Wall clock time and date at job start Tue Mar 31 2020 11:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 115.54945 * 2 1 4 4 C 1.52993 * 109.47157 * 34.33154 * 3 2 1 5 5 S 1.81404 * 109.47314 * 179.97438 * 4 3 2 6 6 O 1.42108 * 110.54028 * 68.37904 * 5 4 3 7 7 O 1.42099 * 110.54285 * 291.62901 * 5 4 3 8 8 N 1.65601 * 104.45141 * 180.02562 * 5 4 3 9 9 C 1.46919 * 120.63059 * 90.00188 * 8 5 4 10 10 C 1.53195 * 108.89273 * 233.51576 * 9 8 5 11 11 C 1.53070 * 109.29524 * 305.57804 * 10 9 8 12 12 C 1.52997 * 109.45504 * 181.24323 * 11 10 9 13 13 C 1.50697 * 109.47246 * 64.78853 * 12 11 10 14 14 H 1.08001 * 119.99754 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00470 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99586 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00183 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47226 * 60.00346 * 17 15 13 19 19 H 1.48500 * 109.47189 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47514 * 300.00126 * 17 15 13 21 21 C 1.53039 * 109.65812 * 61.15209 * 11 10 9 22 22 C 1.46928 * 120.62958 * 269.97929 * 8 5 4 23 23 C 1.52998 * 117.51866 * 145.70870 * 2 1 3 24 24 C 1.52994 * 60.00236 * 107.47688 * 23 2 1 25 25 H 1.09002 * 109.46956 * 85.57746 * 1 2 3 26 26 H 1.08999 * 109.47074 * 205.57744 * 1 2 3 27 27 H 1.09001 * 109.46813 * 325.58506 * 1 2 3 28 28 H 1.09005 * 109.47411 * 274.32836 * 3 2 1 29 29 H 1.09000 * 109.47072 * 154.33465 * 3 2 1 30 30 H 1.09005 * 109.47420 * 60.00080 * 4 3 2 31 31 H 1.09000 * 109.47384 * 300.00120 * 4 3 2 32 32 H 1.09002 * 109.58751 * 353.37527 * 9 8 5 33 33 H 1.08996 * 109.58750 * 113.65711 * 9 8 5 34 34 H 1.08997 * 109.50046 * 65.38734 * 10 9 8 35 35 H 1.09003 * 109.49733 * 185.48713 * 10 9 8 36 36 H 1.09007 * 109.35101 * 301.12962 * 11 10 9 37 37 H 1.08997 * 109.47497 * 184.78921 * 12 11 10 38 38 H 1.08997 * 109.47002 * 304.78963 * 12 11 10 39 39 H 0.96997 * 119.99553 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.49876 * 178.74890 * 21 11 10 41 41 H 1.09005 * 109.52615 * 58.67140 * 21 11 10 42 42 H 1.08998 * 109.58787 * 246.20340 * 22 8 5 43 43 H 1.09007 * 109.58600 * 6.48652 * 22 8 5 44 44 H 1.09000 * 117.49451 * 214.96950 * 23 2 1 45 45 H 1.09000 * 117.49690 * 359.97438 * 23 2 1 46 46 H 1.09003 * 117.49976 * 252.50943 * 24 23 2 47 47 H 1.09003 * 117.50287 * 107.49007 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.3352 2.3542 0.8135 5 16 2.1179 3.9907 0.8142 6 8 2.0693 4.5672 -0.4838 7 8 3.3276 3.9646 1.5593 8 7 1.1017 4.9345 1.7191 9 6 1.2857 5.0530 3.1719 10 6 -0.0342 4.7082 3.8689 11 6 -1.1512 5.5868 3.3000 12 6 -2.4653 5.2671 4.0153 13 6 -2.3521 5.6493 5.4686 14 1 -1.4347 6.0778 5.8444 15 6 -3.4199 5.4530 6.3184 16 7 -4.5373 4.9317 5.8606 17 14 -3.2792 5.9262 8.1199 18 1 -2.9964 7.3798 8.2293 19 1 -4.5548 5.6160 8.8142 20 1 -2.1746 5.1582 8.7487 21 6 -1.3070 5.3156 1.8019 22 6 -0.0007 5.6696 1.0843 23 6 2.2370 -1.1210 0.7645 24 6 2.2364 -1.1207 -0.7655 25 1 -0.3633 0.0792 -1.0246 26 1 -0.3633 -0.9269 0.4437 27 1 -0.3633 0.8478 0.5808 28 1 2.2767 1.7417 -1.0248 29 1 3.1823 1.3087 0.4451 30 1 1.2485 1.9930 1.8383 31 1 0.3428 2.4259 0.3684 32 1 2.0631 4.3626 3.4993 33 1 1.5749 6.0738 3.4215 34 1 -0.2746 3.6594 3.6946 35 1 0.0624 4.8867 4.9398 36 1 -0.8996 6.6361 3.4548 37 1 -3.2765 5.8301 3.5538 38 1 -2.6722 4.2000 3.9354 39 1 -5.2884 4.7932 6.4586 40 1 -2.1176 5.9262 1.4041 41 1 -1.5347 4.2613 1.6442 42 1 0.1811 6.7414 1.1639 43 1 -0.0706 5.3879 0.0336 44 1 3.1721 -0.8751 1.2675 45 1 1.6120 -1.8586 1.2680 46 1 1.6112 -1.8582 -1.2687 47 1 3.1713 -0.8746 -1.2691 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578886125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:24 Heat of formation + Delta-G solvation = -72.573565 kcal Electronic energy + Delta-G solvation = -25337.479081 eV Core-core repulsion = 21840.167765 eV Total energy + Delta-G solvation = -3497.311316 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -38.77205 -38.33838 -37.16007 -35.95281 -33.95725 -32.77974 -31.96174 -30.75834 -28.49510 -27.69349 -24.89214 -24.15993 -22.90006 -22.69795 -21.36860 -19.64996 -19.13853 -18.64949 -17.59332 -16.56005 -16.34216 -16.20233 -15.67316 -15.04288 -14.57411 -14.40064 -14.16955 -13.93514 -13.63512 -13.41146 -13.27671 -13.24541 -12.87467 -12.58730 -12.46113 -12.13358 -12.01126 -11.94301 -11.79491 -11.70760 -11.66723 -11.56225 -11.18501 -10.96465 -10.80298 -10.75170 -10.69871 -10.47636 -10.28377 -10.16062 -9.91438 -9.66302 -9.35367 -9.01581 -8.63346 -8.37150 -6.02400 -4.04228 0.23239 2.63952 3.30844 3.35954 3.37978 3.41197 3.78399 4.08710 4.24019 4.37493 4.43457 4.54635 4.65175 4.73235 4.79463 5.00460 5.14756 5.29248 5.32925 5.36001 5.36481 5.42772 5.48342 5.55269 5.60673 5.63782 5.67278 5.72659 5.78294 5.82008 5.84807 5.85191 6.00267 6.03756 6.16389 6.37107 6.40110 6.63209 6.66167 6.96043 7.00169 7.10106 7.64142 7.78524 7.97348 8.40247 9.02242 9.59812 11.08784 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014936 B = 0.003473 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.235620 B = 8059.178803 C = 8966.481640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.120 4.120 3 C -0.072 4.072 4 C -0.632 4.632 5 S 2.606 3.394 6 O -0.960 6.960 7 O -0.959 6.959 8 N -0.994 5.994 9 C 0.118 3.882 10 C -0.120 4.120 11 C -0.079 4.079 12 C 0.028 3.972 13 C -0.517 4.517 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.889 3.111 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.131 4.131 22 C 0.122 3.878 23 C -0.175 4.175 24 C -0.177 4.177 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.260 0.740 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.971 -8.645 -12.770 19.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.121 4.121 3 C -0.111 4.111 4 C -0.760 4.760 5 S 2.700 3.300 6 O -0.950 6.950 7 O -0.949 6.949 8 N -0.833 5.833 9 C -0.006 4.006 10 C -0.159 4.159 11 C -0.098 4.098 12 C -0.009 4.009 13 C -0.555 4.555 14 H 0.074 0.926 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.170 4.170 22 C -0.003 4.003 23 C -0.212 4.212 24 C -0.214 4.214 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.154 0.846 31 H 0.156 0.844 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.596 -8.385 -13.116 20.025 hybrid contribution -0.713 -0.292 1.349 1.554 sum 11.883 -8.677 -11.767 18.840 Atomic orbital electron populations 1.21516 0.91607 1.02839 1.02262 1.21338 0.95171 0.89885 1.05731 1.20829 0.97639 0.92785 0.99827 1.30793 1.13236 1.21871 1.10123 1.05086 0.74634 0.76465 0.73781 1.93573 1.86760 1.74895 1.39813 1.93575 1.42551 1.86913 1.71910 1.57628 1.46742 1.60806 1.18087 1.21599 0.98841 1.02492 0.77706 1.21929 0.93183 0.99937 1.00813 1.21150 0.97830 0.98696 0.92103 1.19124 0.90504 0.96790 0.94515 1.21216 0.98965 1.41111 0.94237 0.92617 1.25015 0.95470 0.95370 0.98577 1.69952 1.03528 1.44594 1.35487 0.86708 0.77225 0.79002 0.85351 1.20296 1.21401 1.20273 1.22049 0.95711 1.01577 0.97643 1.21497 0.86093 0.96746 0.95984 1.23220 1.02535 1.01141 0.94341 1.23070 1.02478 1.01214 0.94604 0.92066 0.92241 0.90942 0.90123 0.90334 0.84564 0.84411 0.90014 0.91213 0.92462 0.89753 0.92274 0.96657 0.96706 0.93013 0.91120 0.92193 0.91159 0.90002 0.88625 0.88608 0.88632 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 9.49 37.16 0.35 -0.73 16 2 C -0.12 -1.06 2.47 -154.51 -0.38 -1.44 16 3 C -0.07 -0.67 5.41 -26.74 -0.14 -0.81 16 4 C -0.63 -6.12 5.18 37.15 0.19 -5.93 16 5 S 2.61 32.94 5.41 -107.50 -0.58 32.35 16 6 O -0.96 -14.34 16.72 -57.54 -0.96 -15.31 16 7 O -0.96 -14.62 16.72 -57.54 -0.96 -15.58 16 8 N -0.99 -13.21 3.22 -113.52 -0.37 -13.57 16 9 C 0.12 1.65 6.31 -3.71 -0.02 1.63 16 10 C -0.12 -1.97 5.19 -26.59 -0.14 -2.11 16 11 C -0.08 -1.45 2.10 -90.57 -0.19 -1.64 16 12 C 0.03 0.66 4.45 -27.89 -0.12 0.54 16 13 C -0.52 -13.75 8.39 -34.44 -0.29 -14.03 16 14 H 0.06 1.43 7.05 -52.49 -0.37 1.06 16 15 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.15 13.29 55.43 0.74 -25.42 16 17 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.13 -1.96 5.36 -26.61 -0.14 -2.10 16 22 C 0.12 1.60 6.32 -3.71 -0.02 1.58 16 23 C -0.18 -1.44 9.82 -26.74 -0.26 -1.70 16 24 C -0.18 -1.36 9.97 -26.73 -0.27 -1.63 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 27 H 0.07 0.64 5.59 -51.93 -0.29 0.35 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.69 7.90 -51.93 -0.41 0.27 16 30 H 0.14 1.23 8.14 -51.92 -0.42 0.80 16 31 H 0.14 1.18 6.45 -51.92 -0.33 0.85 16 32 H 0.08 1.04 7.10 -51.93 -0.37 0.68 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.51 6.91 -51.93 -0.36 1.15 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 0.96 7.10 -51.92 -0.37 0.59 16 44 H 0.10 0.75 8.05 -51.93 -0.42 0.33 16 45 H 0.10 0.74 8.05 -51.93 -0.42 0.32 16 46 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -32.48 378.39 -11.37 -43.86 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -8.38 Total: -1.17 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: -1.54 Total: -26.92 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.37 Total: -38.99 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -1.92 Total: -30.88 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 32.94 SS G_CDS: -0.58 Total: 32.35 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.48 -11.37 -43.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578886125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.719 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds