Wall clock time and date at job start Tue Mar 31 2020 11:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31383 * 1 3 3 Si 1.86798 * 120.00195 * 2 1 4 4 H 1.48497 * 109.47214 * 269.99800 * 3 2 1 5 5 H 1.48504 * 109.47167 * 29.99905 * 3 2 1 6 6 H 1.48504 * 109.47005 * 149.99847 * 3 2 1 7 7 C 1.39013 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00130 * 199.08815 * 7 2 1 9 9 N 1.36914 * 120.00230 * 19.08777 * 7 2 1 10 10 C 1.34777 * 119.99550 * 47.47059 * 9 7 2 11 11 O 1.21621 * 120.00254 * 5.74410 * 10 9 7 12 12 C 1.47442 * 119.99574 * 185.74390 * 10 9 7 13 13 C 1.40403 * 120.47749 * 239.69645 * 12 10 9 14 14 C 1.36851 * 118.47908 * 179.71166 * 13 12 10 15 15 C 1.39404 * 119.39148 * 0.60239 * 14 13 12 16 16 N 1.38465 * 119.53646 * 179.67467 * 15 14 13 17 17 C 1.46503 * 119.99705 * 4.47060 * 16 15 14 18 18 C 1.53000 * 117.49716 * 229.78041 * 17 16 15 19 19 C 1.53006 * 117.49726 * 161.12292 * 17 16 15 20 20 N 1.32614 * 120.93122 * 359.65637 * 15 14 13 21 21 C 1.31664 * 121.64370 * 0.02562 * 20 15 14 22 22 C 1.46495 * 119.99901 * 227.47080 * 9 7 2 23 23 C 1.54268 * 110.03393 * 308.97410 * 22 9 7 24 24 C 1.54967 * 104.15496 * 95.75954 * 23 22 9 25 25 C 1.54886 * 102.78213 * 37.88615 * 24 23 22 26 26 C 1.53872 * 110.03388 * 66.19861 * 22 9 7 27 27 H 0.97006 * 120.00041 * 4.96840 * 1 2 3 28 28 H 1.07998 * 120.76131 * 359.97438 * 13 12 10 29 29 H 1.08005 * 120.30361 * 180.27953 * 14 13 12 30 30 H 0.96999 * 120.00295 * 184.46770 * 16 15 14 31 31 H 1.09001 * 115.55296 * 15.45267 * 17 16 15 32 32 H 1.09006 * 117.50119 * 0.02562 * 18 17 16 33 33 H 1.09004 * 117.49895 * 145.01720 * 18 17 16 34 34 H 1.08992 * 117.49670 * 214.97680 * 19 17 16 35 35 H 1.08999 * 117.49572 * 359.97438 * 19 17 16 36 36 H 1.08001 * 119.74253 * 180.02562 * 21 20 15 37 37 H 1.09008 * 110.01314 * 187.58353 * 22 9 7 38 38 H 1.09005 * 110.48548 * 214.39929 * 23 22 9 39 39 H 1.08990 * 110.48768 * 337.05073 * 23 22 9 40 40 H 1.09000 * 110.71884 * 279.57207 * 24 23 22 41 41 H 1.09004 * 110.91803 * 156.29642 * 24 23 22 42 42 H 1.08997 * 110.48920 * 203.40167 * 25 24 23 43 43 H 1.09006 * 110.59587 * 80.81469 * 25 24 23 44 44 H 1.08995 * 110.03305 * 359.94242 * 26 22 9 45 45 H 1.08996 * 110.03752 * 121.33194 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4954 2.0463 -1.4000 5 1 1.4453 2.6527 0.7000 6 1 3.5454 1.4400 0.7001 7 6 2.0088 -1.2039 0.0005 8 1 3.0444 -1.2296 0.3064 9 7 1.3807 -2.3572 -0.3867 10 6 0.6507 -2.3792 -1.5194 11 8 0.6343 -1.4080 -2.2513 12 6 -0.1281 -3.5807 -1.8712 13 6 0.1215 -4.2649 -3.0716 14 6 -0.6216 -5.3788 -3.3544 15 6 -1.6050 -5.7913 -2.4567 16 7 -2.3632 -6.9140 -2.7431 17 6 -2.0647 -7.7154 -3.9326 18 6 -3.2302 -8.0632 -4.8608 19 6 -2.6073 -9.1454 -3.9753 20 7 -1.8245 -5.1238 -1.3320 21 6 -1.1285 -4.0511 -1.0182 22 6 1.5022 -3.5672 0.4302 23 6 2.9876 -3.8540 0.7322 24 6 3.2205 -3.2183 2.1261 25 6 1.8966 -3.5261 2.8687 26 6 0.8087 -3.3584 1.7879 27 1 -0.4850 0.8369 -0.0728 28 1 0.8853 -3.9225 -3.7540 29 1 -0.4512 -5.9302 -4.2673 30 1 -3.0919 -7.1698 -2.1562 31 1 -1.0932 -7.5318 -4.3916 32 1 -4.2190 -7.6953 -4.5867 33 1 -3.0254 -8.1087 -5.9305 34 1 -1.9930 -9.9024 -4.4628 35 1 -3.1860 -9.4899 -3.1183 36 1 -1.3327 -3.5313 -0.0939 37 1 1.0564 -4.4150 -0.0902 38 1 3.1690 -4.9283 0.7680 39 1 3.6266 -3.3828 -0.0145 40 1 3.3732 -2.1426 2.0387 41 1 4.0649 -3.6871 2.6315 42 1 1.7405 -2.8158 3.6806 43 1 1.9000 -4.5468 3.2514 44 1 0.3827 -2.3565 1.8394 45 1 0.0260 -4.1043 1.9260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523398087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:04 Heat of formation + Delta-G solvation = 41.280986 kcal Electronic energy + Delta-G solvation = -26779.548832 eV Core-core repulsion = 23184.023419 eV Total energy + Delta-G solvation = -3595.525413 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.14030 -38.72761 -37.67968 -36.49436 -33.59899 -33.17791 -32.02535 -31.46180 -29.02846 -27.95113 -26.93902 -24.86406 -23.78303 -22.81156 -22.59878 -21.35003 -20.14143 -19.83603 -19.18187 -17.84645 -16.94293 -16.68467 -15.83570 -15.37888 -15.04515 -14.93745 -14.56942 -14.23308 -14.00802 -13.86136 -13.49316 -13.22526 -12.93997 -12.79081 -12.58040 -12.26709 -11.90857 -11.78442 -11.76348 -11.36092 -10.92931 -10.80675 -10.75240 -10.58545 -10.50751 -10.40691 -10.35091 -10.25345 -10.03891 -9.80619 -9.59395 -9.40238 -9.21191 -8.62255 -8.15333 -7.34948 -7.09864 -6.10974 -3.85467 1.58919 1.77015 3.03455 3.34345 3.41069 3.44855 3.58005 4.08183 4.35726 4.44212 4.51675 4.63422 4.70088 4.89264 5.00040 5.15271 5.24364 5.33935 5.34156 5.42605 5.47316 5.53137 5.60402 5.63692 5.68442 5.79632 5.91821 6.04601 6.16936 6.21271 6.30701 6.32602 6.37863 6.42254 6.52932 6.61381 6.66591 6.73388 6.89305 6.96255 7.02547 7.18608 7.29896 7.62871 7.69021 8.33830 8.44181 9.09340 9.19702 9.66169 10.29813 10.97086 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017653 B = 0.003885 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.759979 B = 7205.312604 C = 8113.989917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.075 3.925 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.332 4.332 8 H 0.080 0.920 9 N -0.437 5.437 10 C 0.531 3.469 11 O -0.543 6.543 12 C -0.194 4.194 13 C -0.009 4.009 14 C -0.240 4.240 15 C 0.395 3.605 16 N -0.699 5.699 17 C 0.095 3.905 18 C -0.200 4.200 19 C -0.191 4.191 20 N -0.545 5.545 21 C 0.174 3.826 22 C 0.130 3.870 23 C -0.125 4.125 24 C -0.118 4.118 25 C -0.115 4.115 26 C -0.130 4.130 27 H 0.264 0.736 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.403 0.597 31 H 0.131 0.869 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.161 0.839 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.091 0.909 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.788 -15.914 -2.987 16.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.135 4.135 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.459 4.459 8 H 0.098 0.902 9 N -0.158 5.158 10 C 0.318 3.682 11 O -0.423 6.423 12 C -0.202 4.202 13 C -0.035 4.035 14 C -0.264 4.264 15 C 0.160 3.840 16 N -0.330 5.330 17 C -0.013 4.013 18 C -0.239 4.239 19 C -0.229 4.229 20 N -0.262 5.262 21 C 0.017 3.983 22 C 0.025 3.975 23 C -0.163 4.163 24 C -0.156 4.156 25 C -0.153 4.153 26 C -0.169 4.169 27 H 0.075 0.925 28 H 0.150 0.850 29 H 0.146 0.854 30 H 0.239 0.761 31 H 0.149 0.851 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.178 0.822 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.109 0.891 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.519 -15.619 -2.855 16.077 hybrid contribution 0.468 0.935 -0.353 1.104 sum -2.051 -14.684 -3.208 15.170 Atomic orbital electron populations 1.69830 1.06463 1.27853 1.43283 1.25238 0.94735 0.99389 0.94110 0.86355 0.79526 0.82798 0.78321 1.20372 1.21448 1.19797 1.18866 0.94768 0.84392 1.47886 0.90204 1.43260 1.46378 1.08742 1.17441 1.17671 0.82794 0.85806 0.81953 1.90619 1.64850 1.35888 1.50894 1.21212 1.01771 1.00185 0.97040 1.21065 0.96252 0.91724 0.94479 1.20991 1.01679 1.01619 1.02098 1.18284 0.89019 0.86925 0.89749 1.43563 1.36191 1.26315 1.26946 1.21502 0.98095 0.92630 0.89071 1.23517 0.99084 1.03408 0.97924 1.23380 1.04445 0.92299 1.02781 1.67152 1.30628 1.10609 1.17784 1.22687 0.88874 0.89047 0.97721 1.21717 0.94571 0.89120 0.92140 1.22564 0.97275 0.98690 0.97764 1.22503 0.96073 1.01955 0.95050 1.22223 0.95782 0.99541 0.97779 1.22530 0.97129 1.03147 0.94085 0.92535 0.84958 0.85415 0.76115 0.85116 0.88520 0.88124 0.87916 0.88520 0.82214 0.91770 0.92757 0.91217 0.90139 0.93331 0.92481 0.93140 0.89080 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.09 12.30 55.50 0.68 -23.41 16 2 C 0.07 2.05 4.39 -17.46 -0.08 1.97 16 3 Si 0.90 21.60 29.60 -169.99 -5.03 16.57 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.33 -8.68 7.16 -15.00 -0.11 -8.79 16 8 H 0.08 2.03 6.05 -52.48 -0.32 1.71 16 9 N -0.44 -10.54 2.33 -107.74 -0.25 -10.79 16 10 C 0.53 13.48 6.30 -12.51 -0.08 13.40 16 11 O -0.54 -16.15 15.54 5.26 0.08 -16.07 16 12 C -0.19 -4.09 4.34 -104.82 -0.45 -4.54 16 13 C -0.01 -0.16 9.88 -39.27 -0.39 -0.55 16 14 C -0.24 -3.63 9.23 -39.65 -0.37 -4.00 16 15 C 0.39 6.18 7.63 -155.26 -1.18 5.00 16 16 N -0.70 -8.42 5.73 -53.95 -0.31 -8.73 16 17 C 0.09 0.87 6.16 -67.93 -0.42 0.45 16 18 C -0.20 -1.53 10.46 -26.69 -0.28 -1.81 16 19 C -0.19 -1.35 10.45 -26.69 -0.28 -1.63 16 20 N -0.54 -9.78 10.38 -12.12 -0.13 -9.91 16 21 C 0.17 3.45 9.32 -17.11 -0.16 3.29 16 22 C 0.13 2.57 2.75 -66.82 -0.18 2.39 16 23 C -0.12 -2.20 5.90 -25.03 -0.15 -2.34 16 24 C -0.12 -1.98 6.53 -24.70 -0.16 -2.14 16 25 C -0.12 -1.88 6.83 -25.07 -0.17 -2.05 16 26 C -0.13 -2.46 6.14 -25.61 -0.16 -2.62 16 27 H 0.26 7.39 8.32 -40.82 -0.34 7.05 16 28 H 0.13 2.24 8.06 -52.49 -0.42 1.81 16 29 H 0.13 1.52 5.99 -52.48 -0.31 1.20 16 30 H 0.40 4.53 8.93 -40.82 -0.36 4.16 16 31 H 0.13 1.11 6.10 -51.93 -0.32 0.80 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.16 3.27 7.86 -52.49 -0.41 2.86 16 37 H 0.06 1.24 5.63 -51.92 -0.29 0.95 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.32 7.58 -51.93 -0.39 0.93 16 40 H 0.08 1.52 6.50 -51.93 -0.34 1.18 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 2.06 7.59 -51.93 -0.39 1.66 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 362.54 15.07 5.46 5.46 Total: -1.00 -31.80 362.54 -10.61 -42.41 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -6.51 Total: 8.45 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -4.61 Total: -3.99 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.00 Total: -52.83 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.08 Total: -16.07 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.80 -10.61 -42.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523398087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.689 kcal (2) G-P(sol) polarization free energy of solvation -31.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds