Wall clock time and date at job start Tue Mar 31 2020 11:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 115.54945 * 2 1 4 4 C 1.52993 * 109.47157 * 34.33154 * 3 2 1 5 5 S 1.81404 * 109.47314 * 179.97438 * 4 3 2 6 6 O 1.42108 * 110.54028 * 68.37904 * 5 4 3 7 7 O 1.42099 * 110.54285 * 291.62901 * 5 4 3 8 8 N 1.65601 * 104.45141 * 180.02562 * 5 4 3 9 9 C 1.46919 * 120.63059 * 90.00188 * 8 5 4 10 10 C 1.53195 * 108.89273 * 233.51576 * 9 8 5 11 11 C 1.53070 * 109.29524 * 305.57804 * 10 9 8 12 12 C 1.52997 * 109.45504 * 181.24323 * 11 10 9 13 13 C 1.50697 * 109.47246 * 64.78853 * 12 11 10 14 14 H 1.08001 * 119.99754 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00470 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99586 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00183 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47226 * 60.00346 * 17 15 13 19 19 H 1.48500 * 109.47189 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47514 * 300.00126 * 17 15 13 21 21 C 1.53039 * 109.65812 * 61.15209 * 11 10 9 22 22 C 1.46928 * 120.62958 * 269.97929 * 8 5 4 23 23 C 1.52998 * 117.51866 * 145.70870 * 2 1 3 24 24 C 1.52994 * 60.00236 * 107.47688 * 23 2 1 25 25 H 1.09002 * 109.46956 * 85.57746 * 1 2 3 26 26 H 1.08999 * 109.47074 * 205.57744 * 1 2 3 27 27 H 1.09001 * 109.46813 * 325.58506 * 1 2 3 28 28 H 1.09005 * 109.47411 * 274.32836 * 3 2 1 29 29 H 1.09000 * 109.47072 * 154.33465 * 3 2 1 30 30 H 1.09005 * 109.47420 * 60.00080 * 4 3 2 31 31 H 1.09000 * 109.47384 * 300.00120 * 4 3 2 32 32 H 1.09002 * 109.58751 * 353.37527 * 9 8 5 33 33 H 1.08996 * 109.58750 * 113.65711 * 9 8 5 34 34 H 1.08997 * 109.50046 * 65.38734 * 10 9 8 35 35 H 1.09003 * 109.49733 * 185.48713 * 10 9 8 36 36 H 1.09007 * 109.35101 * 301.12962 * 11 10 9 37 37 H 1.08997 * 109.47497 * 184.78921 * 12 11 10 38 38 H 1.08997 * 109.47002 * 304.78963 * 12 11 10 39 39 H 0.96997 * 119.99553 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.49876 * 178.74890 * 21 11 10 41 41 H 1.09005 * 109.52615 * 58.67140 * 21 11 10 42 42 H 1.08998 * 109.58787 * 246.20340 * 22 8 5 43 43 H 1.09007 * 109.58600 * 6.48652 * 22 8 5 44 44 H 1.09000 * 117.49451 * 214.96950 * 23 2 1 45 45 H 1.09000 * 117.49690 * 359.97438 * 23 2 1 46 46 H 1.09003 * 117.49976 * 252.50943 * 24 23 2 47 47 H 1.09003 * 117.50287 * 107.49007 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 1.3352 2.3542 0.8135 5 16 2.1179 3.9907 0.8142 6 8 2.0693 4.5672 -0.4838 7 8 3.3276 3.9646 1.5593 8 7 1.1017 4.9345 1.7191 9 6 1.2857 5.0530 3.1719 10 6 -0.0342 4.7082 3.8689 11 6 -1.1512 5.5868 3.3000 12 6 -2.4653 5.2671 4.0153 13 6 -2.3521 5.6493 5.4686 14 1 -1.4347 6.0778 5.8444 15 6 -3.4199 5.4530 6.3184 16 7 -4.5373 4.9317 5.8606 17 14 -3.2792 5.9262 8.1199 18 1 -2.9964 7.3798 8.2293 19 1 -4.5548 5.6160 8.8142 20 1 -2.1746 5.1582 8.7487 21 6 -1.3070 5.3156 1.8019 22 6 -0.0007 5.6696 1.0843 23 6 2.2370 -1.1210 0.7645 24 6 2.2364 -1.1207 -0.7655 25 1 -0.3633 0.0792 -1.0246 26 1 -0.3633 -0.9269 0.4437 27 1 -0.3633 0.8478 0.5808 28 1 2.2767 1.7417 -1.0248 29 1 3.1823 1.3087 0.4451 30 1 1.2485 1.9930 1.8383 31 1 0.3428 2.4259 0.3684 32 1 2.0631 4.3626 3.4993 33 1 1.5749 6.0738 3.4215 34 1 -0.2746 3.6594 3.6946 35 1 0.0624 4.8867 4.9398 36 1 -0.8996 6.6361 3.4548 37 1 -3.2765 5.8301 3.5538 38 1 -2.6722 4.2000 3.9354 39 1 -5.2884 4.7932 6.4586 40 1 -2.1176 5.9262 1.4041 41 1 -1.5347 4.2613 1.6442 42 1 0.1811 6.7414 1.1639 43 1 -0.0706 5.3879 0.0336 44 1 3.1721 -0.8751 1.2675 45 1 1.6120 -1.8586 1.2680 46 1 1.6112 -1.8582 -1.2687 47 1 3.1713 -0.8746 -1.2691 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578886125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:24 Heat of formation + Delta-G solvation = -91.694049 kcal Electronic energy + Delta-G solvation = -25338.308208 eV Core-core repulsion = 21840.167765 eV Total energy + Delta-G solvation = -3498.140443 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.60629 -39.41003 -38.24735 -37.04354 -35.65587 -33.74394 -33.50743 -31.94963 -29.44007 -29.14020 -26.03556 -25.49283 -24.12627 -23.28812 -22.89590 -20.94262 -19.86375 -19.75026 -18.66184 -18.34710 -17.50575 -17.25983 -16.53164 -16.32355 -15.89292 -15.38928 -15.24297 -15.09771 -14.84249 -14.75669 -14.58584 -14.00615 -13.94487 -13.61756 -13.54689 -13.30345 -13.25536 -13.21625 -13.05446 -12.76672 -12.61727 -12.58297 -12.44141 -12.37427 -12.20009 -12.14015 -12.00811 -11.73561 -11.59039 -11.25287 -11.09294 -10.92144 -10.76327 -10.53641 -10.48099 -9.83498 -8.14187 -6.22480 -0.75068 1.42604 1.43874 1.51368 1.62354 2.44291 2.75457 2.87634 3.12743 3.19727 3.47132 3.71367 3.74697 3.84288 3.98637 4.06967 4.11397 4.11797 4.30858 4.33911 4.44694 4.46521 4.55661 4.65807 4.68495 4.79579 4.80507 4.86834 4.94271 4.97331 5.01882 5.05487 5.07940 5.14893 5.16676 5.27219 5.33735 5.39113 5.39861 5.41702 5.47194 5.63305 5.70709 5.89106 5.95952 6.34621 6.94577 7.45901 8.97146 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014936 B = 0.003473 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.235620 B = 8059.178803 C = 8966.481640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C -0.080 4.080 4 C -0.613 4.613 5 S 2.615 3.385 6 O -0.984 6.984 7 O -0.987 6.987 8 N -0.998 5.998 9 C 0.125 3.875 10 C -0.115 4.115 11 C -0.074 4.074 12 C 0.033 3.967 13 C -0.528 4.528 14 H 0.062 0.938 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.955 3.045 18 H -0.270 1.270 19 H -0.288 1.288 20 H -0.267 1.267 21 C -0.125 4.125 22 C 0.125 3.875 23 C -0.181 4.181 24 C -0.171 4.171 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.147 0.853 31 H 0.153 0.847 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.052 0.948 37 H -0.014 1.014 38 H -0.008 1.008 39 H 0.260 0.740 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.103 0.897 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.135 -9.251 -13.072 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.131 4.131 3 C -0.119 4.119 4 C -0.745 4.745 5 S 2.713 3.287 6 O -0.975 6.975 7 O -0.978 6.978 8 N -0.835 5.835 9 C 0.000 4.000 10 C -0.154 4.154 11 C -0.093 4.093 12 C -0.004 4.004 13 C -0.566 4.566 14 H 0.080 0.920 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.780 3.220 18 H -0.195 1.195 19 H -0.214 1.214 20 H -0.192 1.192 21 C -0.164 4.164 22 C 0.000 4.000 23 C -0.218 4.218 24 C -0.208 4.208 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.165 0.835 31 H 0.171 0.829 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.004 0.996 38 H 0.010 0.990 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.121 0.879 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.792 -8.949 -13.422 21.224 hybrid contribution -1.105 -0.160 1.407 1.796 sum 12.687 -9.109 -12.015 19.706 Atomic orbital electron populations 1.21555 0.91625 1.02826 1.02593 1.21350 0.95230 0.89756 1.06802 1.20956 0.97832 0.92971 1.00164 1.30629 1.13570 1.18997 1.11295 1.04753 0.74081 0.77151 0.72754 1.93539 1.87034 1.76191 1.40695 1.93536 1.44303 1.87622 1.72304 1.57589 1.46678 1.61587 1.17658 1.21489 0.97481 1.03101 0.77940 1.21822 0.93902 0.99677 0.99958 1.21007 0.95455 0.98717 0.94083 1.19023 0.92650 0.94669 0.94068 1.21673 0.99022 1.40283 0.95614 0.91990 1.25884 0.95220 0.95506 1.03150 1.70087 1.04340 1.46134 1.37023 0.85658 0.77321 0.78984 0.80030 1.19529 1.21397 1.19164 1.21964 0.97104 1.02130 0.95214 1.21497 0.84761 0.97112 0.96644 1.23297 1.02629 1.00974 0.94854 1.23158 1.02683 1.00608 0.94390 0.91544 0.92045 0.91270 0.89500 0.89916 0.83460 0.82897 0.88533 0.90954 0.92105 0.91483 0.92906 0.99557 0.98963 0.93098 0.91053 0.91492 0.90781 0.88047 0.88423 0.88342 0.87904 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.49 71.98 0.68 -1.29 16 2 C -0.13 -2.01 2.47 -52.18 -0.13 -2.14 16 3 C -0.08 -1.31 5.41 30.59 0.17 -1.15 16 4 C -0.61 -10.45 5.18 71.98 0.37 -10.07 16 5 S 2.61 61.33 5.41 -56.49 -0.31 61.02 16 6 O -0.98 -27.70 16.72 -127.65 -2.13 -29.84 16 7 O -0.99 -28.61 16.72 -127.65 -2.13 -30.74 16 8 N -1.00 -24.67 3.22 -513.07 -1.65 -26.33 16 9 C 0.12 3.29 6.31 86.36 0.54 3.84 16 10 C -0.11 -3.69 5.19 30.68 0.16 -3.53 16 11 C -0.07 -2.71 2.10 -10.76 -0.02 -2.73 16 12 C 0.03 1.62 4.45 29.85 0.13 1.75 16 13 C -0.53 -28.38 8.39 25.60 0.21 -28.17 16 14 H 0.06 3.18 7.05 -2.91 -0.02 3.16 16 15 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 16 N -0.93 -55.63 13.29 21.45 0.28 -55.34 16 17 Si 0.95 43.29 29.54 68.60 2.03 45.31 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 19 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 21 C -0.13 -3.63 5.36 30.67 0.16 -3.46 16 22 C 0.12 3.04 6.32 86.36 0.55 3.59 16 23 C -0.18 -2.61 9.82 30.59 0.30 -2.31 16 24 C -0.17 -2.27 9.97 30.59 0.31 -1.97 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 0.90 7.90 -2.39 -0.02 0.88 16 27 H 0.07 1.08 5.59 -2.39 -0.01 1.07 16 28 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.08 1.28 7.90 -2.39 -0.02 1.26 16 30 H 0.15 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.15 2.21 6.45 -2.39 -0.02 2.19 16 32 H 0.10 2.28 7.10 -2.39 -0.02 2.27 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 2.38 6.91 -2.39 -0.02 2.36 16 36 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 37 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 38 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 39 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 40 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.10 2.12 7.10 -2.38 -0.02 2.11 16 44 H 0.10 1.35 8.05 -2.39 -0.02 1.33 16 45 H 0.10 1.35 8.05 -2.39 -0.02 1.33 16 46 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -69.50 378.39 0.90 -68.60 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.92 Total: 14.52 kcal Atomic # 6 Polarization: -51.11 SS G_CDS: 3.90 Total: -47.21 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -1.37 Total: -81.67 kcal Atomic # 8 Polarization: -56.31 SS G_CDS: -4.27 Total: -60.58 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 61.33 SS G_CDS: -0.31 Total: 61.02 kcal Total: -69.50 0.90 -68.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578886125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.094 kcal (2) G-P(sol) polarization free energy of solvation -69.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds