Wall clock time and date at job start Tue Mar 31 2020 11:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31383 * 1 3 3 Si 1.86798 * 120.00195 * 2 1 4 4 H 1.48497 * 109.47214 * 269.99800 * 3 2 1 5 5 H 1.48504 * 109.47167 * 29.99905 * 3 2 1 6 6 H 1.48504 * 109.47005 * 149.99847 * 3 2 1 7 7 C 1.39013 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00130 * 199.08815 * 7 2 1 9 9 N 1.36914 * 120.00230 * 19.08777 * 7 2 1 10 10 C 1.34777 * 119.99550 * 47.47059 * 9 7 2 11 11 O 1.21621 * 120.00254 * 5.74410 * 10 9 7 12 12 C 1.47442 * 119.99574 * 185.74390 * 10 9 7 13 13 C 1.40403 * 120.47749 * 239.69645 * 12 10 9 14 14 C 1.36851 * 118.47908 * 179.71166 * 13 12 10 15 15 C 1.39404 * 119.39148 * 0.60239 * 14 13 12 16 16 N 1.38465 * 119.53646 * 179.67467 * 15 14 13 17 17 C 1.46503 * 119.99705 * 4.47060 * 16 15 14 18 18 C 1.53000 * 117.49716 * 229.78041 * 17 16 15 19 19 C 1.53006 * 117.49726 * 161.12292 * 17 16 15 20 20 N 1.32614 * 120.93122 * 359.65637 * 15 14 13 21 21 C 1.31664 * 121.64370 * 0.02562 * 20 15 14 22 22 C 1.46495 * 119.99901 * 227.47080 * 9 7 2 23 23 C 1.54268 * 110.03393 * 308.97410 * 22 9 7 24 24 C 1.54967 * 104.15496 * 95.75954 * 23 22 9 25 25 C 1.54886 * 102.78213 * 37.88615 * 24 23 22 26 26 C 1.53872 * 110.03388 * 66.19861 * 22 9 7 27 27 H 0.97006 * 120.00041 * 4.96840 * 1 2 3 28 28 H 1.07998 * 120.76131 * 359.97438 * 13 12 10 29 29 H 1.08005 * 120.30361 * 180.27953 * 14 13 12 30 30 H 0.96999 * 120.00295 * 184.46770 * 16 15 14 31 31 H 1.09001 * 115.55296 * 15.45267 * 17 16 15 32 32 H 1.09006 * 117.50119 * 0.02562 * 18 17 16 33 33 H 1.09004 * 117.49895 * 145.01720 * 18 17 16 34 34 H 1.08992 * 117.49670 * 214.97680 * 19 17 16 35 35 H 1.08999 * 117.49572 * 359.97438 * 19 17 16 36 36 H 1.08001 * 119.74253 * 180.02562 * 21 20 15 37 37 H 1.09008 * 110.01314 * 187.58353 * 22 9 7 38 38 H 1.09005 * 110.48548 * 214.39929 * 23 22 9 39 39 H 1.08990 * 110.48768 * 337.05073 * 23 22 9 40 40 H 1.09000 * 110.71884 * 279.57207 * 24 23 22 41 41 H 1.09004 * 110.91803 * 156.29642 * 24 23 22 42 42 H 1.08997 * 110.48920 * 203.40167 * 25 24 23 43 43 H 1.09006 * 110.59587 * 80.81469 * 25 24 23 44 44 H 1.08995 * 110.03305 * 359.94242 * 26 22 9 45 45 H 1.08996 * 110.03752 * 121.33194 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 2.4954 2.0463 -1.4000 5 1 1.4453 2.6527 0.7000 6 1 3.5454 1.4400 0.7001 7 6 2.0088 -1.2039 0.0005 8 1 3.0444 -1.2296 0.3064 9 7 1.3807 -2.3572 -0.3867 10 6 0.6507 -2.3792 -1.5194 11 8 0.6343 -1.4080 -2.2513 12 6 -0.1281 -3.5807 -1.8712 13 6 0.1215 -4.2649 -3.0716 14 6 -0.6216 -5.3788 -3.3544 15 6 -1.6050 -5.7913 -2.4567 16 7 -2.3632 -6.9140 -2.7431 17 6 -2.0647 -7.7154 -3.9326 18 6 -3.2302 -8.0632 -4.8608 19 6 -2.6073 -9.1454 -3.9753 20 7 -1.8245 -5.1238 -1.3320 21 6 -1.1285 -4.0511 -1.0182 22 6 1.5022 -3.5672 0.4302 23 6 2.9876 -3.8540 0.7322 24 6 3.2205 -3.2183 2.1261 25 6 1.8966 -3.5261 2.8687 26 6 0.8087 -3.3584 1.7879 27 1 -0.4850 0.8369 -0.0728 28 1 0.8853 -3.9225 -3.7540 29 1 -0.4512 -5.9302 -4.2673 30 1 -3.0919 -7.1698 -2.1562 31 1 -1.0932 -7.5318 -4.3916 32 1 -4.2190 -7.6953 -4.5867 33 1 -3.0254 -8.1087 -5.9305 34 1 -1.9930 -9.9024 -4.4628 35 1 -3.1860 -9.4899 -3.1183 36 1 -1.3327 -3.5313 -0.0939 37 1 1.0564 -4.4150 -0.0902 38 1 3.1690 -4.9283 0.7680 39 1 3.6266 -3.3828 -0.0145 40 1 3.3732 -2.1426 2.0387 41 1 4.0649 -3.6871 2.6315 42 1 1.7405 -2.8158 3.6806 43 1 1.9000 -4.5468 3.2514 44 1 0.3827 -2.3565 1.8394 45 1 0.0260 -4.1043 1.9260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523398087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:03 Heat of formation + Delta-G solvation = 22.570192 kcal Electronic energy + Delta-G solvation = -26780.360193 eV Core-core repulsion = 23184.023419 eV Total energy + Delta-G solvation = -3596.336773 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.56998 -40.26983 -38.63434 -38.16290 -35.13219 -34.69613 -33.43868 -33.30555 -30.43948 -29.39570 -28.54726 -26.66646 -25.07973 -24.22387 -23.19951 -22.42281 -21.65992 -21.27780 -20.89576 -19.08504 -18.56111 -17.85402 -17.58934 -16.93797 -16.47458 -16.19401 -15.90612 -15.80140 -15.40004 -15.26201 -14.96260 -14.71139 -14.47331 -14.05530 -14.00253 -13.76439 -13.35569 -13.13923 -12.85303 -12.77038 -12.50888 -12.40942 -12.36699 -12.14923 -12.05443 -11.78832 -11.76860 -11.55493 -11.37400 -11.25846 -10.92856 -10.70312 -10.65138 -10.54030 -10.04526 -9.07230 -8.56424 -8.17041 -5.93871 0.17771 0.38174 1.38519 1.46823 1.50574 2.01580 2.26399 2.46075 2.81112 3.08438 3.15486 3.31462 3.58939 3.81164 3.88850 3.94027 3.98568 4.05727 4.08819 4.09925 4.12517 4.35993 4.37470 4.62480 4.73846 4.76050 4.79405 4.82767 4.85791 4.92978 4.98202 5.02706 5.08125 5.12351 5.22969 5.26457 5.29259 5.34053 5.46797 5.51742 5.55828 5.64546 5.77286 6.07120 6.30820 6.51209 7.08240 7.12586 7.24067 7.70337 8.35136 8.90252 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017653 B = 0.003885 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.759979 B = 7205.312604 C = 8113.989917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.025 3.975 3 Si 0.956 3.044 4 H -0.293 1.293 5 H -0.285 1.285 6 H -0.251 1.251 7 C -0.334 4.334 8 H 0.084 0.916 9 N -0.443 5.443 10 C 0.523 3.477 11 O -0.603 6.603 12 C -0.226 4.226 13 C -0.011 4.011 14 C -0.223 4.223 15 C 0.401 3.599 16 N -0.686 5.686 17 C 0.066 3.934 18 C -0.194 4.194 19 C -0.173 4.173 20 N -0.557 5.557 21 C 0.176 3.824 22 C 0.125 3.875 23 C -0.120 4.120 24 C -0.115 4.115 25 C -0.108 4.108 26 C -0.125 4.125 27 H 0.257 0.743 28 H 0.138 0.862 29 H 0.169 0.831 30 H 0.408 0.592 31 H 0.142 0.858 32 H 0.091 0.909 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.099 0.901 36 H 0.141 0.859 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.051 0.949 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.045 0.955 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.240 -19.569 -3.365 19.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.180 4.180 3 Si 0.782 3.218 4 H -0.221 1.221 5 H -0.211 1.211 6 H -0.175 1.175 7 C -0.461 4.461 8 H 0.102 0.898 9 N -0.163 5.163 10 C 0.312 3.688 11 O -0.487 6.487 12 C -0.234 4.234 13 C -0.037 4.037 14 C -0.247 4.247 15 C 0.164 3.836 16 N -0.316 5.316 17 C -0.040 4.040 18 C -0.233 4.233 19 C -0.211 4.211 20 N -0.275 5.275 21 C 0.019 3.981 22 C 0.021 3.979 23 C -0.158 4.158 24 C -0.153 4.153 25 C -0.146 4.146 26 C -0.164 4.164 27 H 0.066 0.934 28 H 0.156 0.844 29 H 0.186 0.814 30 H 0.244 0.756 31 H 0.159 0.841 32 H 0.109 0.891 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.117 0.883 36 H 0.158 0.842 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.964 -19.350 -3.206 19.712 hybrid contribution 0.200 1.819 -0.333 1.860 sum -1.764 -17.531 -3.539 17.971 Atomic orbital electron populations 1.69951 1.07797 1.27780 1.45651 1.25996 0.95352 1.02358 0.94297 0.85520 0.79436 0.79486 0.77388 1.22052 1.21120 1.17461 1.19105 0.94975 0.85375 1.46662 0.89818 1.43462 1.45592 1.09503 1.17741 1.18329 0.82519 0.86441 0.81549 1.90551 1.66968 1.38364 1.52789 1.20840 1.03134 1.00059 0.99364 1.21185 0.96885 0.92365 0.93312 1.21286 1.00068 1.00358 1.03015 1.18609 0.88944 0.87180 0.88866 1.43761 1.35196 1.24989 1.27688 1.21862 0.99387 0.94057 0.88687 1.23567 0.98012 1.03077 0.98652 1.23470 1.03645 0.91443 1.02526 1.67166 1.30714 1.10419 1.19225 1.22290 0.89057 0.89720 0.97081 1.21930 0.96610 0.87457 0.91900 1.22557 0.94835 1.00641 0.97759 1.22458 0.97525 1.00419 0.94851 1.22215 0.94148 1.01474 0.96715 1.22416 0.98327 1.00847 0.94804 0.93380 0.84440 0.81416 0.75607 0.84080 0.89090 0.86604 0.86020 0.88262 0.84165 0.91165 0.89464 0.92993 0.92985 0.90004 0.92403 0.89931 0.93609 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.27 12.30 21.67 0.27 -53.00 16 2 C 0.03 1.45 4.39 84.95 0.37 1.82 16 3 Si 0.96 46.05 29.60 68.60 2.03 48.09 16 4 H -0.29 -14.79 7.11 99.48 0.71 -14.09 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.25 -11.04 7.11 99.48 0.71 -10.34 16 7 C -0.33 -18.16 7.16 84.09 0.60 -17.56 16 8 H 0.08 4.39 6.05 -2.91 -0.02 4.37 16 9 N -0.44 -22.31 2.33 -613.03 -1.43 -23.73 16 10 C 0.52 27.94 6.30 86.67 0.55 28.49 16 11 O -0.60 -38.02 15.54 -4.10 -0.06 -38.08 16 12 C -0.23 -9.81 4.34 -19.99 -0.09 -9.90 16 13 C -0.01 -0.40 9.88 22.47 0.22 -0.18 16 14 C -0.22 -6.24 9.23 22.23 0.21 -6.03 16 15 C 0.40 11.75 7.63 133.25 1.02 12.77 16 16 N -0.69 -14.56 5.73 -324.59 -1.86 -16.42 16 17 C 0.07 0.96 6.16 44.99 0.28 1.24 16 18 C -0.19 -2.25 10.46 30.62 0.32 -1.93 16 19 C -0.17 -1.74 10.45 30.62 0.32 -1.42 16 20 N -0.56 -19.74 10.38 -192.26 -2.00 -21.74 16 21 C 0.18 7.18 9.32 85.05 0.79 7.97 16 22 C 0.13 5.01 2.75 45.72 0.13 5.14 16 23 C -0.12 -4.07 5.90 31.70 0.19 -3.88 16 24 C -0.12 -3.66 6.53 31.91 0.21 -3.45 16 25 C -0.11 -3.33 6.83 31.67 0.22 -3.12 16 26 C -0.13 -4.79 6.14 31.32 0.19 -4.60 16 27 H 0.26 15.30 8.32 -92.70 -0.77 14.53 16 28 H 0.14 4.64 8.06 -2.91 -0.02 4.62 16 29 H 0.17 3.29 5.99 -2.91 -0.02 3.27 16 30 H 0.41 8.10 8.93 -92.71 -0.83 7.27 16 31 H 0.14 1.76 6.10 -2.39 -0.01 1.75 16 32 H 0.09 1.19 8.14 -2.38 -0.02 1.18 16 33 H 0.12 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.12 0.82 8.14 -2.39 -0.02 0.81 16 35 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.14 6.14 7.86 -2.91 -0.02 6.12 16 37 H 0.07 2.72 5.63 -2.38 -0.01 2.71 16 38 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 39 H 0.05 1.95 7.58 -2.39 -0.02 1.93 16 40 H 0.05 1.94 6.50 -2.39 -0.02 1.93 16 41 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.05 2.17 7.59 -2.39 -0.02 2.15 16 45 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -74.38 362.54 2.66 -71.72 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.19 Total: 27.81 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 5.52 Total: 5.36 kcal Atomic # 7 Polarization: -109.88 SS G_CDS: -5.02 Total: -114.90 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.06 Total: -38.08 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.09 kcal Total: -74.38 2.66 -71.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523398087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.294 kcal (2) G-P(sol) polarization free energy of solvation -74.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds