Wall clock time and date at job start Tue Mar 31 2020 10:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86802 * 119.99759 * 2 1 4 4 H 1.48504 * 109.46649 * 85.03536 * 3 2 1 5 5 H 1.48502 * 109.47213 * 205.02890 * 3 2 1 6 6 H 1.48497 * 109.47359 * 325.03704 * 3 2 1 7 7 C 1.39932 * 120.00409 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99815 * 164.12738 * 7 2 1 9 9 C 1.41404 * 119.99610 * 344.12609 * 7 2 1 10 10 C 1.40773 * 120.21531 * 332.25919 * 9 7 2 11 11 C 1.37637 * 119.88922 * 179.72024 * 10 9 7 12 12 C 1.38530 * 120.31969 * 0.55742 * 11 10 9 13 13 C 1.39250 * 120.43056 * 359.71617 * 12 11 10 14 14 N 1.39935 * 119.94744 * 180.02562 * 13 12 11 15 15 C 1.34770 * 119.99799 * 144.27741 * 14 13 12 16 16 O 1.21288 * 120.00399 * 4.71482 * 15 14 13 17 17 C 1.50708 * 120.00011 * 184.72420 * 15 14 13 18 18 H 1.09002 * 109.10379 * 290.08076 * 17 15 14 19 19 C 1.53500 * 109.11783 * 49.21402 * 17 15 14 20 20 N 1.44454 * 109.48110 * 125.11684 * 19 17 15 21 21 C 1.46927 * 110.60306 * 55.44771 * 20 19 17 22 22 C 1.52836 * 109.52363 * 294.69841 * 21 20 19 23 23 N 1.43338 * 109.11809 * 170.94971 * 17 15 14 24 24 C 1.44131 * 119.24087 * 313.65178 * 23 17 15 25 25 C 1.53242 * 110.22485 * 262.09563 * 24 23 17 26 26 C 1.43878 * 117.13589 * 281.57808 * 20 19 17 27 27 C 1.38283 * 120.10398 * 0.02562 * 13 12 11 28 28 H 0.96996 * 120.00675 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.05254 * 359.96805 * 10 9 7 30 30 H 1.08003 * 119.84091 * 180.25117 * 11 10 9 31 31 H 1.08006 * 119.78389 * 179.69379 * 12 11 10 32 32 H 0.97008 * 120.00230 * 324.27713 * 14 13 12 33 33 H 1.09002 * 109.48029 * 245.07855 * 19 17 15 34 34 H 1.09003 * 109.48215 * 5.10681 * 19 17 15 35 35 H 1.08999 * 109.46071 * 174.67934 * 21 20 19 36 36 H 1.09001 * 109.45124 * 54.71307 * 21 20 19 37 37 H 1.09003 * 109.40666 * 252.43008 * 22 21 20 38 38 H 1.09005 * 109.33658 * 132.64049 * 22 21 20 39 39 H 1.09009 * 109.34528 * 22.32473 * 24 23 17 40 40 H 1.09002 * 109.35154 * 141.85796 * 24 23 17 41 41 H 1.08999 * 110.01316 * 302.33643 * 25 24 23 42 42 H 1.08994 * 110.10459 * 180.93648 * 25 24 23 43 43 H 1.08992 * 108.80576 * 217.70155 * 26 20 19 44 44 H 1.08994 * 108.81176 * 336.07847 * 26 20 19 45 45 H 1.07993 * 120.15861 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3847 2.1070 1.3949 5 1 3.5884 1.4123 -0.5923 6 1 1.4960 2.6202 -0.8023 7 6 2.0080 -1.2118 -0.0005 8 1 3.0572 -1.2294 -0.2564 9 6 1.3414 -2.4132 0.3339 10 6 0.2270 -2.3894 1.1936 11 6 -0.4203 -3.5621 1.5101 12 6 0.0265 -4.7683 0.9958 13 6 1.1310 -4.8080 0.1487 14 7 1.5734 -6.0320 -0.3655 15 6 2.0710 -6.0970 -1.6162 16 8 2.2152 -5.0825 -2.2652 17 6 2.4482 -7.4304 -2.2087 18 1 3.3338 -7.8097 -1.6988 19 6 1.2899 -8.4168 -2.0051 20 7 0.9025 -8.9749 -3.2799 21 6 2.0572 -9.5924 -3.9463 22 6 3.0826 -8.5140 -4.2951 23 7 2.7454 -7.2586 -3.6004 24 6 1.8511 -6.4807 -4.4205 25 6 0.8941 -7.4032 -5.1830 26 6 0.0851 -8.1549 -4.1341 27 6 1.7914 -3.6398 -0.1852 28 1 -0.4851 0.8400 0.0004 29 1 -0.1220 -1.4519 1.6009 30 1 -1.2778 -3.5424 2.1665 31 1 -0.4850 -5.6839 1.2537 32 1 1.5218 -6.8336 0.1784 33 1 1.6085 -9.2193 -1.3397 34 1 0.4408 -7.8945 -1.5641 35 1 1.7272 -10.0887 -4.8589 36 1 2.5126 -10.3244 -3.2792 37 1 3.0780 -8.3446 -5.3719 38 1 4.0739 -8.8446 -3.9849 39 1 1.2745 -5.8065 -3.7869 40 1 2.4319 -5.8946 -5.1327 41 1 1.4609 -8.1073 -5.7922 42 1 0.2298 -6.8140 -5.8150 43 1 -0.6420 -8.7900 -4.6399 44 1 -0.4492 -7.4306 -3.5194 45 1 2.6483 -3.6696 -0.8417 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456727696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:39 Heat of formation + Delta-G solvation = 30.235190 kcal Electronic energy + Delta-G solvation = -27134.780876 eV Core-core repulsion = 23538.776481 eV Total energy + Delta-G solvation = -3596.004394 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.60211 -39.24720 -37.11588 -34.79145 -34.06535 -33.51736 -32.81494 -31.40079 -29.80924 -28.23552 -25.96368 -25.80987 -25.25736 -24.17110 -21.93912 -21.00295 -20.49514 -19.94450 -18.86275 -17.79869 -17.18067 -16.82866 -16.61593 -15.58375 -15.15762 -15.02945 -14.82488 -14.55341 -14.25867 -13.76092 -13.55878 -13.34267 -13.07002 -12.88542 -12.81427 -12.53083 -12.22736 -12.10862 -11.88938 -11.72679 -11.54272 -11.35426 -11.25201 -11.10462 -10.86562 -10.66241 -10.62953 -10.48551 -10.05466 -9.69309 -9.42095 -9.07094 -8.79335 -8.65826 -7.72590 -7.41756 -6.91806 -6.70037 -4.32374 2.60157 2.84933 3.11130 3.15810 3.17392 3.24174 3.42795 3.62757 3.98874 4.05359 4.57654 4.62543 4.66762 4.68584 4.79201 4.95368 5.12884 5.17202 5.28298 5.40264 5.44974 5.47559 5.57582 5.67818 5.69370 5.72158 5.79531 5.84359 5.98102 6.23300 6.26391 6.38965 6.76588 6.83290 7.00894 7.04862 7.09751 7.12077 7.20169 7.25388 7.36338 7.58840 7.74212 7.96446 8.10806 8.17725 8.27132 8.64228 8.73546 8.95567 8.99293 10.25865 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020704 B = 0.003517 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.085865 B = 7958.414080 C = 8575.457426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.262 1.262 6 H -0.278 1.278 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.120 3.880 10 C -0.169 4.169 11 C -0.093 4.093 12 C -0.260 4.260 13 C 0.148 3.852 14 N -0.667 5.667 15 C 0.504 3.496 16 O -0.496 6.496 17 C 0.066 3.934 18 H 0.106 0.894 19 C 0.042 3.958 20 N -0.568 5.568 21 C 0.040 3.960 22 C 0.036 3.964 23 N -0.554 5.554 24 C 0.068 3.932 25 C -0.189 4.189 26 C 0.077 3.923 27 C -0.208 4.208 28 H 0.279 0.721 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.397 0.603 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 -16.751 -5.743 17.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.186 1.186 6 H -0.203 1.203 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.117 3.883 10 C -0.189 4.189 11 C -0.112 4.112 12 C -0.281 4.281 13 C 0.057 3.943 14 N -0.312 5.312 15 C 0.289 3.711 16 O -0.369 6.369 17 C -0.049 4.049 18 H 0.124 0.876 19 C -0.089 4.089 20 N -0.290 5.290 21 C -0.089 4.089 22 C -0.093 4.093 23 N -0.276 5.276 24 C -0.060 4.060 25 C -0.230 4.230 26 C -0.050 4.050 27 C -0.229 4.229 28 H 0.090 0.910 29 H 0.133 0.867 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.231 0.769 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.953 -15.909 -6.141 17.164 hybrid contribution 0.027 0.544 0.023 0.545 sum 1.980 -15.365 -6.118 16.656 Atomic orbital electron populations 1.69823 1.07514 1.29055 1.35848 1.25874 0.94732 1.01186 0.92298 0.86298 0.80661 0.80733 0.79020 1.19394 1.18567 1.20316 1.19561 0.97478 0.90880 1.41021 0.90458 1.17515 0.90996 0.91767 0.88068 1.21294 0.99795 0.96625 1.01160 1.20451 0.98473 0.92757 0.99536 1.20045 1.00790 0.97033 1.10261 1.17448 0.95105 0.84010 0.97780 1.43437 1.62661 1.10605 1.14501 1.20441 0.78116 0.90768 0.81752 1.90738 1.50558 1.35845 1.59769 1.21473 0.99946 0.94050 0.89413 0.87601 1.22529 0.97820 0.97252 0.91289 1.57583 1.24392 1.40969 1.06037 1.22480 0.90240 0.96640 0.99578 1.22728 0.98904 0.88458 0.99225 1.56862 1.51250 1.19398 1.00134 1.21787 0.93257 0.95025 0.95893 1.23054 1.00212 1.00294 0.99391 1.21259 0.94939 0.94867 0.93964 1.21113 1.04080 0.91491 1.06213 0.90994 0.86669 0.89075 0.89342 0.76875 0.89571 0.90066 0.90593 0.90483 0.90109 0.90935 0.88946 0.91061 0.90922 0.90466 0.91371 0.91528 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.22 11.06 55.55 0.61 -20.60 16 2 C 0.08 1.98 5.15 -17.35 -0.09 1.89 16 3 Si 0.91 19.35 29.59 -169.99 -5.03 14.32 16 4 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 5 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.46 -12.73 9.05 -37.74 -0.34 -13.08 16 8 H 0.08 2.10 7.89 -52.48 -0.41 1.69 16 9 C 0.12 3.30 5.54 -106.85 -0.59 2.71 16 10 C -0.17 -4.44 8.67 -38.84 -0.34 -4.78 16 11 C -0.09 -2.17 10.02 -39.69 -0.40 -2.57 16 12 C -0.26 -5.66 9.97 -39.10 -0.39 -6.05 16 13 C 0.15 3.31 6.28 -83.77 -0.53 2.78 16 14 N -0.67 -11.57 4.81 -9.91 -0.05 -11.61 16 15 C 0.50 8.89 6.34 -10.98 -0.07 8.82 16 16 O -0.50 -11.07 11.35 5.55 0.06 -11.00 16 17 C 0.07 0.86 2.90 -70.49 -0.20 0.65 16 18 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 19 C 0.04 0.46 5.29 -4.87 -0.03 0.44 16 20 N -0.57 -6.16 4.37 -239.36 -1.05 -7.21 16 21 C 0.04 0.35 5.51 -3.89 -0.02 0.33 16 22 C 0.04 0.35 5.71 -3.64 -0.02 0.33 16 23 N -0.55 -7.46 4.07 -232.26 -0.94 -8.40 16 24 C 0.07 0.97 4.95 -5.18 -0.03 0.95 16 25 C -0.19 -2.11 5.76 -26.96 -0.16 -2.27 16 26 C 0.08 0.88 5.74 -5.79 -0.03 0.85 16 27 C -0.21 -5.38 8.43 -38.68 -0.33 -5.71 16 28 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 29 H 0.12 3.11 6.33 -52.48 -0.33 2.78 16 30 H 0.09 1.87 8.06 -52.48 -0.42 1.45 16 31 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 32 H 0.40 5.29 8.36 -40.82 -0.34 4.95 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.00 6.83 -51.93 -0.35 0.64 16 35 H 0.08 0.61 7.90 -51.93 -0.41 0.19 16 36 H 0.08 0.60 8.12 -51.93 -0.42 0.18 16 37 H 0.08 0.76 6.21 -51.93 -0.32 0.43 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.09 1.67 5.31 -51.92 -0.28 1.40 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.07 0.71 5.29 -51.93 -0.27 0.44 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.88 7.64 -51.93 -0.40 0.48 16 45 H 0.11 3.00 6.26 -52.49 -0.33 2.68 16 LS Contribution 341.25 15.07 5.14 5.14 Total: -1.00 -30.94 341.25 -11.19 -42.13 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -6.39 Total: 11.92 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -3.56 Total: -14.69 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -1.42 Total: -47.83 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.06 Total: -11.00 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.94 -11.19 -42.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456727696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.369 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds