18 H 0.122 0.878 19 C -0.091 4.091 20 N -0.292 5.292 21 C -0.083 4.083 22 C -0.089 4.089 23 N -0.276 5.276 24 C -0.047 4.047 25 C -0.227 4.227 26 C -0.054 4.054 27 C -0.231 4.231 28 H 0.090 0.910 29 H 0.136 0.864 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.231 0.769 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.164 -14.305 5.520 16.526 hybrid contribution 0.046 0.608 0.247 0.658 sum 6.210 -13.697 5.767 16.107 Atomic orbital electron populations 1.69836 1.07523 1.28986 1.35747 1.25890 0.94719 1.01237 0.92258 0.86291 0.81123 0.81006 0.78497 1.18373 1.19706 1.20037 1.19600 0.97752 0.90958 1.40461 0.90407 1.17488 0.90858 0.91644 0.88307 1.21349 0.99366 0.96849 1.01548 1.20462 0.98516 0.92730 0.99450 1.20043 1.02487 0.96876 1.08849 1.17412 0.96066 0.83288 0.97031 1.43455 1.06866 1.15186 1.65832 1.20286 0.82466 0.88413 0.79283 1.90714 1.53890 1.44952 1.47628 1.21991 0.88855 0.97400 0.97491 0.87761 1.22740 0.94091 1.02632 0.89590 1.57383 1.18746 1.12188 1.40843 1.22012 0.96258 0.93462 0.96597 1.22460 0.99727 0.90695 0.96056 1.57207 1.05879 1.02406 1.62141 1.21361 0.95625 0.91461 0.96219 1.23002 1.02717 0.99476 0.97504 1.21660 0.98746 0.87986 0.96980 1.20924 1.04298 0.90956 1.06924 0.91018 0.86356 0.89089 0.89324 0.76948 0.90105 0.89537 0.90576 0.90937 0.90487 0.90718 0.92742 0.88351 0.90282 0.90290 0.91078 0.91904 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.68 10.94 55.55 0.61 -20.08 16 2 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 3 Si 0.91 19.09 29.59 -169.99 -5.03 14.06 16 4 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.46 -12.53 9.05 -37.74 -0.34 -12.87 16 8 H 0.08 2.11 7.90 -52.49 -0.41 1.69 16 9 C 0.12 3.28 5.57 -106.85 -0.59 2.69 16 10 C -0.17 -4.50 8.69 -38.84 -0.34 -4.83 16 11 C -0.09 -2.16 10.01 -39.69 -0.40 -2.56 16 12 C -0.26 -5.71 9.97 -39.10 -0.39 -6.10 16 13 C 0.15 3.42 6.25 -83.76 -0.52 2.89 16 14 N -0.67 -11.54 5.21 -9.91 -0.05 -11.60 16 15 C 0.51 8.80 5.00 -10.99 -0.05 8.75 16 16 O -0.50 -10.68 10.99 5.55 0.06 -10.62 16 17 C 0.06 0.73 2.69 -68.92 -0.19 0.54 16 18 H 0.10 1.17 8.12 -51.93 -0.42 0.75 16 19 C 0.04 0.45 5.31 -3.63 -0.02 0.43 16 20 N -0.57 -6.30 4.36 -239.00 -1.04 -7.34 16 21 C 0.05 0.43 6.04 -5.45 -0.03 0.40 16 22 C 0.04 0.40 6.10 -4.81 -0.03 0.37 16 23 N -0.55 -7.34 4.11 -232.64 -0.96 -8.30 16 24 C 0.08 1.14 4.76 -5.79 -0.03 1.12 16 25 C -0.19 -2.59 5.49 -26.97 -0.15 -2.74 16 26 C 0.07 0.85 5.80 -5.18 -0.03 0.82 16 27 C -0.21 -5.34 8.39 -38.68 -0.32 -5.66 16 28 H 0.28 6.57 8.30 -40.82 -0.34 6.24 16 29 H 0.12 3.19 6.17 -52.49 -0.32 2.87 16 30 H 0.09 1.88 8.06 -52.48 -0.42 1.45 16 31 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.40 5.32 8.79 -40.82 -0.36 4.96 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.15 5.84 -51.93 -0.30 0.84 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.60 8.02 -51.93 -0.42 0.18 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.69 7.82 -51.93 -0.41 0.29 16 39 H 0.05 0.69 7.64 -51.93 -0.40 0.29 16 40 H 0.10 1.74 6.26 -51.93 -0.33 1.41 16 41 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 1.29 3.91 -51.93 -0.20 1.09 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.66 7.85 -51.93 -0.41 0.25 16 45 H 0.10 2.71 6.48 -52.49 -0.34 2.36 16 LS Contribution 340.71 15.07 5.13 5.13 Total: -1.00 -30.20 340.71 -11.21 -41.41 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -6.41 Total: 12.22 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -3.53 Total: -14.90 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -1.44 Total: -47.31 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.06 Total: -10.62 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.20 -11.21 -41.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456727688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.327 kcal (2) G-P(sol) polarization free energy of solvation -30.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds