Wall clock time and date at job start Tue Mar 31 2020 10:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86795 * 120.00272 * 2 1 4 4 H 1.48506 * 109.47191 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47341 * 300.00560 * 3 2 1 6 6 H 1.48501 * 109.47024 * 60.00430 * 3 2 1 7 7 C 1.39936 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99980 * 196.80518 * 7 2 1 9 9 C 1.41413 * 120.00049 * 16.79654 * 7 2 1 10 10 C 1.40783 * 120.20571 * 25.17586 * 9 7 2 11 11 C 1.37642 * 119.87851 * 179.97438 * 10 9 7 12 12 C 1.38526 * 120.32824 * 0.02562 * 11 10 9 13 13 C 1.39249 * 120.42726 * 0.02562 * 12 11 10 14 14 N 1.39936 * 119.95169 * 179.97438 * 13 12 11 15 15 C 1.34771 * 120.00218 * 145.78679 * 14 13 12 16 16 O 1.21288 * 120.00234 * 354.89954 * 15 14 13 17 17 C 1.50701 * 120.00045 * 174.89749 * 15 14 13 18 18 H 1.08998 * 109.45599 * 60.02586 * 17 15 14 19 19 C 1.52850 * 109.45896 * 300.05261 * 17 15 14 20 20 N 1.47399 * 109.87025 * 227.41550 * 19 17 15 21 21 C 1.43340 * 113.76498 * 312.57469 * 20 19 17 22 22 C 1.53512 * 111.28758 * 57.48894 * 21 20 19 23 23 N 1.44566 * 109.41769 * 355.37273 * 22 21 20 24 24 C 1.43883 * 117.17352 * 78.37434 * 23 22 21 25 25 C 1.52294 * 112.86186 * 263.16133 * 24 23 22 26 26 C 1.44131 * 109.47908 * 88.78922 * 20 19 17 27 27 C 1.38287 * 120.10499 * 0.23636 * 13 12 11 28 28 H 0.97009 * 119.99727 * 359.97438 * 1 2 3 29 29 H 1.07995 * 120.05781 * 359.97438 * 10 9 7 30 30 H 1.08008 * 119.83406 * 179.97438 * 11 10 9 31 31 H 1.08001 * 119.78794 * 179.97438 * 12 11 10 32 32 H 0.97007 * 119.99344 * 325.79612 * 14 13 12 33 33 H 1.08999 * 109.39881 * 107.29625 * 19 17 15 34 34 H 1.08995 * 109.34042 * 347.50048 * 19 17 15 35 35 H 1.08997 * 109.11348 * 297.02921 * 21 20 19 36 36 H 1.08997 * 109.07261 * 177.92301 * 21 20 19 37 37 H 1.09001 * 109.47868 * 235.38756 * 22 21 20 38 38 H 1.08992 * 109.48935 * 115.36085 * 22 21 20 39 39 H 1.08996 * 108.80100 * 24.03243 * 24 23 22 40 40 H 1.08997 * 108.80465 * 142.29071 * 24 23 22 41 41 H 1.09001 * 110.01917 * 181.01255 * 25 24 23 42 42 H 1.09005 * 110.01721 * 302.46293 * 25 24 23 43 43 H 1.09006 * 109.35010 * 84.67557 * 26 20 19 44 44 H 1.09001 * 109.34816 * 204.36985 * 26 20 19 45 45 H 1.07995 * 120.15986 * 179.73912 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3462 -0.0006 5 1 1.8836 2.3965 -1.2124 6 1 1.8837 2.3963 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0533 -1.2320 0.2699 9 6 1.3461 -2.4103 -0.3550 10 6 0.2109 -2.3731 -1.1868 11 6 -0.4278 -3.5437 -1.5280 12 6 0.0405 -4.7591 -1.0564 13 6 1.1615 -4.8111 -0.2320 14 7 1.6257 -6.0443 0.2391 15 6 2.9471 -6.2463 0.4103 16 8 3.7400 -5.3940 0.0695 17 6 3.4397 -7.5309 1.0251 18 1 3.1223 -8.3729 0.4100 19 6 2.8572 -7.6789 2.4305 20 7 3.9234 -8.0498 3.3783 21 6 4.7592 -9.1194 2.9178 22 6 5.4128 -8.7761 1.5718 23 7 4.9068 -7.5061 1.1018 24 6 5.4558 -6.3181 1.6998 25 6 4.5909 -5.7689 2.8266 26 6 4.5346 -6.8557 3.9055 27 6 1.8136 -3.6455 0.1263 28 1 -0.4850 0.8401 0.0004 29 1 -0.1581 -1.4279 -1.5565 30 1 -1.2989 -3.5143 -2.1659 31 1 -0.4676 -5.6722 -1.3293 32 1 0.9962 -6.7539 0.4423 33 1 2.0915 -8.4546 2.4253 34 1 2.4121 -6.7328 2.7383 35 1 4.1556 -10.0196 2.8021 36 1 5.5392 -9.3052 3.6562 37 1 5.1770 -9.5530 0.8446 38 1 6.4935 -8.7124 1.6981 39 1 6.4444 -6.5491 2.0963 40 1 5.5581 -5.5527 0.9305 41 1 5.0391 -4.8623 3.2331 42 1 3.5873 -5.5573 2.4575 43 1 3.9502 -6.4944 4.7518 44 1 5.5472 -7.0847 4.2376 45 1 2.6806 -3.6845 0.7691 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456727688.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:35 Heat of formation + Delta-G solvation = 7.654827 kcal Electronic energy + Delta-G solvation = -27352.338143 eV Core-core repulsion = 23755.354591 eV Total energy + Delta-G solvation = -3596.983552 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.75194 -40.57739 -38.81229 -36.28458 -35.27367 -34.89980 -34.03278 -32.67361 -31.75757 -29.77842 -27.29343 -26.83035 -26.70833 -25.40689 -23.40064 -22.77366 -21.75090 -21.15291 -20.06112 -19.45713 -18.95153 -17.63580 -17.51424 -17.02128 -16.89222 -16.50509 -16.29134 -15.96304 -15.38291 -15.01151 -14.78846 -14.68628 -14.39420 -14.24656 -14.10298 -13.87335 -13.55323 -13.42817 -13.17029 -13.02331 -12.90400 -12.80770 -12.79511 -12.66314 -12.24316 -12.19575 -11.89214 -11.64470 -11.51523 -11.48774 -11.11857 -10.81156 -10.50554 -9.63894 -9.39811 -8.76164 -8.64761 -8.58616 -6.38097 0.86771 0.99581 1.34222 1.45081 1.49409 1.80736 2.09234 2.19606 2.64068 2.72505 3.13518 3.52903 3.69035 3.73514 3.76490 3.92635 4.02209 4.18565 4.27297 4.33856 4.38615 4.46547 4.55194 4.60385 4.63347 4.71880 4.83833 4.86881 4.95028 4.97860 5.03614 5.06164 5.10821 5.11485 5.20935 5.26911 5.33741 5.74855 5.83628 5.89341 6.07512 6.10649 6.15032 6.33272 6.34709 6.54322 6.66754 6.70223 6.93104 7.00623 7.36938 8.31995 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018682 B = 0.003834 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.402730 B = 7301.672320 C = 8187.221672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.040 3.960 3 Si 0.979 3.021 4 H -0.267 1.267 5 H -0.259 1.259 6 H -0.261 1.261 7 C -0.502 4.502 8 H 0.060 0.940 9 C 0.089 3.911 10 C -0.199 4.199 11 C -0.092 4.092 12 C -0.251 4.251 13 C 0.162 3.838 14 N -0.658 5.658 15 C 0.506 3.494 16 O -0.546 6.546 17 C 0.068 3.932 18 H 0.135 0.865 19 C 0.045 3.955 20 N -0.569 5.569 21 C 0.047 3.953 22 C 0.041 3.959 23 N -0.571 5.571 24 C 0.090 3.910 25 C -0.184 4.184 26 C 0.082 3.918 27 C -0.233 4.233 28 H 0.289 0.711 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.132 0.868 32 H 0.419 0.581 33 H 0.112 0.888 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.050 0.950 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.244 -17.903 6.183 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.175 4.175 3 Si 0.799 3.201 4 H -0.191 1.191 5 H -0.183 1.183 6 H -0.185 1.185 7 C -0.532 4.532 8 H 0.078 0.922 9 C 0.087 3.913 10 C -0.219 4.219 11 C -0.111 4.111 12 C -0.272 4.272 13 C 0.068 3.932 14 N -0.305 5.305 15 C 0.294 3.706 16 O -0.422 6.422 17 C -0.045 4.045 18 H 0.153 0.847 19 C -0.085 4.085 20 N -0.290 5.290 21 C -0.082 4.082 22 C -0.088 4.088 23 N -0.294 5.294 24 C -0.038 4.038 25 C -0.225 4.225 26 C -0.046 4.046 27 C -0.255 4.255 28 H 0.100 0.900 29 H 0.121 0.879 30 H 0.140 0.860 31 H 0.150 0.850 32 H 0.257 0.743 33 H 0.130 0.870 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.671 -17.359 5.960 19.210 hybrid contribution 0.191 1.388 0.093 1.404 sum 5.862 -15.971 6.053 18.058 Atomic orbital electron populations 1.69863 1.08672 1.30446 1.35793 1.26654 0.95563 1.04102 0.91207 0.85224 0.79069 0.76424 0.79361 1.19079 1.18289 1.18539 1.19729 0.97364 0.92782 1.43336 0.92197 1.17822 0.91897 0.92414 0.89207 1.21300 1.00105 0.97566 1.02881 1.20836 0.98891 0.92243 0.99093 1.20486 1.01690 0.98010 1.07001 1.17485 0.95439 0.84269 0.95959 1.43354 1.07708 1.14024 1.65375 1.21246 0.81799 0.89514 0.78046 1.90727 1.55053 1.46997 1.49377 1.22028 0.88884 0.95120 0.98512 0.84740 1.22717 0.94795 1.02635 0.88358 1.57499 1.18984 1.11953 1.40568 1.22134 0.96681 0.93184 0.96202 1.22589 1.00152 0.89027 0.97040 1.57139 1.06110 1.03276 1.62856 1.21103 0.96668 0.91213 0.94818 1.22932 1.00853 1.00280 0.98399 1.21577 0.99744 0.87473 0.95822 1.20875 1.04518 0.92181 1.07915 0.90024 0.87904 0.85996 0.85001 0.74271 0.86957 0.91870 0.88453 0.89625 0.88722 0.90090 0.91115 0.92964 0.91297 0.93159 0.91133 0.90361 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.24 10.94 21.82 0.24 -44.00 16 2 C 0.04 2.11 5.16 85.25 0.44 2.55 16 3 Si 0.98 40.57 29.59 68.60 2.03 42.60 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.50 -29.50 9.05 23.46 0.21 -29.29 16 8 H 0.06 3.56 7.90 -2.91 -0.02 3.54 16 9 C 0.09 5.19 5.57 -21.31 -0.12 5.07 16 10 C -0.20 -10.80 8.69 22.75 0.20 -10.60 16 11 C -0.09 -4.22 10.01 22.20 0.22 -4.00 16 12 C -0.25 -10.51 9.97 22.58 0.23 -10.28 16 13 C 0.16 7.23 6.25 38.10 0.24 7.46 16 14 N -0.66 -22.11 5.21 -303.65 -1.58 -23.70 16 15 C 0.51 17.51 5.00 87.66 0.44 17.95 16 16 O -0.55 -24.68 10.99 -3.06 -0.03 -24.72 16 17 C 0.07 1.61 2.69 44.11 0.12 1.73 16 18 H 0.14 2.45 8.12 -2.39 -0.02 2.43 16 19 C 0.04 0.91 5.31 86.16 0.46 1.37 16 20 N -0.57 -10.87 4.36 -910.07 -3.97 -14.84 16 21 C 0.05 0.66 6.04 87.14 0.53 1.19 16 22 C 0.04 0.67 6.10 86.91 0.53 1.20 16 23 N -0.57 -14.30 4.11 -889.94 -3.66 -17.96 16 24 C 0.09 2.61 4.76 86.63 0.41 3.03 16 25 C -0.18 -5.31 5.49 30.44 0.17 -5.14 16 26 C 0.08 1.78 5.80 86.90 0.50 2.28 16 27 C -0.23 -12.59 8.39 22.85 0.19 -12.40 16 28 H 0.29 13.90 8.30 -92.70 -0.77 13.13 16 29 H 0.10 5.81 6.17 -2.91 -0.02 5.79 16 30 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 31 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 32 H 0.42 10.11 8.79 -92.70 -0.82 9.29 16 33 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.62 5.84 -2.39 -0.01 1.61 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.03 8.02 -2.39 -0.02 1.01 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.24 7.82 -2.39 -0.02 1.22 16 39 H 0.07 1.77 7.64 -2.39 -0.02 1.75 16 40 H 0.05 2.01 6.26 -2.39 -0.01 1.99 16 41 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.05 1.75 3.91 -2.38 -0.01 1.74 16 43 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.08 1.47 7.85 -2.39 -0.02 1.45 16 45 H 0.08 4.68 6.48 -2.91 -0.02 4.66 16 Total: -1.00 -71.69 340.71 -2.01 -73.71 By element: Atomic # 1 Polarization: 36.60 SS G_CDS: 0.20 Total: 36.80 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 4.76 Total: -27.90 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -8.97 Total: -100.49 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.03 Total: -24.72 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -71.69 -2.01 -73.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456727688.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.363 kcal (2) G-P(sol) polarization free energy of solvation -71.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds