Wall clock time and date at job start Tue Mar 31 2020 11:19:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86798 * 120.00258 * 2 1 4 4 H 1.48493 * 109.47082 * 272.41222 * 3 2 1 5 5 H 1.48504 * 109.46824 * 32.41478 * 3 2 1 6 6 H 1.48504 * 109.47034 * 152.40918 * 3 2 1 7 7 C 1.40036 * 119.99394 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00579 * 347.78903 * 7 2 1 9 9 C 1.41549 * 119.99492 * 167.79280 * 7 2 1 10 10 C 1.41178 * 120.99462 * 149.36802 * 9 7 2 11 11 C 1.37589 * 119.01269 * 180.02562 * 10 9 7 12 12 N 1.32079 * 121.11034 * 359.72275 * 11 10 9 13 13 C 1.32476 * 122.23135 * 0.57357 * 12 11 10 14 14 N 1.39464 * 119.57809 * 179.70495 * 13 12 11 15 15 C 1.34775 * 120.00153 * 4.92035 * 14 13 12 16 16 O 1.21274 * 120.00495 * 355.08547 * 15 14 13 17 17 C 1.50704 * 119.99923 * 175.08177 * 15 14 13 18 18 C 1.53101 * 109.57843 * 299.71204 * 17 15 14 19 19 C 1.53044 * 109.28573 * 182.40197 * 18 17 15 20 20 N 1.46847 * 109.51269 * 59.18588 * 19 18 17 21 21 C 1.46906 * 110.99713 * 174.16238 * 20 19 18 22 22 C 1.52998 * 117.49799 * 248.61956 * 21 20 19 23 23 C 1.52992 * 60.00250 * 252.51149 * 22 21 20 24 24 C 1.46839 * 111.19909 * 298.25951 * 20 19 18 25 25 C 1.53031 * 109.52541 * 61.74378 * 24 20 19 26 26 C 1.38592 * 120.83930 * 359.42490 * 13 12 11 27 27 H 0.97003 * 119.99700 * 359.97438 * 1 2 3 28 28 H 1.07998 * 120.49063 * 359.97438 * 10 9 7 29 29 H 1.08003 * 119.44511 * 179.97438 * 11 10 9 30 30 H 0.96997 * 119.99817 * 184.91910 * 14 13 12 31 31 H 1.09000 * 109.52312 * 59.87595 * 17 15 14 32 32 H 1.08997 * 109.48731 * 62.46815 * 18 17 15 33 33 H 1.09000 * 109.50455 * 302.35066 * 18 17 15 34 34 H 1.08991 * 109.46286 * 299.17148 * 19 18 17 35 35 H 1.09003 * 109.45650 * 179.19412 * 19 18 17 36 36 H 1.09002 * 115.54757 * 34.32897 * 21 20 19 37 37 H 1.09000 * 117.49703 * 0.02562 * 22 21 20 38 38 H 1.08999 * 117.49801 * 145.01784 * 22 21 20 39 39 H 1.09002 * 117.50250 * 252.51667 * 23 22 21 40 40 H 1.09001 * 117.50043 * 107.48678 * 23 22 21 41 41 H 1.09006 * 109.46244 * 181.76280 * 24 20 19 42 42 H 1.09007 * 109.46236 * 301.74035 * 24 20 19 43 43 H 1.08998 * 109.50645 * 60.76137 * 25 24 20 44 44 H 1.09005 * 109.50596 * 180.83967 * 25 24 20 45 45 H 1.08001 * 120.60437 * 180.29606 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 2.4380 2.0758 -1.3988 5 1 1.4654 2.6373 0.7505 6 1 3.5636 1.4258 0.6485 7 6 2.0075 -1.2128 -0.0005 8 1 1.4858 -2.1376 0.1969 9 6 3.3990 -1.2266 -0.2598 10 6 4.2367 -2.2042 0.3194 11 6 5.5837 -2.1791 0.0400 12 7 6.0976 -1.2630 -0.7607 13 6 5.3560 -0.3211 -1.3245 14 7 5.9577 0.6229 -2.1563 15 6 7.2659 0.5154 -2.4619 16 8 7.9407 -0.3489 -1.9439 17 6 7.8903 1.4693 -3.4475 18 6 7.1894 1.3387 -4.8024 19 6 7.8673 2.2662 -5.8136 20 7 9.2847 1.9034 -5.9387 21 6 9.9354 2.6812 -7.0015 22 6 10.3727 1.9295 -8.2603 23 6 11.4208 2.4202 -7.2596 24 6 9.9892 2.0663 -4.6607 25 6 9.3746 1.1330 -3.6152 26 6 3.9891 -0.2653 -1.1026 27 1 -0.4850 0.8401 0.0004 28 1 3.8265 -2.9600 0.9727 29 1 6.2311 -2.9235 0.4797 30 1 5.4345 1.3567 -2.5150 31 1 7.7874 2.4907 -3.0811 32 1 6.1411 1.6183 -4.6980 33 1 7.2590 0.3080 -5.1503 34 1 7.7852 3.2979 -5.4720 35 1 7.3795 2.1647 -6.7831 36 1 9.5750 3.7025 -7.1244 37 1 10.1772 0.8579 -8.3000 38 1 10.2999 2.4562 -9.2118 39 1 12.0375 3.2699 -7.5526 40 1 11.9151 1.6715 -6.6406 41 1 11.0429 1.8200 -4.7928 42 1 9.8971 3.0991 -4.3243 43 1 9.4785 0.0991 -3.9443 44 1 9.8881 1.2651 -2.6627 45 1 3.3874 0.5014 -1.5680 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000559019593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:13 Heat of formation + Delta-G solvation = 8.873525 kcal Electronic energy + Delta-G solvation = -25879.899019 eV Core-core repulsion = 22282.968313 eV Total energy + Delta-G solvation = -3596.930706 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.66576 -40.39271 -39.41707 -37.02204 -36.15650 -35.57255 -33.28731 -32.97743 -31.88242 -30.57074 -27.94674 -26.42510 -24.42051 -24.22346 -23.32069 -22.88132 -21.95867 -21.31494 -20.63932 -19.56512 -18.78867 -17.72229 -17.51739 -17.26378 -16.44695 -16.33470 -16.04054 -15.86891 -15.59047 -15.46135 -15.00500 -14.84625 -14.77100 -14.51588 -14.35644 -14.07025 -13.48868 -13.37178 -13.21073 -12.77575 -12.67625 -12.64980 -12.52963 -12.28057 -12.18342 -11.83734 -11.67137 -11.59654 -11.50600 -11.33182 -11.25720 -10.98977 -10.85955 -10.15638 -9.67607 -9.22130 -9.01880 -8.95878 -6.74622 0.51031 0.74215 1.21636 1.37121 1.46882 1.78007 2.02096 2.08553 2.66839 2.76610 2.93299 3.44431 3.50039 3.69905 3.77944 4.00504 4.05200 4.09102 4.22846 4.26582 4.29079 4.39615 4.42314 4.47716 4.57489 4.63628 4.65682 4.71252 4.75099 4.82149 4.84345 4.89280 4.92743 5.08508 5.11078 5.12303 5.16943 5.27632 5.33857 5.35295 5.50470 5.68519 6.01164 6.11749 6.18699 6.22802 6.44271 6.50962 6.67179 7.20553 7.66368 8.10511 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021949 B = 0.002970 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.385159 B = 9423.887604 C =10181.491655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.050 3.950 3 Si 0.969 3.031 4 H -0.241 1.241 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.468 4.468 8 H 0.065 0.935 9 C 0.112 3.888 10 C -0.282 4.282 11 C 0.128 3.872 12 N -0.573 5.573 13 C 0.366 3.634 14 N -0.656 5.656 15 C 0.503 3.497 16 O -0.518 6.518 17 C -0.095 4.095 18 C -0.105 4.105 19 C 0.067 3.933 20 N -0.529 5.529 21 C -0.003 4.003 22 C -0.165 4.165 23 C -0.171 4.171 24 C 0.067 3.933 25 C -0.091 4.091 26 C -0.325 4.325 27 H 0.298 0.702 28 H 0.121 0.879 29 H 0.160 0.840 30 H 0.423 0.577 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.406 12.332 -14.102 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.167 4.167 3 Si 0.792 3.208 4 H -0.166 1.166 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.499 4.499 8 H 0.084 0.916 9 C 0.104 3.896 10 C -0.306 4.306 11 C -0.024 4.024 12 N -0.293 5.293 13 C 0.137 3.863 14 N -0.304 5.304 15 C 0.290 3.710 16 O -0.390 6.390 17 C -0.116 4.116 18 C -0.143 4.143 19 C -0.060 4.060 20 N -0.254 5.254 21 C -0.111 4.111 22 C -0.203 4.203 23 C -0.209 4.209 24 C -0.060 4.060 25 C -0.130 4.130 26 C -0.351 4.351 27 H 0.109 0.891 28 H 0.139 0.861 29 H 0.177 0.823 30 H 0.262 0.738 31 H 0.138 0.862 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.601 11.298 -14.073 25.209 hybrid contribution -1.633 1.052 0.679 2.057 sum 15.968 12.350 -13.395 24.227 Atomic orbital electron populations 1.69630 1.09079 1.31940 1.35628 1.26871 0.95492 1.04302 0.90057 0.85456 0.78832 0.76116 0.80377 1.16563 1.20415 1.18724 1.19482 0.91662 0.95488 1.43285 0.91650 1.17918 0.93229 0.90610 0.87872 1.22123 0.94570 1.05587 1.08282 1.22390 0.92942 0.94634 0.92474 1.67473 1.38829 1.07117 1.15852 1.18290 0.88163 0.89413 0.90445 1.43642 1.11381 1.27753 1.47597 1.21589 0.81038 0.85807 0.82560 1.90759 1.61110 1.35551 1.51610 1.21445 0.96765 0.99165 0.94258 1.21593 0.99656 1.01022 0.92066 1.22022 0.87484 0.96993 0.99507 1.61661 1.02520 1.55795 1.05452 1.22481 0.97078 0.96214 0.95353 1.23089 1.02699 1.00786 0.93711 1.23108 0.90845 1.03858 1.03059 1.22019 0.98409 0.97693 0.87921 1.21344 0.92649 1.00064 0.98927 1.21341 0.93557 1.08761 1.11401 0.89091 0.86113 0.82321 0.73841 0.86166 0.89231 0.92439 0.92947 0.89478 0.88227 0.89513 0.87409 0.87157 0.89029 0.89847 0.93481 0.92734 0.91230 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.53 13.92 21.84 0.30 -43.23 16 2 C 0.05 2.53 5.48 85.29 0.47 3.00 16 3 Si 0.97 40.09 24.42 68.60 1.68 41.77 16 4 H -0.24 -8.76 6.67 99.48 0.66 -8.10 16 5 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.26 -11.60 6.65 99.48 0.66 -10.94 16 7 C -0.47 -25.41 9.67 23.52 0.23 -25.18 16 8 H 0.07 3.80 8.06 -2.91 -0.02 3.78 16 9 C 0.11 5.69 5.16 -21.11 -0.11 5.59 16 10 C -0.28 -13.29 9.90 22.84 0.23 -13.06 16 11 C 0.13 5.73 11.15 84.50 0.94 6.67 16 12 N -0.57 -27.42 7.85 -193.54 -1.52 -28.94 16 13 C 0.37 16.33 7.42 132.75 0.98 17.32 16 14 N -0.66 -22.79 5.27 -308.66 -1.63 -24.42 16 15 C 0.50 16.89 7.12 87.66 0.62 17.51 16 16 O -0.52 -22.28 14.23 -3.01 -0.04 -22.33 16 17 C -0.09 -2.11 2.59 -11.46 -0.03 -2.14 16 18 C -0.11 -2.01 5.27 30.64 0.16 -1.85 16 19 C 0.07 1.03 5.43 86.33 0.47 1.50 16 20 N -0.53 -9.06 4.80 -871.11 -4.18 -13.25 16 21 C 0.00 -0.04 5.30 44.91 0.24 0.20 16 22 C -0.17 -2.14 10.46 30.59 0.32 -1.82 16 23 C -0.17 -2.06 9.70 30.59 0.30 -1.76 16 24 C 0.07 1.13 5.34 86.33 0.46 1.60 16 25 C -0.09 -2.06 4.68 30.64 0.14 -1.92 16 26 C -0.33 -15.16 6.94 22.98 0.16 -15.00 16 27 H 0.30 13.78 8.29 -92.71 -0.77 13.02 16 28 H 0.12 5.28 8.06 -2.91 -0.02 5.26 16 29 H 0.16 6.01 8.06 -2.91 -0.02 5.99 16 30 H 0.42 11.30 8.34 -92.71 -0.77 10.52 16 31 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.09 1.44 7.79 -2.39 -0.02 1.42 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.09 1.23 8.12 -2.39 -0.02 1.21 16 36 H 0.10 1.16 8.08 -2.39 -0.02 1.14 16 37 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 1.25 7.23 -2.39 -0.02 1.24 16 41 H 0.08 1.34 6.68 -2.38 -0.02 1.32 16 42 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 43 H 0.05 1.51 8.04 -2.39 -0.02 1.50 16 44 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 45 H 0.12 5.15 4.43 -2.91 -0.01 5.14 16 Total: -1.00 -68.03 358.85 0.33 -67.70 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.14 Total: 32.04 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 5.58 Total: -9.36 kcal Atomic # 7 Polarization: -102.81 SS G_CDS: -7.03 Total: -109.83 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.04 Total: -22.33 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.68 Total: 41.77 kcal Total: -68.03 0.33 -67.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000559019593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.577 kcal (2) G-P(sol) polarization free energy of solvation -68.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds